data_6E5
#
_chem_comp.id 6E5
_chem_comp.name
N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H31 N5 O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-06-18
_chem_comp.pdbx_modified_date 2014-08-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 545.719
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6E5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UPO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6E5 S01 S01 S 0 1 Y N N N N N 9.983 0.404 60.810 -9.912 -1.938 0.254 S01 6E5 1
6E5 C02 C02 C 0 1 Y N N N N N 10.196 1.409 62.199 -10.459 -3.214 -0.738 C02 6E5 2
6E5 C03 C03 C 0 1 Y N N N N N 11.617 1.655 62.308 -9.901 -3.149 -1.951 C03 6E5 3
6E5 C04 C04 C 0 1 Y N N N N N 12.416 1.126 61.307 -9.029 -2.099 -2.136 C04 6E5 4
6E5 C05 C05 C 0 1 Y N N N N N 11.675 0.393 60.404 -8.894 -1.308 -1.034 C05 6E5 5
6E5 C06 C06 C 0 1 N N N N N N 12.010 -0.358 59.166 -8.036 -0.118 -0.938 C06 6E5 6
6E5 N07 N07 N 0 1 N N N N N N 13.062 0.067 58.441 -7.985 0.604 0.239 N07 6E5 7
6E5 N08 N08 N 0 1 N N N N N N 11.305 -1.421 58.787 -7.321 0.257 -1.965 N08 6E5 8
6E5 "N1'" "N1'" N 0 1 N N N N N N 17.763 5.231 55.304 -0.890 -0.185 1.394 "N1'" 6E5 9
6E5 C11 C11 C 0 1 Y N N N N N 13.457 1.383 58.342 -7.084 1.664 0.370 C11 6E5 10
6E5 C12 C12 C 0 1 Y N N N N N 12.601 2.488 58.301 -7.470 2.829 1.022 C12 6E5 11
6E5 C13 C13 C 0 1 Y N N N N N 13.061 3.798 58.170 -6.577 3.875 1.150 C13 6E5 12
6E5 C14 C14 C 0 1 Y N N N N N 14.467 4.039 58.064 -5.301 3.764 0.629 C14 6E5 13
6E5 C15 C15 C 0 1 Y N N N N N 15.318 2.930 58.080 -4.914 2.607 -0.021 C15 6E5 14
6E5 C16 C16 C 0 1 Y N N N N N 14.830 1.636 58.236 -5.799 1.554 -0.146 C16 6E5 15
6E5 C17 C17 C 0 1 N N N N N N 16.849 3.096 58.002 -3.522 2.491 -0.586 C17 6E5 16
6E5 O18 O18 O 0 1 N N N N N N 17.119 4.415 57.578 -2.649 1.942 0.404 O18 6E5 17
6E5 C19 C19 C 0 1 N N N N N N 18.536 4.597 57.466 -1.297 1.790 -0.033 C19 6E5 18
6E5 "C2'" "C2'" C 0 1 N N S N N N 18.910 4.680 55.993 -0.458 1.198 1.102 "C2'" 6E5 19
6E5 S21 S21 S 0 1 Y N N N N N 20.877 15.858 57.279 10.738 0.301 -0.648 S21 6E5 20
6E5 C22 C22 C 0 1 Y N N N N N 21.798 17.130 56.526 11.366 1.791 -1.192 C22 6E5 21
6E5 C23 C23 C 0 1 Y N N N N N 23.043 16.598 56.184 10.383 2.624 -1.546 C23 6E5 22
6E5 C24 C24 C 0 1 Y N N N N N 23.237 15.249 56.518 9.110 2.119 -1.400 C24 6E5 23
6E5 C25 C25 C 0 1 Y N N N N N 22.126 14.669 57.140 9.087 0.845 -0.916 C25 6E5 24
6E5 C26 C26 C 0 1 N N N N N N 21.814 13.312 57.685 7.876 0.051 -0.659 C26 6E5 25
