data_6H3
#
_chem_comp.id 6H3
_chem_comp.name N-{2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]phenyl}propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H28 Cl N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-04-08
_chem_comp.pdbx_modified_date 2017-02-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.978
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6H3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5J7S
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6H3 C18 C1 C 0 1 Y N N N N N -11.356 -48.093 -15.595 1.561 2.094 0.387 C18 6H3 1
6H3 C13 C2 C 0 1 Y N N N N N -16.047 -47.613 -17.631 -2.315 -0.879 -0.175 C13 6H3 2
6H3 C12 C3 C 0 1 Y N N N N N -15.476 -48.462 -18.586 -2.786 0.240 -0.849 C12 6H3 3
6H3 C17 C4 C 0 1 Y N N N N N -11.839 -46.842 -15.199 0.191 2.268 0.354 C17 6H3 4
6H3 C15 C5 C 0 1 Y N N N N N -13.830 -47.304 -16.297 -0.082 -0.008 0.103 C15 6H3 5
6H3 C11 C6 C 0 1 Y N N N N N -16.284 -49.180 -19.474 -4.144 0.443 -0.985 C11 6H3 6
6H3 C10 C7 C 0 1 Y N N N N N -17.427 -47.478 -17.578 -3.211 -1.793 0.363 C10 6H3 7
6H3 C22 C8 C 0 1 Y N N N N N -12.409 -51.046 -17.795 3.936 -0.732 0.289 C22 6H3 8
6H3 C20 C9 C 0 1 Y N N N N N -12.172 -48.937 -16.360 2.072 0.799 0.264 C20 6H3 9
6H3 C01 C10 C 0 1 N N N N N N -20.926 -52.326 -22.424 -10.514 0.398 0.211 C01 6H3 10
6H3 N02 N1 N 0 1 N N N N N N -20.285 -51.786 -21.452 -9.068 0.182 0.355 N02 6H3 11
6H3 C03 C11 C 0 1 N N N N N N -20.684 -50.485 -21.298 -8.307 1.263 -0.285 C03 6H3 12
6H3 C04 C12 C 0 1 N N N N N N -19.928 -49.781 -20.173 -6.812 1.043 -0.043 C04 6H3 13
6H3 C05 C13 C 0 1 N N N N N N -18.939 -51.893 -21.664 -8.674 -1.127 -0.186 C05 6H3 14
6H3 C06 C14 C 0 1 N N N N N N -18.120 -51.187 -20.584 -7.179 -1.347 0.055 C06 6H3 15
6H3 N07 N2 N 0 1 N N N N N N -18.491 -49.800 -20.356 -6.418 -0.265 -0.585 N07 6H3 16
6H3 C08 C15 C 0 1 Y N N N N N -17.659 -49.033 -19.425 -5.041 -0.471 -0.447 C08 6H3 17
6H3 C09 C16 C 0 1 Y N N N N N -18.243 -48.190 -18.475 -4.570 -1.587 0.232 C09 6H3 18
6H3 N14 N3 N 0 1 N N N N N N -15.192 -46.853 -16.680 -0.936 -1.089 -0.042 N14 6H3 19
6H3 N16 N4 N 0 1 Y N N N N N -13.076 -46.494 -15.571 -0.594 1.209 0.213 N16 6H3 20
6H3 CL19 CL1 CL 0 0 N N N N N N -9.714 -48.602 -15.126 2.624 3.454 0.570 CL19 6H3 21
6H3 N21 N5 N 0 1 N N N N N N -11.685 -50.265 -16.799 3.440 0.577 0.292 N21 6H3 22
6H3 C23 C17 C 0 1 Y N N N N N -13.759 -51.279 -17.628 3.132 -1.782 0.708 C23 6H3 23
6H3 C24 C18 C 0 1 Y N N N N N -14.472 -52.020 -18.561 3.624 -3.073 0.704 C24 6H3 24
6H3 C25 C19 C 0 1 Y N N N N N -13.820 -52.533 -19.679 4.918 -3.323 0.285 C25 6H3 25
