data_6ES
#
_chem_comp.id 6ES
_chem_comp.name
"(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4S,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-3-(pentanoyloxy)propan-2-yl decanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H45 O13 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-03-23
_chem_comp.pdbx_modified_date 2016-05-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 572.580
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6ES
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5IRZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6ES C01 C1 C 0 1 N N N N N N 129.984 136.597 102.482 -4.111 4.807 -3.600 C01 6ES 1
6ES C02 C2 C 0 1 N N N N N N 128.543 136.501 102.957 -3.641 3.521 -2.918 C02 6ES 2
6ES C03 C3 C 0 1 N N N N N N 128.402 136.843 104.426 -2.696 3.870 -1.766 C03 6ES 3
6ES C04 C4 C 0 1 N N N N N N 126.956 136.929 104.874 -2.226 2.584 -1.084 C04 6ES 4
6ES C05 C5 C 0 1 N N N N N N 126.669 138.132 105.750 -1.295 2.928 0.051 C05 6ES 5
6ES O06 O1 O 0 1 N N N N N N 127.568 138.786 106.138 -1.035 4.084 0.289 O06 6ES 6
6ES O07 O2 O 0 1 N N N N N N 125.359 138.477 106.077 -0.756 1.951 0.796 O07 6ES 7
6ES C08 C6 C 0 1 N N N N N N 125.227 138.910 107.391 0.131 2.356 1.872 C08 6ES 8
6ES C09 C7 C 0 1 N N S N N N 124.140 139.959 107.453 0.644 1.115 2.605 C09 6ES 9
6ES C10 C8 C 0 1 N N N N N N 124.177 140.815 108.710 -0.544 0.274 3.078 C10 6ES 10
6ES O11 O3 O 0 1 N N N N N N 125.473 141.113 109.105 -1.386 -0.029 1.964 O11 6ES 11
6ES P12 P1 P 0 1 N N N N N N 125.673 142.585 109.797 -2.733 -0.900 2.095 P12 6ES 12
6ES O13 O4 O 0 1 N N N N N N 124.337 143.173 110.142 -3.801 -0.105 3.001 O13 6ES 13
6ES O14 O5 O 0 1 N N N N N N 126.437 143.477 108.869 -2.420 -2.201 2.729 O14 6ES 14
6ES O15 O6 O 0 1 N N N N N N 126.572 142.495 111.148 -3.354 -1.153 0.631 O15 6ES 15
6ES C16 C9 C 0 1 N N N N N N 125.990 141.917 112.247 -4.495 -1.982 0.402 C16 6ES 16
6ES C17 C10 C 0 1 N N S N N N 126.286 140.451 112.101 -5.608 -1.151 -0.240 C17 6ES 17
6ES C18 C11 C 0 1 N N S N N N 126.212 139.678 113.388 -5.116 -0.581 -1.572 C18 6ES 18
6ES C19 C12 C 0 1 N N N N N N 127.049 140.328 114.462 -4.733 -1.729 -2.507 C19 6ES 19
6ES C20 C13 C 0 1 N N S N N N 126.560 141.729 114.714 -3.620 -2.560 -1.866 C20 6ES 20
6ES C21 C14 C 0 1 N N R N N N 126.647 142.549 113.457 -4.112 -3.130 -0.534 C21 6ES 21
6ES O22 O7 O 0 1 N N N N N N 127.990 142.650 113.143 -3.072 -3.906 0.065 O22 6ES 22
6ES O23 O8 O 0 1 N N N N N N 125.220 141.682 115.054 -3.261 -3.632 -2.740 O23 6ES 23
6ES O24 O9 O 0 1 N N N N N N 128.354 140.389 113.996 -4.273 -1.197 -3.751 O24 6ES 24