6E5 N27 N27 N 0 1 N N N N N N 21.179 12.415 56.939 7.984 -1.235 -0.166 N27 6E5 26
6E5 N28 N28 N 0 1 N N N N N N 22.173 12.989 58.923 6.697 0.563 -0.897 N28 6E5 27
6E5 "C3'" "C3'" C 0 1 N N N N N N 20.044 5.680 55.748 1.022 1.067 0.665 "C3'" 6E5 28
6E5 C30 C30 C 0 1 Y N N N N N 21.068 10.518 55.534 5.806 -1.289 0.876 C30 6E5 29
6E5 C31 C31 C 0 1 Y N N N N N 21.829 11.410 56.294 6.835 -1.939 0.207 C31 6E5 30
6E5 C32 C32 C 0 1 Y N N N N N 23.223 11.243 56.364 6.720 -3.291 -0.091 C32 6E5 31
6E5 C33 C33 C 0 1 Y N N N N N 23.846 10.192 55.682 5.584 -3.984 0.278 C33 6E5 32
6E5 C34 C34 C 0 1 Y N N N N N 23.073 9.304 54.926 4.562 -3.333 0.944 C34 6E5 33
6E5 C35 C35 C 0 1 Y N N N N N 21.684 9.470 54.849 4.673 -1.988 1.242 C35 6E5 34
6E5 C37 C37 C 0 1 N N N N N N 20.825 8.521 54.045 3.556 -1.283 1.968 C37 6E5 35
6E5 O38 O38 O 0 1 N N N N N N 19.844 7.991 54.936 2.631 -0.751 1.018 O38 6E5 36
6E5 "C4'" "C4'" C 0 1 N N S N N N 19.546 6.633 54.658 1.527 -0.060 1.605 "C4'" 6E5 37
6E5 "C5'" "C5'" C 0 1 N N N N N N 18.036 6.504 54.672 0.301 -0.989 1.724 "C5'" 6E5 38
6E5 H02 H02 H 0 1 N N N N N N 9.422 1.780 62.855 -11.163 -3.972 -0.428 H02 6E5 39
6E5 H03 H03 H 0 1 N N N N N N 12.034 2.222 63.127 -10.117 -3.868 -2.727 H03 6E5 40
6E5 H04 H04 H 0 1 N N N N N N 13.484 1.270 61.242 -8.504 -1.920 -3.063 H04 6E5 41
6E5 HN07 HN07 H 0 0 N N N N N N 13.592 -0.618 57.941 -8.574 0.374 0.975 HN07 6E5 42
6E5 HN08 HN08 H 0 0 N N N N N N 11.657 -1.822 57.941 -6.827 1.091 -1.934 HN08 6E5 43
6E5 "HN1'" "HN1'" H 0 0 N N N N N N 17.473 4.582 54.600 -1.559 -0.203 2.149 "HN1'" 6E5 44
6E5 H12 H12 H 0 1 N N N N N N 11.537 2.319 58.374 -8.467 2.916 1.428 H12 6E5 45
6E5 H13 H13 H 0 1 N N N N N N 12.363 4.622 58.149 -6.877 4.781 1.656 H13 6E5 46
6E5 H14 H14 H 0 1 N N N N N N 14.857 5.042 57.975 -4.605 4.584 0.731 H14 6E5 47
6E5 H16 H16 H 0 1 N N N N N N 15.525 0.810 58.276 -5.494 0.649 -0.650 H16 6E5 48
6E5 H17 H17 H 0 1 N N N N N N 17.295 2.923 58.992 -3.537 1.837 -1.459 H17 6E5 49
6E5 H17A H17A H 0 0 N N N N N N 17.267 2.378 57.281 -3.165 3.478 -0.878 H17A 6E5 50
6E5 H19 H19 H 0 1 N N N N N N 18.830 5.527 57.974 -1.267 1.122 -0.894 H19 6E5 51
6E5 H19A H19A H 0 0 N N N N N N 19.055 3.746 57.931 -0.894 2.763 -0.314 H19A 6E5 52
6E5 "H2'" "H2'" H 0 1 N N N N N N 19.181 3.687 55.605 -0.539 1.818 1.995 "H2'" 6E5 53
6E5 H22 H22 H 0 1 N N N N N N 21.467 18.144 56.355 12.419 2.029 -1.244 H22 6E5 54