6H3 C26 C20 C 0 1 Y N N N N N -12.465 -52.303 -19.854 5.727 -2.283 -0.133 C26 6H3 26
6H3 C27 C21 C 0 1 Y N N N N N -11.753 -51.567 -18.926 5.239 -0.985 -0.139 C27 6H3 27
6H3 N28 N6 N 0 1 N N N N N N -10.308 -51.354 -19.159 6.057 0.071 -0.563 N28 6H3 28
6H3 C29 C22 C 0 1 N N N N N N -9.343 -51.571 -18.059 7.396 -0.021 -0.436 C29 6H3 29
6H3 C30 C23 C 0 1 N N N N N N -7.838 -51.367 -18.301 8.270 1.147 -0.813 C30 6H3 30
6H3 C31 C24 C 0 1 N N N N N N -7.576 -50.007 -18.945 9.737 0.784 -0.575 C31 6H3 31
6H3 O32 O1 O 0 1 N N N N N N -9.727 -51.898 -16.992 7.897 -1.043 -0.018 O32 6H3 32
6H3 N33 N7 N 0 1 Y N N N N N -13.389 -48.508 -16.685 1.226 -0.216 0.120 N33 6H3 33
6H3 H1 H1 H 0 1 N N N N N N -14.402 -48.564 -18.638 -2.089 0.951 -1.267 H1 6H3 34
6H3 H2 H2 H 0 1 N N N N N N -11.229 -46.174 -14.608 -0.237 3.256 0.443 H2 6H3 35
6H3 H3 H3 H 0 1 N N N N N N -15.836 -49.847 -20.196 -4.510 1.314 -1.509 H3 6H3 36
6H3 H4 H4 H 0 1 N N N N N N -17.876 -46.824 -16.845 -2.845 -2.666 0.884 H4 6H3 37
6H3 H5 H5 H 0 1 N N N N N N -22.008 -52.236 -22.246 -10.772 0.428 -0.848 H5 6H3 38
6H3 H6 H6 H 0 1 N N N N N N -20.665 -51.816 -23.363 -11.053 -0.417 0.693 H6 6H3 39
6H3 H7 H7 H 0 1 N N N N N N -20.654 -53.389 -22.497 -10.788 1.343 0.679 H7 6H3 40
6H3 H9 H9 H 0 1 N N N N N N -20.503 -49.945 -22.239 -8.506 1.264 -1.356 H9 6H3 41
6H3 H10 H10 H 0 1 N N N N N N -21.759 -50.469 -21.067 -8.607 2.221 0.142 H10 6H3 42
6H3 H11 H11 H 0 1 N N N N N N -20.262 -48.734 -20.129 -6.243 1.829 -0.542 H11 6H3 43
6H3 H12 H12 H 0 1 N N N N N N -20.167 -50.282 -19.223 -6.608 1.071 1.027 H12 6H3 44
6H3 H13 H13 H 0 1 N N N N N N -18.667 -52.959 -21.673 -9.243 -1.912 0.312 H13 6H3 45
6H3 H14 H14 H 0 1 N N N N N N -18.698 -51.444 -22.639 -8.878 -1.154 -1.257 H14 6H3 46
6H3 H15 H15 H 0 1 N N N N N N -18.250 -51.737 -19.640 -6.980 -1.347 1.127 H15 6H3 47
6H3 H16 H16 H 0 1 N N N N N N -17.062 -51.215 -20.882 -6.879 -2.304 -0.371 H16 6H3 48
6H3 H17 H17 H 0 1 N N N N N N -19.317 -48.086 -18.430 -5.267 -2.298 0.650 H17 6H3 49
6H3 H18 H18 H 0 1 N N N N N N -15.548 -46.007 -16.284 -0.580 -1.991 -0.052 H18 6H3 50
6H3 H19 H19 H 0 1 N N N N N N -10.843 -50.633 -16.405 4.053 1.328 0.312 H19 6H3 51
6H3 H20 H20 H 0 1 N N N N N N -14.267 -50.881 -16.762 2.121 -1.590 1.036 H20 6H3 52
6H3 H21 H21 H 0 1 N N N N N N -15.528 -52.198 -18.420 2.997 -3.890 1.030 H21 6H3 53
6H3 H22 H22 H 0 1 N N N N N N -14.370 -53.109 -20.409 5.298 -4.334 0.285 H22 6H3 54
6H3 H23 H23 H 0 1 N N N N N N -11.961 -52.702 -20.722 6.737 -2.482 -0.460 H23 6H3 55
