data_6CW
#
_chem_comp.id 6CW
_chem_comp.name 6-CHLORO-L-TRYPTOPHAN
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C11 H11 Cl N2 O2'
_chem_comp.mon_nstd_parent_comp_id TRP
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-22
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 238.670
_chem_comp.one_letter_code W
_chem_comp.three_letter_code 6CW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6CW N N N 0 1 N N N Y Y N -7.564 3.312 10.527 -1.968 4.066 5.984 N 6CW 1
6CW CA CA C 0 1 N N S Y N N -6.421 3.824 11.232 -1.273 2.863 5.600 CA 6CW 2
6CW CB CB C 0 1 N N N N N N -5.274 3.683 10.322 -2.146 1.616 5.874 CB 6CW 3
6CW CG CG C 0 1 Y N N N N N -3.974 4.247 10.724 -1.379 0.362 6.018 CG 6CW 4
6CW CD2 CD2 C 0 1 Y N N N N N -2.990 3.738 11.653 -0.848 -0.172 7.225 CD2 6CW 5
6CW CE3 CE3 C 0 1 Y N N N N N -2.916 2.634 12.511 -0.856 0.247 8.571 CE3 6CW 6
6CW CE2 CE2 C 0 1 Y N N N N N -1.886 4.606 11.607 -0.200 -1.364 6.896 CE2 6CW 7
6CW NE1 NE1 N 0 1 Y N N N N N -2.179 5.613 10.719 -0.338 -1.539 5.537 NE1 6CW 8
6CW CD1 CD1 C 0 1 Y N N N N N -3.384 5.408 10.233 -1.049 -0.500 4.998 CD1 6CW 9
6CW CZ2 CZ2 C 0 1 Y N N N N N -0.696 4.398 12.337 0.443 -2.163 7.849 CZ2 6CW 10
6CW CH2 CH2 C 0 1 Y N N N N N -0.715 3.298 13.176 0.422 -1.728 9.177 CH2 6CW 11
6CW CLL CLL CL 0 0 N N N N N N 0.699 2.908 14.009 1.197 -2.676 10.389 CLL 6CW 12
6CW CZ3 CZ3 C 0 1 Y N N N N N -1.778 2.418 13.211 -0.217 -0.542 9.535 CZ3 6CW 13
6CW C C C 0 1 N N N Y N Y -6.619 5.307 11.436 -0.843 2.920 4.141 C 6CW 14
6CW O O O 0 1 N N N Y N Y -6.639 6.041 10.456 -1.507 3.474 3.271 O 6CW 15
6CW OXT OXT O 0 1 N Y N Y N Y ? ? ? 0.340 2.317 3.872 OXT 6CW 16
6CW H 1HN H 0 1 N N N Y Y N -7.829 3.956 9.810 -2.265 4.708 5.269 H 6CW 17
6CW H2 2HN H 0 1 N Y N Y Y N -8.324 3.193 11.166 -1.965 4.343 6.951 H2 6CW 18
6CW HA HA H 0 1 N N N Y N N -6.277 3.303 12.190 -0.357 2.834 6.201 HA 6CW 19
6CW HB2 1HB H 0 1 N N N N N N -5.559 4.266 9.434 -2.747 1.793 6.789 HB2 6CW 20
6CW HB3 2HB H 0 1 N N N N N N -5.116 2.603 10.185 -2.908 1.533 5.071 HB3 6CW 21
6CW HE3 HE3 H 0 1 N N N N N N -3.756 1.963 12.613 -1.349 1.168 8.866 HE3 6CW 22
6CW HE1 HE1 H 0 1 N N N N N N -1.576 6.375 10.482 0.029 -2.321 5.014 HE1 6CW 23
6CW HD1 HD1 H 0 1 N N N N N N -3.864 6.070 9.528 -1.257 -0.469 3.937 HD1 6CW 24
6CW HZ2 HZ2 H 0 1 N N N N N N 0.163 5.047 12.248 0.938 -3.084 7.558 HZ2 6CW 25
6CW HZ3 HZ3 H 0 1 N N N N N N -1.699 1.528 13.817 -0.228 -0.211 10.571 HZ3 6CW 26
6CW HXT HXT H 0 1 N Y N Y N Y -0.125 0.933 0.128 0.619 2.358 2.934 HXT 6CW 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6CW N CA SING N N 1
6CW N H SING N N 2
6CW N H2 SING N N 3
6CW CA CB SING N N 4
6CW CA C SING N N 5
6CW CA HA SING N N 6
6CW CB CG SING N N 7
6CW CB HB2 SING N N 8
6CW CB HB3 SING N N 9
6CW CG CD2 SING Y N 10
6CW CG CD1 DOUB Y N 11
6CW CD2 CE3 DOUB Y N 12
6CW CD2 CE2 SING Y N 13
6CW CE3 CZ3 SING Y N 14
6CW CE3 HE3 SING N N 15
6CW CE2 NE1 SING Y N 16
6CW CE2 CZ2 DOUB Y N 17
6CW NE1 CD1 SING Y N 18