6E5 H23 H23 H 0 1 N N N N N N 23.806 17.186 55.695 10.573 3.620 -1.918 H23 6E5 55
6E5 H24 H24 H 0 1 N N N N N N 24.152 14.712 56.315 8.218 2.677 -1.645 H24 6E5 56
6E5 HN28 HN28 H 0 0 N N N N N N 21.906 12.054 59.159 5.904 0.010 -0.820 HN28 6E5 57
6E5 HN27 HN27 H 0 0 N N N N N N 20.185 12.481 56.848 8.856 -1.649 -0.078 HN27 6E5 58
6E5 "H3'" "H3'" H 0 1 N N N N N N 20.266 6.238 56.670 1.096 0.766 -0.380 "H3'" 6E5 59
6E5 "H3'A" "H3'A" H 0 0 N N N N N N 20.949 5.154 55.410 1.565 1.995 0.842 "H3'A" 6E5 60
6E5 H30 H30 H 0 1 N N N N N N 19.997 10.640 55.476 5.894 -0.239 1.113 H30 6E5 61
6E5 H32 H32 H 0 1 N N N N N N 23.817 11.930 56.948 7.519 -3.800 -0.611 H32 6E5 62
6E5 H33 H33 H 0 1 N N N N N N 24.917 10.067 55.739 5.495 -5.035 0.046 H33 6E5 63
6E5 H34 H34 H 0 1 N N N N N N 23.548 8.489 54.401 3.674 -3.878 1.231 H34 6E5 64
6E5 H37 H37 H 0 1 N N N N N N 20.335 9.061 53.221 3.042 -1.991 2.619 H37 6E5 65
6E5 H37A H37A H 0 0 N N N N N N 21.442 7.708 53.635 3.967 -0.472 2.568 H37A 6E5 66
6E5 "H4'" "H4'" H 0 1 N N N N N N 19.943 6.324 53.680 1.802 0.346 2.579 "H4'" 6E5 67
6E5 "H5'" "H5'" H 0 1 N N N N N N 17.639 6.517 53.646 0.221 -1.369 2.742 "H5'" 6E5 68
6E5 "H5'A" "H5'A" H 0 0 N N N N N N 17.585 7.325 55.250 0.395 -1.818 1.023 "H5'A" 6E5 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6E5 S01 C02 SING Y N 1
6E5 S01 C05 SING Y N 2
6E5 C02 C03 DOUB Y N 3
6E5 C03 C04 SING Y N 4
6E5 C04 C05 DOUB Y N 5
6E5 C05 C06 SING N N 6
6E5 C06 N07 SING N N 7
6E5 C06 N08 DOUB N N 8
6E5 N07 C11 SING N N 9
6E5 "N1'" "C2'" SING N N 10
6E5 "N1'" "C5'" SING N N 11
6E5 C11 C12 DOUB Y N 12
6E5 C11 C16 SING Y N 13
6E5 C12 C13 SING Y N 14
6E5 C13 C14 DOUB Y N 15
6E5 C14 C15 SING Y N 16
6E5 C15 C16 DOUB Y N 17
6E5 C15 C17 SING N N 18
6E5 C17 O18 SING N N 19
6E5 O18 C19 SING N N 20
6E5 C19 "C2'" SING N N 21
6E5 "C2'" "C3'" SING N N 22
6E5 S21 C22 SING Y N 23
6E5 S21 C25 SING Y N 24
6E5 C22 C23 DOUB Y N 25
6E5 C23 C24 SING Y N 26
6E5 C24 C25 DOUB Y N 27
6E5 C25 C26 SING N N 28
6E5 C26 N27 SING N N 29
6E5 C26 N28 DOUB N N 30
6E5 N27 C31 SING N N 31
6E5 "C3'" "C4'" SING N N 32
6E5 C30 C31 DOUB Y N 33
6E5 C30 C35 SING Y N 34
6E5 C31 C32 SING Y N 35
6E5 C32 C33 DOUB Y N 36
6E5 C33 C34 SING Y N 37
6E5 C34 C35 DOUB Y N 38
6E5 C35 C37 SING N N 39
6E5 C37 O38 SING N N 40
6E5 O38 "C4'" SING N N 41
6E5 "C4'" "C5'" SING N N 42
6E5 C02 H02 SING N N 43
6E5 C03 H03 SING N N 44
6E5 C04 H04 SING N N 45
6E5 N07 HN07 SING N N 46
6E5 N08 HN08 SING N N 47
6E5 "N1'" "HN1'" SING N N 48
