data_6EP # _chem_comp.id 6EP _chem_comp.name "2-{5-[(4-chloro-2-methylphenyl)methoxy]-1H-pyrazol-1-yl}pyridine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H14 Cl N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-23 _chem_comp.pdbx_modified_date 2016-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.764 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 6EP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5IW0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 6EP C10 C1 C 0 1 Y N N N N N -23.912 21.614 1.367 -0.567 3.389 -0.062 C10 6EP 1 6EP C13 C2 C 0 1 N N N N N N -24.882 23.230 3.546 1.749 1.784 -0.020 C13 6EP 2 6EP C15 C3 C 0 1 Y N N N N N -26.017 22.992 5.762 2.435 -0.614 -0.231 C15 6EP 3 6EP C17 C4 C 0 1 Y N N N N N -27.098 24.838 6.807 4.709 -1.294 0.087 C17 6EP 4 6EP C20 C5 C 0 1 Y N N N N N -26.021 25.148 4.671 4.108 1.014 0.305 C20 6EP 5 6EP C21 C6 C 0 1 N N N N N N -25.664 26.065 3.535 4.497 2.444 0.577 C21 6EP 6 6EP C24 C7 C 0 1 Y N N N N N -23.328 17.344 6.076 -3.316 -2.200 -0.565 C24 6EP 7 6EP O01 O1 O 0 1 N N N N N N -24.123 20.156 8.102 -6.208 -0.771 1.031 O01 6EP 8 6EP C02 C8 C 0 1 N N N N N N -23.413 19.172 7.764 -5.498 -1.613 0.519 C02 6EP 9 6EP O03 O2 O 0 1 N N N N N N -22.670 18.531 8.546 -5.936 -2.881 0.398 O03 6EP 10 6EP C04 C9 C 0 1 Y N N N N N -23.432 18.707 6.346 -4.150 -1.245 0.028 C04 6EP 11 6EP C05 C10 C 0 1 Y N N N N N -23.522 19.584 5.245 -3.677 0.064 0.145 C05 6EP 12 6EP C06 C11 C 0 1 Y N N N N N -23.534 19.042 3.939 -2.407 0.364 -0.330 C06 6EP 13 6EP N07 N1 N 0 1 Y N N N N N -23.611 19.926 2.778 -1.919 1.670 -0.221 N07 6EP 14 6EP N08 N2 N 0 1 Y N N N N N -23.125 19.470 1.591 -2.691 2.837 -0.156 N08 6EP 15 6EP C09 C12 C 0 1 Y N N N N N -23.319 20.509 0.722 -1.884 3.861 -0.058 C09 6EP 16 6EP C11 C13 C 0 1 Y N N N N N -24.087 21.233 2.651 -0.609 2.035 -0.167 C11 6EP 17 6EP O12 O3 O 0 1 N N N N N N -24.599 21.858 3.723 0.459 1.199 -0.210 O12 6EP 18 6EP C14 C14 C 0 1 Y N N N N N -25.658 23.812 4.676 2.793 0.698 0.019 C14 6EP 19 6EP C16 C15 C 0 1 Y N N N N N -26.740 23.505 6.831 3.392 -1.610 -0.194 C16 6EP 20 6EP CL1 CL1 CL 0 0 N N N N N N -28.000 25.527 8.132 5.912 -2.545 0.132 CL1 6EP 21 6EP C19 C16 C 0 1 Y N N N N N -26.748 25.644 5.756 5.068 0.020 0.331 C19 6EP 22 6EP N22 N3 N 0 1 Y N N N N N -23.435 17.717 3.669 -1.653 -0.571 -0.884 N22 6EP 23 6EP C23 C17 C 0 1 Y N N N N N -23.339 16.910 4.746 -2.064 -1.818 -1.005 C23 6EP 24 6EP H1 H1 H 0 1 N N N N N N -24.172 22.565 0.927 0.325 3.994 0.001 H1 6EP 25 6EP H2 H2 H 0 1 N N N N N N -23.931 23.776 3.455 1.963 2.465 -0.844 H2 6EP 26 6EP H3 H3 H 0 1 N N N N N N -25.464 23.352 2.621 1.763 2.336 0.920 H3 6EP 27 6EP H4 H4 H 0 1 N N N N N N -25.727 21.952 5.764 1.407 -0.860 -0.450 H4 6EP 28 6EP H5 H5 H 0 1 N N N N N N -26.464 