6CW NE1 HE1 SING N N 19
6CW CD1 HD1 SING N N 20
6CW CZ2 CH2 SING Y N 21
6CW CZ2 HZ2 SING N N 22
6CW CH2 CLL SING N N 23
6CW CH2 CZ3 DOUB Y N 24
6CW CZ3 HZ3 SING N N 25
6CW C O DOUB N N 26
6CW C OXT SING N N 27
6CW OXT HXT SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6CW SMILES ACDLabs 10.04 'O=C(O)C(N)Cc2c1ccc(Cl)cc1nc2'
6CW SMILES_CANONICAL CACTVS 3.341 'N[C@@H](Cc1c[nH]c2cc(Cl)ccc12)C(O)=O'
6CW SMILES CACTVS 3.341 'N[CH](Cc1c[nH]c2cc(Cl)ccc12)C(O)=O'
6CW SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc2c(cc1Cl)[nH]cc2C[C@@H](C(=O)O)N'
6CW SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc2c(cc1Cl)[nH]cc2CC(C(=O)O)N'
6CW InChI InChI 1.03 'InChI=1S/C11H11ClN2O2/c12-7-1-2-8-6(3-9(13)11(15)16)5-14-10(8)4-7/h1-2,4-5,9,14H,3,13H2,(H,15,16)/t9-/m0/s1'
6CW InChIKey InChI 1.03 FICLVQOYKYBXFN-VIFPVBQESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6CW 'SYSTEMATIC NAME' ACDLabs 10.04 6-chloro-L-tryptophan
6CW 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2S)-2-amino-3-(6-chloro-1H-indol-3-yl)propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6CW 'Create component' 2005-09-22 RCSB
6CW 'Modify descriptor' 2011-06-04 RCSB
6CW 'Modify backbone' 2023-11-03 PDBE
6CW 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 6CW
_pdbx_chem_comp_pcm.modified_residue_id TRP
_pdbx_chem_comp_pcm.type Chlorination
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0052
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 2AXI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6CW N N 10.716 2.788 1
6CW CA C 10.250 1.362 2
6CW CB C 8.783 1.052 3
6CW CG C 8.316 -0.373 4
6CW CD2 C 6.897 -0.830 5
6CW CE3 C 5.598 -0.080 6
6CW CE2 C 6.897 -2.330 7
6CW NE1 N 8.316 -2.788 8
6CW CD1 C 9.192 -1.580 9
6CW CZ2 C 5.598 -3.080 10
6CW CH2 C 4.299 -2.330 11
6CW CLL Cl 3.000 -3.080 12
6CW CZ3 C 4.299 -0.830 13
6CW C C 11.252 0.245 14
6CW O O 12.720 0.555 15
6CW OXT O 10.786 -1.181 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6CW CA N SINGLE BEGINDASH 1
6CW CA CB SINGLE NONE 2
6CW CA C SINGLE NONE 3
6CW CB CG SINGLE NONE 4
6CW CG CD2 SINGLE NONE 5
6CW CG CD1 DOUBLE NONE 6
6CW CD2 CE3 DOUBLE NONE 7
6CW CD2 CE2 SINGLE NONE 8
6CW CE3 CZ3 SINGLE NONE 9
6CW CE2 NE1 SINGLE NONE 10
6CW CE2 CZ2 DOUBLE NONE 11
6CW NE1 CD1 SINGLE NONE 12
6CW CZ2 CH2 SINGLE NONE 13
6CW CH2 CLL SINGLE NONE 14
6CW CH2 CZ3 DOUBLE NONE 15
6CW C O DOUBLE NONE 16
6CW C OXT SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6CW MurckoScaffold S1 scaffold 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
6CW indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
6CW peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
6CW phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
6CW pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6CW CG S1 1
6CW CD2 S1 1
6CW CE3 S1 1
6CW CE2 S1 1
6CW NE1 S1 1
6CW CD1 S1 1
6CW CZ2 S1 1
6CW CH2 S1 1
6CW CZ3 S1 1
6CW CE2 F1 1
6CW CD2 F1 1
6CW CG F1 1
6CW CD1 F1 1
6CW NE1 F1 1
6CW CE3 F1 1