6ES O25 O10 O 0 1 N N N N N N 126.728 138.413 113.136 -3.975 0.248 -1.343 O25 6ES 25
6ES O26 O11 O 0 1 N N N N N N 127.599 140.338 111.691 -5.967 -0.078 0.634 O26 6ES 26
6ES O27 O12 O 0 1 N N N N N N 124.302 140.785 106.350 1.467 0.327 1.704 O27 6ES 27
6ES C28 C15 C 0 1 N N N N N N 123.113 140.951 105.644 2.780 0.604 1.679 C28 6ES 28
6ES O29 O13 O 0 1 N N N N N N 122.128 141.241 106.216 3.227 1.476 2.385 O29 6ES 29
6ES C30 C16 C 0 1 N N N N N N 123.063 140.739 104.142 3.696 -0.173 0.769 C30 6ES 30
6ES C31 C17 C 0 1 N N N N N N 122.771 139.287 103.785 5.129 0.337 0.932 C31 6ES 31
6ES C32 C18 C 0 1 N N N N N N 123.105 138.929 102.344 6.060 -0.451 0.008 C32 6ES 32
6ES C33 C19 C 0 1 N N N N N N 123.995 137.708 102.182 7.493 0.059 0.171 C33 6ES 33
6ES C34 C20 C 0 1 N N N N N N 124.125 137.292 100.733 8.423 -0.729 -0.753 C34 6ES 34
6ES C35 C21 C 0 1 N N N N N N 125.488 137.498 100.093 9.857 -0.219 -0.590 C35 6ES 35
6ES C36 C22 C 0 1 N N N N N N 125.310 137.915 98.639 10.787 -1.008 -1.513 C36 6ES 36
6ES C37 C23 C 0 1 N N N N N N 126.554 137.841 97.777 12.220 -0.497 -1.350 C37 6ES 37
6ES C38 C24 C 0 1 N N N N N N 126.187 138.011 96.305 13.151 -1.286 -2.274 C38 6ES 38
6ES H012 H1 H 0 0 N N N N N N 130.036 136.341 101.414 -3.248 5.348 -3.989 H012 6ES 39
6ES H013 H2 H 0 0 N N N N N N 130.352 137.623 102.631 -4.784 4.558 -4.420 H013 6ES 40
6ES H011 H3 H 0 0 N N N N N N 130.607 135.897 103.058 -4.635 5.431 -2.877 H011 6ES 41
6ES H021 H4 H 0 0 N N N N N N 127.929 137.200 102.370 -4.503 2.980 -2.529 H021 6ES 42
6ES H022 H5 H 0 0 N N N N N N 128.184 135.474 102.796 -3.116 2.896 -3.641 H022 6ES 43
6ES H031 H6 H 0 0 N N N N N N 128.907 136.066 105.018 -1.833 4.411 -2.155 H031 6ES 44
6ES H032 H7 H 0 0 N N N N N N 128.885 137.814 104.608 -3.220 4.495 -1.043 H032 6ES 45
6ES H042 H8 H 0 0 N N N N N N 126.317 136.987 103.981 -3.089 2.043 -0.695 H042 6ES 46
6ES H041 H9 H 0 0 N N N N N N 126.712 136.018 105.441 -1.702 1.959 -1.807 H041 6ES 47
6ES H082 H10 H 0 0 N N N N N N 124.957 138.060 108.035 0.975 2.908 1.458 H082 6ES 48
6ES H081 H11 H 0 0 N N N N N N 126.178 139.343 107.735 -0.412 2.992 2.571 H081 6ES 49
6ES H091 H12 H 0 0 N N N N N N 123.165 139.453 107.408 1.238 1.421 3.466 H091 6ES 50
6ES H102 H13 H 0 0 N N N N N N 123.642 141.756 108.513 -0.179 -0.652 3.521 H102 6ES 51
6ES H101 H14 H 0 0 N N N N N N 123.675 140.271 109.524 -1.112 0.834 3.821 H101 6ES 52
6ES H1 H15 H 0 1 N N N N N N 124.234 144.007 109.699 -4.053 0.758 2.645 H1 6ES 53
6ES H161 H16 H 0 0 N N N N N N 124.903 142.084 112.278 -4.846 -2.388 1.350 H161 6ES 54
6ES H171 H17 H 0 0 N N N N N N 125.598 140.008 111.366 -6.479 -1.783 -0.415 H171 6ES 55