6E5 C12 H12 SING N N 49
6E5 C13 H13 SING N N 50
6E5 C14 H14 SING N N 51
6E5 C16 H16 SING N N 52
6E5 C17 H17 SING N N 53
6E5 C17 H17A SING N N 54
6E5 C19 H19 SING N N 55
6E5 C19 H19A SING N N 56
6E5 "C2'" "H2'" SING N N 57
6E5 C22 H22 SING N N 58
6E5 C23 H23 SING N N 59
6E5 C24 H24 SING N N 60
6E5 N28 HN28 SING N N 61
6E5 N27 HN27 SING N N 62
6E5 "C3'" "H3'" SING N N 63
6E5 "C3'" "H3'A" SING N N 64
6E5 C30 H30 SING N N 65
6E5 C32 H32 SING N N 66
6E5 C33 H33 SING N N 67
6E5 C34 H34 SING N N 68
6E5 C37 H37 SING N N 69
6E5 C37 H37A SING N N 70
6E5 "C4'" "H4'" SING N N 71
6E5 "C5'" "H5'" SING N N 72
6E5 "C5'" "H5'A" SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6E5 SMILES ACDLabs 12.01 s1cccc1C(=[N@H])Nc2cccc(c2)COCC5NCC(OCc3cc(ccc3)NC(=[N@H])c4sccc4)C5
6E5 InChI InChI 1.03 InChI=1S/C29H31N5O2S2/c30-28(26-9-3-11-37-26)33-22-7-1-5-20(13-22)17-35-19-24-15-25(16-32-24)36-18-21-6-2-8-23(14-21)34-29(31)27-10-4-12-38-27/h1-14,24-25,32H,15-19H2,(H2,30,33)(H2,31,34)/t24-,25-/m0/s1
6E5 InChIKey InChI 1.03 GPVRORSBZUBDJB-DQEYMECFSA-N
6E5 SMILES_CANONICAL CACTVS 3.385 N=C(Nc1cccc(COC[C@@H]2C[C@@H](CN2)OCc3cccc(NC(=N)c4sccc4)c3)c1)c5sccc5
6E5 SMILES CACTVS 3.385 N=C(Nc1cccc(COC[CH]2C[CH](CN2)OCc3cccc(NC(=N)c4sccc4)c3)c1)c5sccc5
6E5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/c1cccs1)\Nc2cccc(c2)COC[C@@H]3C[C@@H](CN3)OCc4cccc(c4)N/C(=N\[H])/c5cccs5"
6E5 SMILES "OpenEye OEToolkits" 1.7.6 c1cc(cc(c1)NC(=N)c2cccs2)COCC3CC(CN3)OCc4cccc(c4)NC(=N)c5cccs5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6E5 "SYSTEMATIC NAME" ACDLabs 12.01 N-[3-({[(3S,5S)-5-{[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)oxy]methyl}pyrrolidin-3-yl]oxy}methyl)phenyl]thiophene-2-carboximidamide
6E5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-[3-[[(2S,4S)-4-[[3-[(C-thiophen-2-ylcarbonimidoyl)amino]phenyl]methoxy]pyrrolidin-2-yl]methoxymethyl]phenyl]thiophene-2-carboximidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6E5 'Create component' 2014-06-18 EBI
6E5 'Initial release' 2014-08-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6E5 S01 S 12.207 -7.679 1
6E5 C02 C 13.674 -7.991 2
6E5 C03 C 13.831 -9.483 3
6E5 C04 C 12.460 -10.093 4
6E5 C05 C 11.457 -8.978 5
6E5 C06 C 9.965 -9.135 6
6E5 N07 N 9.083 -7.922 7
6E5 N08 N 9.355 -10.505 8
6E5 "N1'" N 3.925 -0.555 9
6E5 C11 C 7.591 -8.078 10
6E5 C12 C 6.981 -9.449 11
6E5 C13 C 5.490 -9.605 12
6E5 C14 C 4.608 -8.392 13
6E5 C15 C 5.218 -7.022 14