6H3 H24 H24 H 0 1 N N N N N N -9.984 -51.064 -20.059 5.660 0.867 -0.948 H24 6H3 56
6H3 H25 H25 H 0 1 N N N N N N -7.468 -52.160 -18.968 8.121 1.388 -1.866 H25 6H3 57
6H3 H26 H26 H 0 1 N N N N N N -7.307 -51.420 -17.339 8.006 2.011 -0.202 H26 6H3 58
6H3 H27 H27 H 0 1 N N N N N N -6.496 -49.881 -19.110 10.001 -0.079 -1.185 H27 6H3 59
6H3 H28 H28 H 0 1 N N N N N N -8.103 -49.950 -19.909 10.369 1.629 -0.848 H28 6H3 60
6H3 H29 H29 H 0 1 N N N N N N -7.941 -49.210 -18.280 9.886 0.544 0.478 H29 6H3 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6H3 C01 N02 SING N N 1
6H3 C05 N02 SING N N 2
6H3 C05 C06 SING N N 3
6H3 N02 C03 SING N N 4
6H3 C03 C04 SING N N 5
6H3 C06 N07 SING N N 6
6H3 N07 C04 SING N N 7
6H3 N07 C08 SING N N 8
6H3 C26 C25 DOUB Y N 9
6H3 C26 C27 SING Y N 10
6H3 C25 C24 SING Y N 11
6H3 C11 C08 DOUB Y N 12
6H3 C11 C12 SING Y N 13
6H3 C08 C09 SING Y N 14
6H3 N28 C27 SING N N 15
6H3 N28 C29 SING N N 16
6H3 C31 C30 SING N N 17
6H3 C27 C22 DOUB Y N 18
6H3 C12 C13 DOUB Y N 19
6H3 C24 C23 DOUB Y N 20
6H3 C09 C10 DOUB Y N 21
6H3 C30 C29 SING N N 22
6H3 C29 O32 DOUB N N 23
6H3 C22 C23 SING Y N 24
6H3 C22 N21 SING N N 25
6H3 C13 C10 SING Y N 26
6H3 C13 N14 SING N N 27
6H3 N21 C20 SING N N 28
6H3 N33 C20 DOUB Y N 29
6H3 N33 C15 SING Y N 30
6H3 N14 C15 SING N N 31
6H3 C20 C18 SING Y N 32
6H3 C15 N16 DOUB Y N 33
6H3 C18 C17 DOUB Y N 34
6H3 C18 CL19 SING N N 35
6H3 N16 C17 SING Y N 36
6H3 C12 H1 SING N N 37
6H3 C17 H2 SING N N 38
6H3 C11 H3 SING N N 39
6H3 C10 H4 SING N N 40
6H3 C01 H5 SING N N 41
6H3 C01 H6 SING N N 42
6H3 C01 H7 SING N N 43
6H3 C03 H9 SING N N 44
6H3 C03 H10 SING N N 45
6H3 C04 H11 SING N N 46
6H3 C04 H12 SING N N 47
6H3 C05 H13 SING N N 48
6H3 C05 H14 SING N N 49
6H3 C06 H15 SING N N 50
6H3 C06 H16 SING N N 51
6H3 C09 H17 SING N N 52
6H3 N14 H18 SING N N 53
6H3 N21 H19 SING N N 54
6H3 C23 H20 SING N N 55
6H3 C24 H21 SING N N 56
6H3 C25 H22 SING N N 57
6H3 C26 H23 SING N N 58
6H3 N28 H24 SING N N 59
6H3 C30 H25 SING N N 60
6H3 C30 H26 SING N N 61
6H3 C31 H27 SING N N 62
6H3 C31 H28 SING N N 63
6H3 C31 H29 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6H3 SMILES ACDLabs 12.01 c3(cnc(Nc1ccc(cc1)N2CCN(C)CC2)nc3Nc4ccccc4NC(=O)CC)Cl
6H3 InChI InChI 1.03 InChI=1S/C24H28ClN7O/c1-3-22(33)28-20-6-4-5-7-21(20)29-23-19(25)16-26-24(30-23)27-17-8-10-18(11-9-17)32-14-12-31(2)13-15-32/h4-11,16H,3,12-15H2,1-2H3,(H,28,33)(H2,26,27,29,30)
6H3 InChIKey InChI 1.03 IIMJCIGRKJCCHT-UHFFFAOYSA-N
6H3 SMILES_CANONICAL CACTVS 3.385 CCC(=O)Nc1ccccc1Nc2nc(Nc3ccc(cc3)N4CCN(C)CC4)ncc2Cl