6ES H181 H18 H 0 0 N N N N N N 125.166 139.621 113.723 -5.909 0.011 -2.029 H181 6ES 56
6ES H191 H19 H 0 0 N N N N N N 126.981 139.740 115.389 -5.603 -2.362 -2.682 H191 6ES 57
6ES H201 H20 H 0 0 N N N N N N 127.163 142.197 115.506 -2.749 -1.928 -1.691 H201 6ES 58
6ES H211 H21 H 0 0 N N N N N N 126.204 143.540 113.635 -4.982 -3.762 -0.709 H211 6ES 59
6ES H221 H22 H 0 0 N N N N N N 128.457 143.043 113.871 -2.778 -4.653 -0.474 H221 6ES 60
6ES H231 H23 H 0 0 N N N N N N 125.112 141.171 115.848 -2.940 -3.344 -3.605 H231 6ES 61
6ES H241 H24 H 0 0 N N N N N N 128.907 140.795 114.653 -4.012 -1.870 -4.395 H241 6ES 62
6ES H251 H25 H 0 0 N N N N N N 126.697 137.894 113.931 -3.609 0.644 -2.145 H251 6ES 63
6ES H261 H26 H 0 0 N N N N N N 127.821 139.420 111.588 -6.669 0.491 0.290 H261 6ES 64
6ES H302 H27 H 0 0 N N N N N N 124.034 141.024 103.710 3.655 -1.231 1.029 H302 6ES 65
6ES H301 H28 H 0 0 N N N N N N 122.272 141.376 103.719 3.379 -0.041 -0.266 H301 6ES 66
6ES H312 H29 H 0 0 N N N N N N 121.700 139.098 103.950 5.170 1.395 0.672 H312 6ES 67
6ES H311 H30 H 0 0 N N N N N N 123.364 138.641 104.449 5.447 0.205 1.966 H311 6ES 68
6ES H322 H31 H 0 0 N N N N N N 123.617 139.789 101.887 6.019 -1.509 0.268 H322 6ES 69
6ES H321 H32 H 0 0 N N N N N N 122.162 138.738 101.811 5.743 -0.319 -1.026 H321 6ES 70
6ES H332 H33 H 0 0 N N N N N N 123.562 136.874 102.754 7.534 1.117 -0.089 H332 6ES 71
6ES H331 H34 H 0 0 N N N N N N 124.995 137.942 102.576 7.810 -0.073 1.206 H331 6ES 72
6ES H342 H35 H 0 0 N N N N N N 123.391 137.869 100.151 8.383 -1.787 -0.493 H342 6ES 73
6ES H341 H36 H 0 0 N N N N N N 123.883 136.221 100.669 8.106 -0.597 -1.787 H341 6ES 74
6ES H351 H37 H 0 0 N N N N N N 126.059 136.559 100.138 9.897 0.839 -0.850 H351 6ES 75
6ES H352 H38 H 0 0 N N N N N N 126.033 138.285 100.636 10.174 -0.352 0.445 H352 6ES 76
6ES H362 H39 H 0 0 N N N N N N 124.952 138.955 98.627 10.746 -2.066 -1.253 H362 6ES 77
6ES H361 H40 H 0 0 N N N N N N 124.549 137.260 98.190 10.470 -0.875 -2.548 H361 6ES 78
6ES H371 H41 H 0 0 N N N N N N 127.038 136.863 97.920 12.261 0.560 -1.610 H371 6ES 79
6ES H372 H42 H 0 0 N N N N N N 127.249 138.641 98.073 12.537 -0.630 -0.316 H372 6ES 80
6ES H382 H43 H 0 0 N N N N N N 127.098 137.955 95.691 13.110 -2.344 -2.014 H382 6ES 81
6ES H381 H44 H 0 0 N N N N N N 125.493 137.211 96.005 12.833 -1.154 -3.308 H381 6ES 82
6ES H383 H45 H 0 0 N N N N N N 125.705 138.989 96.158 14.172 -0.922 -2.158 H383 6ES 83
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6ES C38 C37 SING N N 1
6ES C37 C36 SING N N 2
6ES C36 C35 SING N N 3
6ES C35 C34 SING N N 4
6ES C34 C33 SING N N 5
6ES C33 C32 SING N N 6