6E5 C16 C 6.710 -6.865 15
6E5 C17 C 4.336 -5.808 16
6E5 O18 O 4.946 -4.438 17
6E5 C19 C 4.065 -3.224 18
6E5 "C2'" C 4.675 -1.854 19
6E5 S21 S 12.709 9.831 20
6E5 C22 C 12.245 11.258 21
6E5 C23 C 10.745 11.258 22
6E5 C24 C 10.282 9.831 23
6E5 C25 C 11.495 8.950 24
6E5 C26 C 11.495 7.450 25
6E5 N27 N 10.196 6.700 26
6E5 N28 N 12.794 6.700 27
6E5 "C3'" C 6.142 -1.542 28
6E5 C30 C 8.897 4.450 29
6E5 C31 C 10.196 5.200 30
6E5 C32 C 11.495 4.450 31
6E5 C33 C 11.495 2.950 32
6E5 C34 C 10.196 2.200 33
6E5 C35 C 8.897 2.950 34
6E5 C37 C 7.598 2.200 35
6E5 O38 O 7.598 0.700 36
6E5 "C4'" C 6.299 -0.050 37
6E5 "C5'" C 4.928 0.560 38
6E5 HN08 H 7.863 -10.662 39
6E5 HN28 H 12.794 5.200 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6E5 S01 C02 SINGLE NONE 1
6E5 S01 C05 SINGLE NONE 2
6E5 C02 C03 DOUBLE NONE 3
6E5 C03 C04 SINGLE NONE 4
6E5 C04 C05 DOUBLE NONE 5
6E5 C05 C06 SINGLE ENDUPRIGHT 6
6E5 C06 N07 SINGLE ENDUPRIGHT 7
6E5 C06 N08 DOUBLE NONE 8
6E5 N07 C11 SINGLE NONE 9
6E5 "N1'" "C2'" SINGLE NONE 10
6E5 "N1'" "C5'" SINGLE NONE 11
6E5 C11 C12 DOUBLE NONE 12
6E5 C11 C16 SINGLE NONE 13
6E5 C12 C13 SINGLE NONE 14
6E5 C13 C14 DOUBLE NONE 15
6E5 C14 C15 SINGLE NONE 16
6E5 C15 C16 DOUBLE NONE 17
6E5 C15 C17 SINGLE NONE 18
6E5 C17 O18 SINGLE NONE 19
6E5 O18 C19 SINGLE NONE 20
6E5 "C2'" C19 SINGLE BEGINWEDGE 21
6E5 "C2'" "C3'" SINGLE NONE 22
6E5 S21 C22 SINGLE NONE 23
6E5 S21 C25 SINGLE NONE 24
6E5 C22 C23 DOUBLE NONE 25
6E5 C23 C24 SINGLE NONE 26
6E5 C24 C25 DOUBLE NONE 27
6E5 C25 C26 SINGLE ENDUPRIGHT 28
6E5 C26 N27 SINGLE ENDUPRIGHT 29
6E5 C26 N28 DOUBLE NONE 30
6E5 N27 C31 SINGLE NONE 31
6E5 "C3'" "C4'" SINGLE NONE 32
6E5 C30 C31 DOUBLE NONE 33
6E5 C30 C35 SINGLE NONE 34
6E5 C31 C32 SINGLE NONE 35
6E5 C32 C33 DOUBLE NONE 36
6E5 C33 C34 SINGLE NONE 37
6E5 C34 C35 DOUBLE NONE 38
6E5 C35 C37 SINGLE NONE 39
6E5 C37 O38 SINGLE NONE 40
6E5 "C4'" O38 SINGLE BEGINWEDGE 41
6E5 "C4'" "C5'" SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6E5 MurckoScaffold S1 scaffold 'N=C(Nc1cccc(COC[C@@H]2C[C@H](OCc3cccc(NC(=N)c4cccs4)c3)CN2)c1)c1cccs1' InChI=1S/C29H31N5O2S2/c30-28(26-9-3-11-37-26)33-22-7-1-5-20(13-22)17-35-19-24-15-25(16-32-24)36-18-21-6-2-8-23(14-21)34-29(31)27-10-4-12-38-27/h1-14,24-25,32H,15-19H2,(H2,30,33)(H2,31,34)/t24-,25-/m0/s1 GPVRORSBZUBDJB-DQEYMECFSA-N
6E5 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
6E5 thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6E5 S01 S1 1
6E5 C02 S1 1
6E5 C03 S1 1