6H3 SMILES CACTVS 3.385 CCC(=O)Nc1ccccc1Nc2nc(Nc3ccc(cc3)N4CCN(C)CC4)ncc2Cl
6H3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 CCC(=O)Nc1ccccc1Nc2c(cnc(n2)Nc3ccc(cc3)N4CCN(CC4)C)Cl
6H3 SMILES "OpenEye OEToolkits" 2.0.4 CCC(=O)Nc1ccccc1Nc2c(cnc(n2)Nc3ccc(cc3)N4CCN(CC4)C)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6H3 "SYSTEMATIC NAME" ACDLabs 12.01 N-{2-[(5-chloro-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]phenyl}propanamide
6H3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 ~{N}-[2-[[5-chloranyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6H3 'Create component' 2016-04-08 RCSB
6H3 'Initial release' 2017-02-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6H3 C18 C 10.794 1.875 1
6H3 C13 C 15.990 0.375 2
6H3 C12 C 15.990 1.875 3
6H3 C17 C 12.093 2.625 4
6H3 C15 C 13.392 0.375 5
6H3 C11 C 17.290 2.625 6
6H3 C10 C 17.290 -0.375 7
6H3 C22 C 9.495 -1.875 8
6H3 C20 C 10.794 0.375 9
6H3 C01 C 23.785 4.875 10
6H3 N02 N 22.486 4.125 11
6H3 C03 C 22.486 2.625 12
6H3 C04 C 21.187 1.875 13
6H3 C05 C 21.187 4.875 14
6H3 C06 C 19.887 4.125 15
6H3 N07 N 19.887 2.625 16
6H3 C08 C 18.588 1.875 17
6H3 C09 C 18.588 0.375 18
6H3 N14 N 14.691 -0.375 19
6H3 N16 N 13.392 1.875 20
6H3 CL19 Cl 9.495 2.625 21
6H3 N21 N 9.495 -0.375 22
6H3 C23 C 10.794 -2.625 23
6H3 C24 C 10.794 -4.125 24
6H3 C25 C 9.495 -4.875 25
6H3 C26 C 8.196 -4.125 26
6H3 C27 C 8.196 -2.625 27
6H3 N28 N 6.897 -1.875 28
6H3 C29 C 5.598 -2.625 29
6H3 C30 C 4.299 -1.875 30
6H3 C31 C 3.000 -2.625 31
6H3 O32 O 5.598 -4.125 32
6H3 N33 N 12.093 -0.375 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6H3 C01 N02 SINGLE NONE 1
6H3 C05 N02 SINGLE NONE 2
6H3 C05 C06 SINGLE NONE 3
6H3 N02 C03 SINGLE NONE 4
6H3 C03 C04 SINGLE NONE 5
6H3 C06 N07 SINGLE NONE 6
6H3 N07 C04 SINGLE NONE 7
6H3 N07 C08 SINGLE NONE 8
6H3 C26 C25 DOUBLE NONE 9
6H3 C26 C27 SINGLE NONE 10
6H3 C25 C24 SINGLE NONE 11
6H3 C11 C08 SINGLE NONE 12
6H3 C11 C12 DOUBLE NONE 13
6H3 C08 C09 DOUBLE NONE 14
6H3 N28 C27 SINGLE NONE 15
6H3 N28 C29 SINGLE NONE 16
6H3 C31 C30 SINGLE NONE 17
6H3 C27 C22 DOUBLE NONE 18
6H3 C12 C13 SINGLE NONE 19
6H3 C24 C23 DOUBLE NONE 20
6H3 C09 C10 SINGLE NONE 21
6H3 C30 C29 SINGLE NONE 22
6H3 C29 O32 DOUBLE NONE 23
6H3 C22 C23 SINGLE NONE 24
6H3 C22 N21 SINGLE NONE 25
6H3 C13 C10 DOUBLE NONE 26
6H3 C13 N14 SINGLE NONE 27
6H3 N21 C20 SINGLE NONE 28
6H3 N33 C20 SINGLE NONE 29
6H3 N33 C15 DOUBLE NONE 30
6H3 N14 C15 SINGLE NONE 31
6H3 C20 C18 DOUBLE NONE 32
6H3 C15 N16 SINGLE NONE 33
6H3 C18 C17 SINGLE NONE 34
6H3 C18 CL19 SINGLE NONE 35