6ES C32 C31 SING N N 7
6ES C01 C02 SING N N 8
6ES C02 C03 SING N N 9
6ES C31 C30 SING N N 10
6ES C30 C28 SING N N 11
6ES C03 C04 SING N N 12
6ES C04 C05 SING N N 13
6ES C28 O29 DOUB N N 14
6ES C28 O27 SING N N 15
6ES C05 O07 SING N N 16
6ES C05 O06 DOUB N N 17
6ES O07 C08 SING N N 18
6ES O27 C09 SING N N 19
6ES C08 C09 SING N N 20
6ES C09 C10 SING N N 21
6ES C10 O11 SING N N 22
6ES O14 P12 DOUB N N 23
6ES O11 P12 SING N N 24
6ES P12 O13 SING N N 25
6ES P12 O15 SING N N 26
6ES O15 C16 SING N N 27
6ES O26 C17 SING N N 28
6ES C17 C16 SING N N 29
6ES C17 C18 SING N N 30
6ES C16 C21 SING N N 31
6ES O25 C18 SING N N 32
6ES O22 C21 SING N N 33
6ES C18 C19 SING N N 34
6ES C21 C20 SING N N 35
6ES O24 C19 SING N N 36
6ES C19 C20 SING N N 37
6ES C20 O23 SING N N 38
6ES C01 H012 SING N N 39
6ES C01 H013 SING N N 40
6ES C01 H011 SING N N 41
6ES C02 H021 SING N N 42
6ES C02 H022 SING N N 43
6ES C03 H031 SING N N 44
6ES C03 H032 SING N N 45
6ES C04 H042 SING N N 46
6ES C04 H041 SING N N 47
6ES C08 H082 SING N N 48
6ES C08 H081 SING N N 49
6ES C09 H091 SING N N 50
6ES C10 H102 SING N N 51
6ES C10 H101 SING N N 52
6ES O13 H1 SING N N 53
6ES C16 H161 SING N N 54
6ES C17 H171 SING N N 55
6ES C18 H181 SING N N 56
6ES C19 H191 SING N N 57
6ES C20 H201 SING N N 58
6ES C21 H211 SING N N 59
6ES O22 H221 SING N N 60
6ES O23 H231 SING N N 61
6ES O24 H241 SING N N 62
6ES O25 H251 SING N N 63
6ES O26 H261 SING N N 64
6ES C30 H302 SING N N 65
6ES C30 H301 SING N N 66
6ES C31 H312 SING N N 67
6ES C31 H311 SING N N 68
6ES C32 H322 SING N N 69
6ES C32 H321 SING N N 70
6ES C33 H332 SING N N 71
6ES C33 H331 SING N N 72
6ES C34 H342 SING N N 73
6ES C34 H341 SING N N 74
6ES C35 H351 SING N N 75
6ES C35 H352 SING N N 76
6ES C36 H362 SING N N 77
6ES C36 H361 SING N N 78
6ES C37 H371 SING N N 79
6ES C37 H372 SING N N 80
6ES C38 H382 SING N N 81
6ES C38 H381 SING N N 82
6ES C38 H383 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6ES SMILES ACDLabs 12.01 CCCCC(OCC(COP(O)(OC1C(C(C(C(C1O)O)O)O)O)=O)OC(=O)CCCCCCCCC)=O
6ES InChI InChI 1.03 InChI=1S/C24H45O13P/c1-3-5-7-8-9-10-11-13-18(26)36-16(14-34-17(25)12-6-4-2)15-35-38(32,33)37-24-22(30)20(28)19(27)21(29)23(24)31/h16,19-24,27-31H,3-15H2,1-2H3,(H,32,33)/t16-,19-,20-,21-,22+,23-,24+/m0/s1
6ES InChIKey InChI 1.03 YWVFSDQOBMMIAJ-CLASQLQRSA-N
6ES SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCC(=O)O[C@@H](COC(=O)CCCC)CO[P](O)(=O)O[C@@H]1[C@H](O)[C@@H](O)[C@H](O)[C@H](O)[C@@H]1O
6ES SMILES CACTVS 3.385 CCCCCCCCCC(=O)O[CH](COC(=O)CCCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O
6ES SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 CCCCCCCCCC(=O)O[C@@H](COC(=O)CCCC)COP(=O)(O)OC1[C@@H]([C@H](C([C@@H]([C@@H]1O)O)O)O)O
