data_6PH
#
_chem_comp.id 6PH
_chem_comp.name "(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H61 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PHOSPHATIDIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-04-30
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 592.785
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6PH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CX5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6PH P P P 0 1 N N N N N N -2.748 6.310 40.075 -1.808 -3.778 2.042 P 6PH 1
6PH O11 O11 O 0 1 N N N N N N -2.119 4.933 40.361 -1.322 -3.169 0.633 O11 6PH 2
6PH O12 O12 O 0 1 N N N N N N -3.978 6.308 39.150 -0.628 -4.202 2.829 O12 6PH 3
6PH O13 O13 O 0 1 N N N N N N -3.183 7.122 41.349 -2.623 -2.656 2.859 O13 6PH 4
6PH O14 O14 O 0 1 N N N N N N -1.605 6.965 39.331 -2.761 -5.048 1.777 O14 6PH 5
6PH C1 C1 C 0 1 N N N N N N -1.081 4.496 41.305 -0.484 -3.885 -0.277 C1 6PH 6
6PH C2 C2 C 0 1 N N R N N N -0.707 2.964 41.238 -0.215 -3.021 -1.511 C2 6PH 7
6PH C3 C3 C 0 1 N N N N N N -1.962 2.343 40.515 -1.546 -2.580 -2.124 C3 6PH 8
6PH O31 O31 O 0 1 N N N N N N -1.752 0.949 40.392 -2.347 -1.913 -1.114 O31 6PH 9
6PH O32 O32 O 0 1 N N N N N N -3.771 0.689 39.361 -3.927 -1.619 -2.631 O32 6PH 10
6PH C31 C31 C 0 1 N N N N N N -2.761 0.247 39.784 -3.553 -1.462 -1.493 C31 6PH 11
6PH C32 C32 C 0 1 N N N N N N -2.469 -1.270 39.680 -4.442 -0.760 -0.498 C32 6PH 12
6PH C33 C33 C 0 1 N N N N N N -1.922 -1.750 38.322 -5.748 -0.350 -1.182 C33 6PH 13
6PH C34 C34 C 0 1 N N N N N N -1.582 -3.251 38.338 -6.650 0.363 -0.172 C34 6PH 14
6PH C35 C35 C 0 1 N N N N N N -0.073 -3.519 38.464 -7.956 0.772 -0.855 C35 6PH 15
6PH C36 C36 C 0 1 N N N N N N 0.250 -4.873 37.844 -8.858 1.485 0.154 C36 6PH 16
6PH C37 C37 C 0 1 N N N N N N 1.352 -5.616 38.607 -10.164 1.894 -0.529 C37 6PH 17
6PH C38 C38 C 0 1 N N N N N N 2.363 -6.046 37.574 -11.066 2.607 0.481 C38 6PH 18
6PH C39 C39 C 0 1 N N N N N N 2.648 -7.542 37.589 -12.373 3.017 -0.203 C39 6PH 19
6PH C3A C3A C 0 1 N N N N N N 4.101 -7.707 38.051 -13.274 3.730 0.807 C3A 6PH 20
6PH C3B C3B C 0 1 N N N N N N 5.101 -7.847 36.886 -14.581 4.139 0.124 C3B 6PH 21
6PH C3C C3C C 0 1 N N N N N N 6.555 -7.796 37.393 -15.483 4.852 1.133 C3C 6PH 22
6PH C3D C3D C 0 1 N N N N N N 6.996 -9.184 37.894 -16.789 5.262 0.450 C3D 6PH 23
6PH O21 O21 O 0 1 N N N N N N 0.412 2.713 40.340 0.551 -1.850 -1.124 O21 6PH 24
6PH O22 O22 O 0 1 N N N N N N 1.953 1.667 41.653 2.402 -2.996 -1.503 O22 6PH 25
6PH C21 C21 C 0 1 N N N N N N 1.363 1.763 40.640 1.888 -1.957 -1.160 C21 6PH 26
6PH C22 C22 C 0 1 N N N N N N 1.607 0.805 39.507 2.749 -0.783 -0.771 C22 6PH 27
6PH C23 C23 C 0 1 N N N N N N 2.665 -0.231 39.872 4.225 -1.168 -0.899 C23 6PH 28
6PH C24 C24 C 0 1 N N N N N N 3.157 -1.007 38.666 5.099 0.024 -0.505 C24 6PH 29
6PH C25 C25 C 0 1 N N N N N N 4.496 -1.679 39.010 6.574 -0.361 -0.632 C25 6PH 30