6H3 N16 C17 DOUBLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6H3 MurckoScaffold S1 scaffold c1ccc(Nc2ccnc(Nc3ccc(N4CCNCC4)cc3)n2)cc1 InChI=1S/C20H22N6/c1-2-4-16(5-3-1)23-19-10-11-22-20(25-19)24-17-6-8-18(9-7-17)26-14-12-21-13-15-26/h1-11,21H,12-15H2,(H2,22,23,24,25) BEWQMTFDSZQTFR-UHFFFAOYSA-N
6H3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6H3 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
6H3 piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
6H3 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
6H3 Z54628578 F5 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6H3 C18 S1 1
6H3 C13 S1 1
6H3 C12 S1 1
6H3 C17 S1 1
6H3 C15 S1 1
6H3 C11 S1 1
6H3 C10 S1 1
6H3 C22 S1 1
6H3 C20 S1 1
6H3 N02 S1 1
6H3 C03 S1 1
6H3 C04 S1 1
6H3 C05 S1 1
6H3 C06 S1 1
6H3 N07 S1 1
6H3 C08 S1 1
6H3 C09 S1 1
6H3 N14 S1 1
6H3 N16 S1 1
6H3 N21 S1 1
6H3 C23 S1 1
6H3 C24 S1 1
6H3 C25 S1 1
6H3 C26 S1 1
6H3 C27 S1 1
6H3 N33 S1 1
6H3 N28 F1 1
6H3 C29 F1 1
6H3 O32 F1 1
6H3 C30 F1 1
6H3 C13 F2 1
6H3 C12 F2 1
6H3 C11 F2 1
6H3 C08 F2 1
6H3 C09 F2 1
6H3 C10 F2 1
6H3 C22 F2 2
6H3 C27 F2 2
6H3 C26 F2 2
6H3 C25 F2 2
6H3 C24 F2 2
6H3 C23 F2 2
6H3 N02 F3 1
6H3 C05 F3 1
6H3 C06 F3 1
6H3 N07 F3 1
6H3 C04 F3 1
6H3 C03 F3 1
6H3 C18 F4 1
6H3 C20 F4 1
6H3 N33 F4 1
6H3 C15 F4 1
6H3 N16 F4 1
6H3 C17 F4 1
6H3 C13 F5 1
6H3 N14 F5 1
6H3 C15 F5 1
6H3 N33 F5 1
6H3 C20 F5 1
6H3 C18 F5 1
6H3 C17 F5 1
6H3 N16 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6H3
_pdbe_chem_comp_rdkit_properties.exactmw 465.204
_pdbe_chem_comp_rdkit_properties.amw 465.989
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.292
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 238.046
_pdbe_chem_comp_rdkit_properties.tpsa 85.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.434
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.178
_pdbe_chem_comp_rdkit_properties.chi0v 16.673
_pdbe_chem_comp_rdkit_properties.chi1v 8.849
_pdbe_chem_comp_rdkit_properties.chi2v 3.678
_pdbe_chem_comp_rdkit_properties.chi3v 3.678
_pdbe_chem_comp_rdkit_properties.chi4v 2.200
_pdbe_chem_comp_rdkit_properties.chi0n 43.917
_pdbe_chem_comp_rdkit_properties.chi1n 22.312
_pdbe_chem_comp_rdkit_properties.chi2n 3.424
_pdbe_chem_comp_rdkit_properties.chi3n 3.424
_pdbe_chem_comp_rdkit_properties.chi4n 2.073
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.360
_pdbe_chem_comp_rdkit_properties.kappa1 6.612
_pdbe_chem_comp_rdkit_properties.kappa2 10.504
_pdbe_chem_comp_rdkit_properties.kappa3 5.911
_pdbe_chem_comp_rdkit_properties.Phi 2.105