6ES SMILES "OpenEye OEToolkits" 2.0.4 CCCCCCCCCC(=O)OC(COC(=O)CCCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6ES "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4S,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-3-(pentanoyloxy)propan-2-yl decanoate"
6ES "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{S})-1-[oxidanyl-[(2~{S},3~{S},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-3-pentanoyloxy-propan-2-yl] decanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6ES 'Create component' 2016-03-23 RCSB
6ES 'Initial release' 2016-05-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6ES C01 C 4.389 -7.249 1
6ES C02 C 5.686 -6.497 2
6ES C03 C 5.684 -4.998 3
6ES C04 C 6.982 -4.245 4
6ES C05 C 6.979 -2.746 5
6ES O06 O 8.275 -1.992 6
6ES O07 O 5.679 -2.002 7
6ES C08 C 4.384 -2.758 8
6ES C09 C 3.088 -2.012 9
6ES C10 C 3.091 -0.520 10
6ES O11 O 1.800 0.217 11
6ES P12 P 1.789 1.706 12
6ES O13 O 3.288 1.723 13
6ES O14 O 0.316 1.678 14
6ES O15 O 1.766 3.219 15
6ES C16 C 0.453 3.980 16
6ES C17 C 0.466 5.480 17
6ES C18 C -0.823 6.242 18
6ES C19 C -2.129 5.498 19
6ES C20 C -2.148 3.998 20
6ES C21 C -0.856 3.241 21
6ES O22 O -0.880 1.768 22
6ES O23 O -3.452 3.261 23
6ES O24 O -3.423 6.260 24
6ES O25 O -0.812 7.740 25
6ES O26 O 1.773 6.220 26
6ES O27 O 1.786 -2.761 27
6ES C28 C 0.484 -2.009 28
6ES O29 O 0.482 -0.509 29
6ES C30 C -0.815 -2.761 30
6ES C31 C -2.116 -2.012 31
6ES C32 C -3.414 -2.765 32
6ES C33 C -4.715 -2.017 33
6ES C34 C -6.013 -2.770 34
6ES C35 C -7.313 -2.023 35
6ES C36 C -8.611 -2.775 36
6ES C37 C -9.911 -2.028 37
6ES C38 C -11.209 -2.781 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6ES C38 C37 SINGLE NONE 1
6ES C37 C36 SINGLE NONE 2
6ES C36 C35 SINGLE NONE 3
6ES C35 C34 SINGLE NONE 4
6ES C34 C33 SINGLE NONE 5
6ES C33 C32 SINGLE NONE 6
6ES C32 C31 SINGLE NONE 7
6ES C01 C02 SINGLE NONE 8
6ES C02 C03 SINGLE NONE 9
6ES C31 C30 SINGLE NONE 10
6ES C30 C28 SINGLE NONE 11
6ES C03 C04 SINGLE NONE 12
6ES C04 C05 SINGLE NONE 13
6ES C28 O29 DOUBLE NONE 14
6ES C28 O27 SINGLE NONE 15
6ES C05 O07 SINGLE NONE 16
6ES C05 O06 DOUBLE NONE 17
6ES O07 C08 SINGLE NONE 18
6ES O27 C09 SINGLE NONE 19
6ES C09 C08 SINGLE BEGINDASH 20
6ES C09 C10 SINGLE NONE 21
6ES C10 O11 SINGLE NONE 22
6ES O14 P12 DOUBLE NONE 23
6ES O11 P12 SINGLE NONE 24
6ES P12 O13 SINGLE BEGINWEDGE 25
6ES P12 O15 SINGLE NONE 26
6ES C16 O15 SINGLE BEGINDASH 27
6ES C17 O26 SINGLE BEGINDASH 28
6ES C17 C16 SINGLE NONE 29
6ES C17 C18 SINGLE NONE 30
6ES C16 C21 SINGLE NONE 31
6ES C18 O25 SINGLE BEGINDASH 32
6ES C21 O22 SINGLE BEGINDASH 33