26.043 2.780 4.479 2.628 1.651 H5 6EP 29 6EP H6 H6 H 0 1 N N N N N N -25.547 27.091 3.915 5.501 2.627 0.194 H6 6EP 30 6EP H7 H7 H 0 1 N N N N N N -24.720 25.733 3.079 3.792 3.113 0.082 H7 6EP 31 6EP H8 H8 H 0 1 N N N N N N -23.240 16.632 6.883 -3.645 -3.222 -0.673 H8 6EP 32 6EP H9 H9 H 0 1 N N N N N N -22.731 18.904 9.418 -6.822 -3.073 0.733 H9 6EP 33 6EP H10 H10 H 0 1 N N N N N N -23.581 20.652 5.397 -4.290 0.831 0.596 H10 6EP 34 6EP H11 H11 H 0 1 N N N N N N -23.052 20.486 -0.324 -2.183 4.897 0.013 H11 6EP 35 6EP H12 H12 H 0 1 N N N N N N -27.016 22.875 7.663 3.111 -2.635 -0.385 H12 6EP 36 6EP H13 H13 H 0 1 N N N N N N -27.040 26.684 5.766 6.095 0.266 0.554 H13 6EP 37 6EP H14 H14 H 0 1 N N N N N N -23.265 15.847 4.568 -1.416 -2.549 -1.464 H14 6EP 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6EP C09 C10 SING Y N 1 6EP C09 N08 DOUB Y N 2 6EP C10 C11 DOUB Y N 3 6EP N08 N07 SING Y N 4 6EP C11 N07 SING Y N 5 6EP C11 O12 SING N N 6 6EP N07 C06 SING N N 7 6EP C21 C20 SING N N 8 6EP C13 O12 SING N N 9 6EP C13 C14 SING N N 10 6EP N22 C06 DOUB Y N 11 6EP N22 C23 SING Y N 12 6EP C06 C05 SING Y N 13 6EP C20 C14 DOUB Y N 14 6EP C20 C19 SING Y N 15 6EP C14 C15 SING Y N 16 6EP C23 C24 DOUB Y N 17 6EP C05 C04 DOUB Y N 18 6EP C19 C17 DOUB Y N 19 6EP C15 C16 DOUB Y N 20 6EP C24 C04 SING Y N 21 6EP C04 C02 SING N N 22 6EP C17 C16 SING Y N 23 6EP C17 CL1 SING N N 24 6EP C02 O01 DOUB N N 25 6EP C02 O03 SING N N 26 6EP C10 H1 SING N N 27 6EP C13 H2 SING N N 28 6EP C13 H3 SING N N 29 6EP C15 H4 SING N N 30 6EP C21 H5 SING N N 31 6EP C21 H6 SING N N 32 6EP C21 H7 SING N N 33 6EP C24 H8 SING N N 34 6EP O03 H9 SING N N 35 6EP C05 H10 SING N N 36 6EP C09 H11 SING N N 37 6EP C16 H12 SING N N 38 6EP C19 H13 SING N N 39 6EP C23 H14 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 6EP SMILES ACDLabs 12.01 c2c(n(c1cc(ccn1)C(=O)O)nc2)OCc3ccc(Cl)cc3C 6EP InChI InChI 1.03 InChI=1S/C17H14ClN3O3/c1-11-8-14(18)3-2-13(11)10-24-16-5-7-20-21(16)15-9-12(17(22)23)4-6-19-15/h2-9H,10H2,1H3,(H,22,23) 6EP InChIKey InChI 1.03 PSOBPHXKKHPWMU-UHFFFAOYSA-N 6EP SMILES_CANONICAL CACTVS 3.385 Cc1cc(Cl)ccc1COc2ccnn2c3cc(ccn3)C(O)=O 6EP SMILES CACTVS 3.385 Cc1cc(Cl)ccc1COc2ccnn2c3cc(ccn3)C(O)=O 6EP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 Cc1cc(ccc1COc2ccnn2c3cc(ccn3)C(=O)O)Cl 6EP SMILES "OpenEye OEToolkits" 2.0.4 Cc1cc(ccc1COc2ccnn2c3cc(ccn3)C(=O)O)Cl # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 6EP "SYSTEMATIC NAME" ACDLabs 12.01 "2-{5-[(4-chloro-2-methylphenyl)methoxy]-1H-pyrazol-1-yl}pyridine-4-carboxylic acid" 6EP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-[5-[(4-chloranyl-2-methyl-phenyl)methoxy]pyrazol-1-yl]pyridine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 6EP 'Create component' 2016-03-23 RCSB 6EP 'Initial release' 