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6H3 UniChem ChEMBL CHEMBL3884293
6H3 UniChem PDBe 6H3
6H3 UniChem ZINC ZINC000584904719
6H3 UniChem PubChem 134130572
6H3 UniChem BindingDb 50209754
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6H3 C18 -2.209 2.734 -0.617 ETKDGv3 1
6H3 C13 1.506 -0.683 0.478 ETKDGv3 2
6H3 C12 2.295 0.010 -0.573 ETKDGv3 3
6H3 C17 -0.758 2.849 -0.379 ETKDGv3 4
6H3 C15 -0.690 0.512 0.082 ETKDGv3 5
6H3 C11 3.631 -0.060 -0.573 ETKDGv3 6
6H3 C10 2.151 -1.418 1.399 ETKDGv3 7
6H3 C22 -4.797 0.067 -0.954 ETKDGv3 8
6H3 C20 -2.786 1.524 -0.488 ETKDGv3 9
6H3 C01 9.289 -0.906 1.320 ETKDGv3 10
6H3 N02 8.601 -1.026 0.023 ETKDGv3 11
6H3 C03 7.770 -2.245 -0.067 ETKDGv3 12
6H3 C04 6.483 -2.148 0.764 ETKDGv3 13
6H3 C05 7.840 0.190 -0.332 ETKDGv3 14
6H3 C06 6.558 0.348 0.496 ETKDGv3 15
6H3 N07 5.783 -0.895 0.466 ETKDGv3 16
6H3 C08 4.343 -0.838 0.470 ETKDGv3 17
6H3 C09 3.626 -1.491 1.403 ETKDGv3 18
6H3 N14 0.070 -0.635 0.484 ETKDGv3 19
6H3 N16 -0.065 1.800 -0.051 ETKDGv3 20
6H3 CL19 -3.109 4.172 -1.085 ETKDGv3 21
6H3 N21 -4.202 1.349 -0.675 ETKDGv3 22
6H3 C23 -4.079 -0.918 -1.807 ETKDGv3 23
6H3 C24 -4.599 -2.129 -2.033 ETKDGv3 24
6H3 C25 -5.897 -2.498 -1.441 ETKDGv3 25
6H3 C26 -6.567 -1.613 -0.695 ETKDGv3 26
6H3 C27 -6.013 -0.261 -0.456 ETKDGv3 27
6H3 N28 -6.760 0.650 0.360 ETKDGv3 28
6H3 C29 -7.455 1.772 -0.201 ETKDGv3 29
6H3 C30 -8.311 2.638 0.672 ETKDGv3 30
6H3 C31 -9.706 2.041 0.816 ETKDGv3 31
6H3 O32 -7.387 2.011 -1.437 ETKDGv3 32
6H3 N33 -1.972 0.398 -0.110 ETKDGv3 33
6H3 H1 1.795 0.547 -1.368 ETKDGv3 34
6H3 H2 -0.265 3.807 -0.476 ETKDGv3 35
6H3 H3 4.191 0.431 -1.358 ETKDGv3 36
6H3 H4 1.596 -1.950 2.162 ETKDGv3 37
6H3 H5 9.964 -0.023 1.312 ETKDGv3 38
6H3 H6 8.574 -0.801 2.161 ETKDGv3 39
6H3 H7 9.923 -1.801 1.498 ETKDGv3 40
6H3 H9 8.353 -3.136 0.255 ETKDGv3 41
6H3 H10 7.496 -2.413 -1.131 ETKDGv3 42
6H3 H11 5.839 -3.019 0.512 ETKDGv3 43
6H3 H12 6.716 -2.196 1.848 ETKDGv3 44
6H3 H13 7.566 0.140 -1.408 ETKDGv3 45
6H3 H14 8.476 1.094 -0.208 ETKDGv3 46
6H3 H15 6.807 0.601 1.548 ETKDGv3 47
6H3 H16 5.971 1.196 0.084 ETKDGv3 48
6H3 H17 4.118 -2.062 2.180 ETKDGv3 49
6H3 H18 -0.454 -1.458 0.862 ETKDGv3 50
6H3 H19 -4.826 2.171 -0.525 ETKDGv3 51
6H3 H20 -3.135 -0.655 -2.268 ETKDGv3 52
6H3 H21 -4.071 -2.839 -2.656 ETKDGv3 53
6H3 H22 -6.309 -3.483 -1.617 ETKDGv3 54
6H3 H23 -7.524 -1.886 -0.267 ETKDGv3 55
6H3 H24 -6.986 0.359 1.337 ETKDGv3 56
6H3 H25 -7.843 2.733 1.676 ETKDGv3 57
6H3 H26 -8.389 3.656 0.232 ETKDGv3 58
6H3 H27 -10.325 2.696 1.465 ETKDGv3 59
6H3 H28 -10.195 1.960 -0.178 ETKDGv3 60
6H3 H29 -9.649 1.033 1.280 ETKDGv3 61
#