6E5 C04 S1 1
6E5 C05 S1 1
6E5 C06 S1 1
6E5 N07 S1 1
6E5 N08 S1 1
6E5 "N1'" S1 1
6E5 C11 S1 1
6E5 C12 S1 1
6E5 C13 S1 1
6E5 C14 S1 1
6E5 C15 S1 1
6E5 C16 S1 1
6E5 C17 S1 1
6E5 O18 S1 1
6E5 C19 S1 1
6E5 "C2'" S1 1
6E5 S21 S1 1
6E5 C22 S1 1
6E5 C23 S1 1
6E5 C24 S1 1
6E5 C25 S1 1
6E5 C26 S1 1
6E5 N27 S1 1
6E5 N28 S1 1
6E5 "C3'" S1 1
6E5 C30 S1 1
6E5 C31 S1 1
6E5 C32 S1 1
6E5 C33 S1 1
6E5 C34 S1 1
6E5 C35 S1 1
6E5 C37 S1 1
6E5 O38 S1 1
6E5 "C4'" S1 1
6E5 "C5'" S1 1
6E5 C11 F1 1
6E5 C12 F1 1
6E5 C13 F1 1
6E5 C14 F1 1
6E5 C15 F1 1
6E5 C16 F1 1
6E5 C30 F1 2
6E5 C31 F1 2
6E5 C32 F1 2
6E5 C33 F1 2
6E5 C34 F1 2
6E5 C35 F1 2
6E5 C02 F2 1
6E5 C03 F2 1
6E5 C04 F2 1
6E5 C05 F2 1
6E5 S01 F2 1
6E5 C22 F2 2
6E5 C23 F2 2
6E5 C24 F2 2
6E5 C25 F2 2
6E5 S21 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 6E5
_pdbe_chem_comp_rdkit_properties.exactmw 545.192
_pdbe_chem_comp_rdkit_properties.amw 545.734
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 69
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.241
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 274.254
_pdbe_chem_comp_rdkit_properties.tpsa 102.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.168
_pdbe_chem_comp_rdkit_properties.CrippenMR 154.353
_pdbe_chem_comp_rdkit_properties.chi0v 20.002
_pdbe_chem_comp_rdkit_properties.chi1v 11.555
_pdbe_chem_comp_rdkit_properties.chi2v 5.268
_pdbe_chem_comp_rdkit_properties.chi3v 5.268
_pdbe_chem_comp_rdkit_properties.chi4v 3.247
_pdbe_chem_comp_rdkit_properties.chi0n 49.369
_pdbe_chem_comp_rdkit_properties.chi1n 25.158
_pdbe_chem_comp_rdkit_properties.chi2n 3.883
_pdbe_chem_comp_rdkit_properties.chi3n 3.883
_pdbe_chem_comp_rdkit_properties.chi4n 2.360
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.340
_pdbe_chem_comp_rdkit_properties.kappa1 8.093
_pdbe_chem_comp_rdkit_properties.kappa2 12.947
_pdbe_chem_comp_rdkit_properties.kappa3 7.367
_pdbe_chem_comp_rdkit_properties.Phi 2.757
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6E5 UniChem ChEMBL CHEMBL3325614
6E5 UniChem PDBe 6E5
6E5 UniChem ZINC ZINC000098208545
6E5 UniChem SureChEMBL SCHEMBL15499571
6E5 UniChem PubChem 76936799
6E5 UniChem BindingDb 152720
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6E5 S01 -6.715 -1.007 -5.727 ETKDGv3 1
6E5 C02 -8.381 -1.625 -5.758 ETKDGv3 2
6E5 C03 -8.928 -1.484 -4.553 ETKDGv3 3
6E5 C04 -8.036 -0.872 -3.543 ETKDGv3 4
6E5 C05 -6.822 -0.565 -4.005 ETKDGv3 5
6E5 C06 -5.739 0.070 -3.231 ETKDGv3 6