6CW CZ3 F1 1
6CW CH2 F1 1
6CW CZ2 F1 1
6CW O F2 1
6CW C F2 1
6CW CA F2 1
6CW N F2 1
6CW CD2 F3 1
6CW CE3 F3 1
6CW CZ3 F3 1
6CW CH2 F3 1
6CW CZ2 F3 1
6CW CE2 F3 1
6CW CE2 F4 1
6CW CD2 F4 1
6CW CG F4 1
6CW CD1 F4 1
6CW NE1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6CW
_pdbe_chem_comp_rdkit_properties.exactmw 238.051
_pdbe_chem_comp_rdkit_properties.amw 238.674
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.182
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.731
_pdbe_chem_comp_rdkit_properties.tpsa 79.110
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.293
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.152
_pdbe_chem_comp_rdkit_properties.chi0v 8.345
_pdbe_chem_comp_rdkit_properties.chi1v 4.396
_pdbe_chem_comp_rdkit_properties.chi2v 1.917
_pdbe_chem_comp_rdkit_properties.chi3v 1.917
_pdbe_chem_comp_rdkit_properties.chi4v 1.203
_pdbe_chem_comp_rdkit_properties.chi0n 18.589
_pdbe_chem_comp_rdkit_properties.chi1n 9.268
_pdbe_chem_comp_rdkit_properties.chi2n 1.728
_pdbe_chem_comp_rdkit_properties.chi3n 1.728
_pdbe_chem_comp_rdkit_properties.chi4n 1.067
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 3.752
_pdbe_chem_comp_rdkit_properties.kappa2 4.155
_pdbe_chem_comp_rdkit_properties.kappa3 2.028
_pdbe_chem_comp_rdkit_properties.Phi 0.974
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6CW UniChem PDBe 6CW
6CW UniChem ChEBI 139335
6CW UniChem ChEBI 140077
6CW UniChem ZINC ZINC000002020167
6CW UniChem eMolecules 28294244
6CW UniChem fdasrs T8BEF538ZK
6CW UniChem SureChEMBL SCHEMBL456668
6CW UniChem 'PubChem TPHARMA' 16570887
6CW UniChem ACTor 33468-35-8
6CW UniChem Nikkaji J703.866F
6CW UniChem MetaboLights MTBLC139335
6CW UniChem MetaboLights MTBLC140077
6CW UniChem BRENDA 141262
6CW UniChem BRENDA 195028
6CW UniChem Rhea 139335
6CW UniChem ChemicalBook CB0399395
6CW UniChem PubChem 10062693
6CW UniChem PubChem 38988595
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6CW N -2.363 -1.572 0.402 ETKDGv3 1
6CW CA -2.067 -0.171 0.716 ETKDGv3 2
6CW CB -1.521 0.591 -0.510 ETKDGv3 3
6CW CG -0.191 0.051 -0.951 ETKDGv3 4
6CW CD2 1.098 0.289 -0.310 ETKDGv3 5
6CW CE3 1.456 1.031 0.741 ETKDGv3 6
6CW CE2 2.048 -0.497 -1.051 ETKDGv3 7
6CW NE1 1.382 -1.187 -2.094 ETKDGv3 8
6CW CD1 0.006 -0.806 -1.964 ETKDGv3 9
6CW CZ2 3.343 -0.532 -0.734 ETKDGv3 10
6CW CH2 3.788 0.286 0.429 ETKDGv3 11
6CW CLL 5.480 0.284 0.893 ETKDGv3 12
6CW CZ3 2.894 1.025 1.127 ETKDGv3 13
6CW C -3.306 0.500 1.232 ETKDGv3 14
6CW O -4.374 0.468 0.562 ETKDGv3 15
6CW OXT -3.269 1.183 2.444 ETKDGv3 16
6CW H -1.464 -2.085 0.251 ETKDGv3 17
6CW H2 -2.911 -1.628 -0.488 ETKDGv3 18
6CW HA -1.303 -0.143 1.525 ETKDGv3 19
6CW HB2 -1.391 1.664 -0.249 ETKDGv3 20
6CW HB3 -2.248 0.541 -1.350 ETKDGv3 21
6CW HE3 0.731 1.614 1.293 ETKDGv3 22
6CW HE1 1.794 -1.850 -2.787 ETKDGv3 23
6CW HD1 -0.780 -1.189 -2.602 ETKDGv3 24
6CW HZ2 4.042 -1.133 -1.300 ETKDGv3 25
6CW HZ3 3.218 1.618 1.973 ETKDGv3 26
6CW HXT -4.093 1.649 2.803 ETKDGv3 27
#