6ES C18 C19 SINGLE NONE 34
6ES C21 C20 SINGLE NONE 35
6ES C19 O24 SINGLE BEGINDASH 36
6ES C19 C20 SINGLE NONE 37
6ES C20 O23 SINGLE BEGINWEDGE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6ES MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
6ES cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
6ES phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6ES C16 S1 1
6ES C17 S1 1
6ES C18 S1 1
6ES C19 S1 1
6ES C20 S1 1
6ES C21 S1 1
6ES C16 F1 1
6ES C17 F1 1
6ES C18 F1 1
6ES C19 F1 1
6ES C20 F1 1
6ES C21 F1 1
6ES O11 F2 1
6ES P12 F2 1
6ES O14 F2 1
6ES O13 F2 1
6ES O15 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6ES
_pdbe_chem_comp_rdkit_properties.exactmw 572.260
_pdbe_chem_comp_rdkit_properties.amw 572.585
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 27
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 83
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.917
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 286.963
_pdbe_chem_comp_rdkit_properties.tpsa 209.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.093
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.658
_pdbe_chem_comp_rdkit_properties.chi0v 18.649
_pdbe_chem_comp_rdkit_properties.chi1v 10.095
_pdbe_chem_comp_rdkit_properties.chi2v 3.609
_pdbe_chem_comp_rdkit_properties.chi3v 3.609
_pdbe_chem_comp_rdkit_properties.chi4v 2.171
_pdbe_chem_comp_rdkit_properties.chi0n 62.754
_pdbe_chem_comp_rdkit_properties.chi1n 30.583
_pdbe_chem_comp_rdkit_properties.chi2n 2.888
_pdbe_chem_comp_rdkit_properties.chi3n 2.888
_pdbe_chem_comp_rdkit_properties.chi4n 1.549
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.150
_pdbe_chem_comp_rdkit_properties.kappa1 7.069
_pdbe_chem_comp_rdkit_properties.kappa2 18.246
_pdbe_chem_comp_rdkit_properties.kappa3 12.802
_pdbe_chem_comp_rdkit_properties.Phi 3.394
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6ES UniChem PDBe 6ES
6ES UniChem ZINC ZINC000584904963
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6ES C01 -0.423 2.772 -1.802 ETKDGv3 1
6ES C02 -1.561 3.596 -1.198 ETKDGv3 2
6ES C03 -1.353 5.114 -1.351 ETKDGv3 3
6ES C04 -0.081 5.657 -0.681 ETKDGv3 4
6ES C05 -0.086 5.447 0.802 ETKDGv3 5
6ES O06 -0.468 6.374 1.567 ETKDGv3 6
6ES O07 0.309 4.211 1.320 ETKDGv3 7
6ES C08 0.434 3.961 2.716 ETKDGv3 8
6ES C09 0.729 2.476 2.960 ETKDGv3 9
6ES C10 -0.502 1.608 2.683 ETKDGv3 10
6ES O11 -0.183 0.270 2.985 ETKDGv3 11
6ES P12 -1.385 -0.750 2.337 ETKDGv3 12
6ES O13 -2.908 -0.307 2.934 ETKDGv3 13
6ES O14 -1.080 -2.166 2.772 ETKDGv3 14
6ES O15 -1.350 -0.653 0.629 ETKDGv3 15
6ES C16 -2.305 -1.535 0.061 ETKDGv3 16