6E5 N07 -5.867 0.244 -1.808 ETKDGv3 7
6E5 N08 -4.645 0.403 -3.841 ETKDGv3 8
6E5 "N1'" -0.125 1.506 3.793 ETKDGv3 9
6E5 C11 -5.325 1.356 -1.075 ETKDGv3 10
6E5 C12 -5.173 2.568 -1.643 ETKDGv3 11
6E5 C13 -4.638 3.697 -0.857 ETKDGv3 12
6E5 C14 -4.323 3.529 0.432 ETKDGv3 13
6E5 C15 -4.515 2.211 1.081 ETKDGv3 14
6E5 C16 -4.990 1.181 0.358 ETKDGv3 15
6E5 C17 -4.134 2.033 2.527 ETKDGv3 16
6E5 O18 -2.729 2.105 2.678 ETKDGv3 17
6E5 C19 -2.149 0.828 2.502 ETKDGv3 18
6E5 "C2'" -0.619 0.961 2.525 ETKDGv3 19
6E5 S21 7.694 -0.342 -4.308 ETKDGv3 20
6E5 C22 9.382 0.187 -4.128 ETKDGv3 21
6E5 C23 9.663 0.337 -2.836 ETKDGv3 22
6E5 C24 8.537 0.035 -1.925 ETKDGv3 23
6E5 C25 7.417 -0.335 -2.549 ETKDGv3 24
6E5 C26 6.150 -0.713 -1.896 ETKDGv3 25
6E5 N27 5.975 -0.525 -0.482 ETKDGv3 26
6E5 N28 5.173 -1.150 -2.628 ETKDGv3 27
6E5 "C3'" 0.081 -0.371 2.317 ETKDGv3 28
6E5 C30 4.702 -0.975 1.510 ETKDGv3 29
6E5 C31 5.228 -1.423 0.357 ETKDGv3 30
6E5 C32 5.074 -2.857 0.000 ETKDGv3 31
6E5 C33 4.388 -3.682 0.800 ETKDGv3 32
6E5 C34 3.785 -3.174 2.048 ETKDGv3 33
6E5 C35 3.939 -1.887 2.398 ETKDGv3 34
6E5 C37 3.308 -1.360 3.659 ETKDGv3 35
6E5 O38 1.897 -1.354 3.540 ETKDGv3 36
6E5 "C4'" 1.444 -0.153 2.939 ETKDGv3 37
6E5 "C5'" 1.218 0.948 3.982 ETKDGv3 38
6E5 H02 -8.883 -2.049 -6.617 ETKDGv3 39
6E5 H03 -9.942 -1.790 -4.334 ETKDGv3 40
6E5 H04 -8.357 -0.683 -2.528 ETKDGv3 41
6E5 HN07 -6.353 -0.505 -1.266 ETKDGv3 42
6E5 HN08 -3.827 0.813 -3.337 ETKDGv3 43
6E5 "HN1'" -0.725 1.155 4.578 ETKDGv3 44
6E5 H12 -5.452 2.739 -2.674 ETKDGv3 45
6E5 H13 -4.504 4.663 -1.326 ETKDGv3 46
6E5 H14 -3.930 4.362 1.002 ETKDGv3 47
6E5 H16 -5.120 0.207 0.814 ETKDGv3 48
6E5 H17 -4.582 2.868 3.105 ETKDGv3 49
6E5 H17A -4.571 1.103 2.962 ETKDGv3 50
6E5 H19 -2.442 0.390 1.521 ETKDGv3 51
6E5 H19A -2.474 0.141 3.317 ETKDGv3 52
6E5 "H2'" -0.316 1.653 1.706 ETKDGv3 53
6E5 H22 10.081 0.361 -4.935 ETKDGv3 54
6E5 H23 10.637 0.651 -2.484 ETKDGv3 55
6E5 H24 8.632 0.098 -0.849 ETKDGv3 56
6E5 HN28 4.239 -1.388 -2.227 ETKDGv3 57
6E5 HN27 6.408 0.320 -0.044 ETKDGv3 58
6E5 "H3'" -0.460 -1.182 2.855 ETKDGv3 59
6E5 "H3'A" 0.159 -0.628 1.238 ETKDGv3 60
6E5 H30 4.820 0.065 1.790 ETKDGv3 61
6E5 H32 5.529 -3.250 -0.900 ETKDGv3 62
6E5 H33 4.279 -4.726 0.537 ETKDGv3 63
6E5 H34 3.221 -3.854 2.675 ETKDGv3 64
6E5 H37 3.719 -0.360 3.931 ETKDGv3 65
6E5 H37A 3.580 -2.034 4.499 ETKDGv3 66
6E5 "H4'" 2.128 0.216 2.137 ETKDGv3 67
6E5 "H5'" 1.970 1.755 3.846 ETKDGv3 68
6E5 "H5'A" 1.332 0.547 5.015 ETKDGv3 69
#