2016-07-27 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal 6EP C10 C 11.711 -4.387 1 6EP C13 C 8.706 -3.500 2 6EP C15 C 6.165 -4.040 3 6EP C17 C 4.427 -2.110 4 6EP C20 C 6.968 -1.569 5 6EP C21 C 8.083 -0.566 6 6EP C24 C 12.461 2.422 7 6EP O01 O 9.863 3.922 8 6EP C02 C 9.863 2.422 9 6EP O03 O 8.564 1.672 10 6EP C04 C 11.162 1.672 11 6EP C05 C 11.162 0.172 12 6EP C06 C 12.461 -0.578 13 6EP N07 N 12.461 -2.078 14 6EP N08 N 13.675 -2.960 15 6EP C09 C 13.211 -4.387 16 6EP C11 C 11.248 -2.960 17 6EP O12 O 9.821 -2.497 18 6EP C14 C 7.280 -3.037 19 6EP C16 C 4.739 -3.577 20 6EP CL1 Cl 3.000 -1.646 21 6EP C19 C 5.541 -1.106 22 6EP N22 N 13.760 0.172 23 6EP C23 C 13.760 1.672 24 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal 6EP C09 C10 SINGLE NONE 1 6EP C09 N08 DOUBLE NONE 2 6EP C10 C11 DOUBLE NONE 3 6EP N08 N07 SINGLE NONE 4 6EP C11 N07 SINGLE NONE 5 6EP C11 O12 SINGLE NONE 6 6EP N07 C06 SINGLE NONE 7 6EP C21 C20 SINGLE NONE 8 6EP C13 O12 SINGLE NONE 9 6EP C13 C14 SINGLE NONE 10 6EP N22 C06 DOUBLE NONE 11 6EP N22 C23 SINGLE NONE 12 6EP C06 C05 SINGLE NONE 13 6EP C20 C14 SINGLE NONE 14 6EP C20 C19 DOUBLE NONE 15 6EP C14 C15 DOUBLE NONE 16 6EP C23 C24 DOUBLE NONE 17 6EP C05 C04 DOUBLE NONE 18 6EP C19 C17 SINGLE NONE 19 6EP C15 C16 SINGLE NONE 20 6EP C24 C04 SINGLE NONE 21 6EP C04 C02 SINGLE NONE 22 6EP C17 C16 DOUBLE NONE 23 6EP C17 CL1 SINGLE NONE 24 6EP C02 O01 DOUBLE NONE 25 6EP C02 O03 SINGLE NONE 26 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys 6EP MurckoScaffold S1 scaffold c1ccc(COc2ccnn2-c2ccccn2)cc1 InChI=1S/C15H13N3O/c1-2-6-13(7-3-1)12-19-15-9-11-17-18(15)14-8-4-5-10-16-14/h1-11H,12H2 NFHZWIAIIJKOBS-UHFFFAOYSA-N 6EP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N 6EP pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N 6EP pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal 6EP C10 S1 1 6EP C13 S1 1 6EP C15 S1 1 6EP C17 S1 1 6EP C20 S1 1 6EP C24 S1 1 6EP C04 S1 1 6EP C05 S1 1 6EP C06 S1 1 6EP N07 S1 1 6EP N08 S1 1 6EP C09 S1 1 6EP C11 S1 1 6EP O12 S1 1 6EP C14 S1 1 6EP C16 S1 1 6EP C19 S1 1 6EP N22 S1 1 6EP C23 S1 1 6EP C15 F1 1 6EP C14 F1 1 6EP C20 F1 1 6EP C19 F1 1 6EP C17 F1 1 6EP C16 F1 1 6EP C09 F2 1 6EP C10 F2 1 6EP C11 F2 1 6EP N07 F2 1 6EP N08 F2 1 6EP C06 F3 1 6EP C05 F3 1 6EP C04 F3 1 6EP C24 F3 1 6EP C23 F3 1 6EP N22 F3 1 # _pdbe_chem_comp_rdkit_properties.comp_id 6EP _pdbe_chem_comp_rdkit_properties.exactmw 343.072 _pdbe_chem_comp_rdkit_properties.amw 343.770 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 1 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6 _pdbe_chem_comp_rdkit_properties.NumHBD 1 _pdbe_chem_comp_rdkit_properties.NumHBA 6 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24 _pdbe_chem_comp_rdkit_properties.NumAtoms 38 