6ES C17 -3.660 -0.800 -0.200 ETKDGv3 17
6ES C18 -4.473 -1.375 -1.394 ETKDGv3 18
6ES C19 -4.191 -2.882 -1.565 ETKDGv3 19
6ES C20 -2.701 -3.140 -1.911 ETKDGv3 20
6ES C21 -1.717 -2.140 -1.234 ETKDGv3 21
6ES O22 -1.385 -1.121 -2.144 ETKDGv3 22
6ES O23 -2.357 -4.468 -1.599 ETKDGv3 23
6ES O24 -5.003 -3.421 -2.576 ETKDGv3 24
6ES O25 -4.166 -0.687 -2.582 ETKDGv3 25
6ES O26 -3.496 0.592 -0.325 ETKDGv3 26
6ES O27 1.782 2.033 2.106 ETKDGv3 27
6ES C28 3.140 2.257 2.342 ETKDGv3 28
6ES O29 3.523 2.974 3.306 ETKDGv3 29
6ES C30 4.142 1.568 1.468 ETKDGv3 30
6ES C31 4.697 0.288 2.116 ETKDGv3 31
6ES C32 3.630 -0.707 2.623 ETKDGv3 32
6ES C33 2.612 -1.173 1.567 ETKDGv3 33
6ES C34 3.246 -1.985 0.431 ETKDGv3 34
6ES C35 2.160 -2.508 -0.516 ETKDGv3 35
6ES C36 2.762 -3.305 -1.677 ETKDGv3 36
6ES C37 1.661 -3.812 -2.617 ETKDGv3 37
6ES C38 2.249 -4.606 -3.779 ETKDGv3 38
6ES H012 -0.219 3.095 -2.845 ETKDGv3 39
6ES H013 0.499 2.870 -1.194 ETKDGv3 40
6ES H011 -0.708 1.701 -1.814 ETKDGv3 41
6ES H021 -1.692 3.328 -0.129 ETKDGv3 42
6ES H022 -2.504 3.323 -1.720 ETKDGv3 43
6ES H031 -1.317 5.365 -2.433 ETKDGv3 44
6ES H032 -2.237 5.638 -0.924 ETKDGv3 45
6ES H042 -0.008 6.746 -0.892 ETKDGv3 46
6ES H041 0.823 5.186 -1.120 ETKDGv3 47
6ES H082 -0.501 4.253 3.243 ETKDGv3 48
6ES H081 1.267 4.575 3.122 ETKDGv3 49
6ES H091 1.020 2.333 4.025 ETKDGv3 50
6ES H102 -1.340 1.947 3.333 ETKDGv3 51
6ES H101 -0.784 1.736 1.612 ETKDGv3 52
6ES H1 -3.142 0.526 2.454 ETKDGv3 53
6ES H161 -2.514 -2.413 0.718 ETKDGv3 54
6ES H171 -4.279 -0.963 0.709 ETKDGv3 55
6ES H181 -5.555 -1.235 -1.161 ETKDGv3 56
6ES H191 -4.431 -3.389 -0.599 ETKDGv3 57
6ES H201 -2.583 -3.032 -3.012 ETKDGv3 58
6ES H211 -0.790 -2.699 -0.965 ETKDGv3 59
6ES H221 -0.503 -0.759 -1.870 ETKDGv3 60
6ES H231 -2.391 -4.563 -0.611 ETKDGv3 61
6ES H241 -5.924 -3.477 -2.208 ETKDGv3 62
6ES H251 -4.919 -0.841 -3.210 ETKDGv3 63
6ES H261 -2.836 0.755 -1.047 ETKDGv3 64
6ES H302 3.675 1.323 0.490 ETKDGv3 65
6ES H301 4.984 2.263 1.263 ETKDGv3 66
6ES H312 5.365 -0.222 1.389 ETKDGv3 67
6ES H311 5.333 0.579 2.980 ETKDGv3 68
6ES H322 3.074 -0.243 3.466 ETKDGv3 69
6ES H321 4.148 -1.598 3.040 ETKDGv3 70
6ES H332 2.064 -0.307 1.144 ETKDGv3 71
6ES H331 1.861 -1.810 2.084 ETKDGv3 72
6ES H342 3.812 -2.842 0.856 ETKDGv3 73
6ES H341 3.947 -1.341 -0.142 ETKDGv3 74
6ES H351 1.589 -1.645 -0.923 ETKDGv3 75
6ES H352 1.461 -3.160 0.053 ETKDGv3 76
6ES H362 3.331 -4.171 -1.273 ETKDGv3 77
6ES H361 3.462 -2.655 -2.247 ETKDGv3 78
6ES H371 1.088 -2.951 -3.024 ETKDGv3 79
6ES H372 0.959 -4.466 -2.054 ETKDGv3 80
6ES H382 2.936 -3.967 -4.374 ETKDGv3 81
6ES H381 1.430 -4.959 -4.440 ETKDGv3 82
6ES H383 2.806 -5.489 -3.400 ETKDGv3 83
#