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.118 _pdbe_chem_comp_rdkit_properties.NumRings 3 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 3 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 162.596 _pdbe_chem_comp_rdkit_properties.tpsa 77.240 _pdbe_chem_comp_rdkit_properties.CrippenClogP 2.690 _pdbe_chem_comp_rdkit_properties.CrippenMR 86.770 _pdbe_chem_comp_rdkit_properties.chi0v 12.200 _pdbe_chem_comp_rdkit_properties.chi1v 6.451 _pdbe_chem_comp_rdkit_properties.chi2v 2.710 _pdbe_chem_comp_rdkit_properties.chi3v 2.710 _pdbe_chem_comp_rdkit_properties.chi4v 1.645 _pdbe_chem_comp_rdkit_properties.chi0n 25.444 _pdbe_chem_comp_rdkit_properties.chi1n 12.982 _pdbe_chem_comp_rdkit_properties.chi2n 2.521 _pdbe_chem_comp_rdkit_properties.chi3n 2.521 _pdbe_chem_comp_rdkit_properties.chi4n 1.503 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.860 _pdbe_chem_comp_rdkit_properties.kappa1 6.216 _pdbe_chem_comp_rdkit_properties.kappa2 6.718 _pdbe_chem_comp_rdkit_properties.kappa3 3.384 _pdbe_chem_comp_rdkit_properties.Phi 1.740 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id 6EP UniChem ChEMBL CHEMBL3786952 6EP UniChem PDBe 6EP 6EP UniChem SureChEMBL SCHEMBL15778339 6EP UniChem BindingDb 191600 6EP UniChem ChemicalBook CB55582366 6EP UniChem PubChem 74766595 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 6EP C10 0.596 -2.411 -0.029 ETKDGv3 1 6EP C13 1.400 -0.028 1.600 ETKDGv3 2 6EP C15 1.694 1.317 -0.450 ETKDGv3 3 6EP C17 3.741 1.415 -1.768 ETKDGv3 4 6EP C20 3.668 0.046 0.268 ETKDGv3 5 6EP C21 4.338 -0.865 1.262 ETKDGv3 6 6EP C24 -5.199 0.321 0.414 ETKDGv3 7 6EP O01 -5.050 3.126 0.980 ETKDGv3 8 6EP C02 -3.951 2.524 0.843 ETKDGv3 9 6EP O03 -2.762 3.238 0.972 ETKDGv3 10 6EP C04 -3.929 1.075 0.551 ETKDGv3 11 6EP C05 -2.765 0.421 0.389 ETKDGv3 12 6EP C06 -2.769 -1.033 0.088 ETKDGv3 13 6EP N07 -1.548 -1.764 -0.098 ETKDGv3 14 6EP N08 -1.464 -2.970 -0.799 ETKDGv3 15 6EP C09 -0.230 -3.360 -0.778 ETKDGv3 16 6EP C11 -0.241 -1.465 0.378 ETKDGv3 17 6EP O12 0.075 -0.362 1.184 ETKDGv3 18 6EP C14 2.234 0.453 0.432 ETKDGv3 19 6EP C16 2.475 1.809 -1.600 ETKDGv3 20 6EP CL1 4.671 1.994 -3.137 ETKDGv3 21 6EP C19 4.364 0.499 -0.792 ETKDGv3 22 6EP N22 -3.908 -1.653 -0.046 ETKDGv3 23 6EP C23 -5.167 -0.982 0.121 ETKDGv3 24 6EP H1 1.654 -2.484 0.176 ETKDGv3 25 6EP H2 1.848 -0.906 2.106 ETKDGv3 26 6EP H3 1.339 0.791 2.347 ETKDGv3 27 6EP H4 0.672 1.658 -0.337 ETKDGv3 28 6EP H5 5.429 -0.958 1.072 ETKDGv3 29 6EP H6 4.209 -0.462 2.288 ETKDGv3 30 6EP H7 3.890 -1.878 1.202 ETKDGv3 31 6EP H8 -6.153 0.817 0.539 ETKDGv3 32 6EP H9 -2.770 4.231 1.173 ETKDGv3 33 6EP H10 -1.829 0.957 0.443 ETKDGv3 34 6EP H11 0.116 -4.270 -1.248 ETKDGv3 35 6EP H12 2.013 2.487 -2.306 ETKDGv3 36 6EP H13 5.398 0.210 -0.940 ETKDGv3 37 6EP H14 -6.089 -1.538 0.011 ETKDGv3 38 #