6PH C26 C26 C 0 1 N N N N N N 4.897 -2.574 37.799 7.448 0.831 -0.238 C26 6PH 31
6PH C27 C27 C 0 1 N N N N N N 6.419 -2.820 37.786 8.924 0.446 -0.366 C27 6PH 32
6PH C28 C28 C 0 1 N N N N N N 6.910 -3.004 36.335 9.798 1.638 0.028 C28 6PH 33
6PH C29 C29 C 0 1 N N N N N N 8.444 -2.786 36.151 11.273 1.253 -0.100 C29 6PH 34
6PH C2A C2A C 0 1 N N N N N N 9.086 -3.718 35.212 12.147 2.445 0.295 C2A 6PH 35
6PH C2B C2B C 0 1 N N N N N N 10.419 -4.319 35.539 13.623 2.060 0.167 C2B 6PH 36
6PH C2C C2C C 0 1 N N N N N N 10.430 -5.610 36.236 14.497 3.253 0.561 C2C 6PH 37
6PH C2D C2D C 0 1 N N N N N N 11.680 -6.309 36.570 15.972 2.868 0.433 C2D 6PH 38
6PH C2E C2E C 0 1 N N N N N N 12.469 -5.772 37.687 16.846 4.060 0.827 C2E 6PH 39
6PH C2F C2F C 0 1 N N N N N N 13.149 -6.682 38.598 18.321 3.675 0.700 C2F 6PH 40
6PH HO13 HO13 H 0 0 N N N N N N -3.271 6.531 42.087 -2.947 -2.954 3.720 HO13 6PH 41
6PH HO14 HO14 H 0 0 N N N N N N -1.854 7.102 38.425 -3.556 -4.844 1.266 HO14 6PH 42
6PH H1 H1 H 0 1 N N N N N N -0.169 5.070 41.084 0.461 -4.126 0.211 H1 6PH 43
6PH H1A H1A H 0 1 N N N N N N -1.490 4.668 42.312 -0.981 -4.807 -0.581 H1A 6PH 44
6PH H2 H2 H 0 1 N N N N N N -0.451 2.574 42.234 0.349 -3.598 -2.243 H2 6PH 45
6PH H3 H3 H 0 1 N N N N N N -2.869 2.535 41.107 -1.355 -1.893 -2.949 H3 6PH 46
6PH H3A H3A H 0 1 N N N N N N -2.093 2.798 39.522 -2.082 -3.454 -2.496 H3A 6PH 47
6PH H32 H32 H 0 1 N N N N N N -1.717 -1.515 40.445 -4.661 -1.432 0.331 H32 6PH 48
6PH H32A H32A H 0 0 N N N N N N -3.436 -1.777 39.816 -3.934 0.128 -0.122 H32A 6PH 49
6PH H33 H33 H 0 1 N N N N N N -2.686 -1.570 37.551 -5.529 0.322 -2.011 H33 6PH 50
6PH H33A H33A H 0 0 N N N N N N -0.998 -1.192 38.109 -6.255 -1.239 -1.558 H33A 6PH 51
6PH H34 H34 H 0 1 N N N N N N -2.089 -3.712 39.198 -6.869 -0.310 0.658 H34 6PH 52
6PH H34A H34A H 0 0 N N N N N N -1.917 -3.679 37.382 -6.143 1.251 0.204 H34A 6PH 53
6PH H35 H35 H 0 1 N N N N N N 0.486 -2.731 37.938 -7.737 1.444 -1.685 H35 6PH 54
6PH H35A H35A H 0 0 N N N N N N 0.214 -3.522 39.526 -8.463 -0.116 -1.232 H35A 6PH 55
6PH H36 H36 H 0 1 N N N N N N -0.661 -5.490 37.858 -9.077 0.813 0.984 H36 6PH 56
6PH H36A H36A H 0 0 N N N N N N 0.609 -4.698 36.819 -8.351 2.373 0.531 H36A 6PH 57
6PH H37 H37 H 0 1 N N N N N N 1.818 -4.956 39.353 -9.945 2.567 -1.359 H37 6PH 58
6PH H37A H37A H 0 0 N N N N N N 0.946 -6.481 39.153 -10.672 1.006 -0.905 H37A 6PH 59
6PH H38 H38 H 0 1 N N N N N N 1.971 -5.782 36.581 -11.285 1.935 1.310 H38 6PH 60
6PH H38A H38A H 0 0 N N N N N N 3.307 -5.532 37.808 -10.559 3.496 0.857 H38A 6PH 61
6PH H39 H39 H 0 1 N N N N N N 1.964 -8.056 38.281 -12.153 3.689 -1.032 H39 6PH 62
6PH H39A H39A H 0 0 N N N N N N 2.498 -7.983 36.593 -12.880 2.128 -0.579 H39A 6PH 63
6PH H3AA H3AA H 0 0 N N N N N N 4.378 -6.818 38.637 -13.493 3.058 1.637 H3AA 6PH 64
6PH H3AB H3AB H 0 0 N N N N N N 4.154 -8.634 38.641 -12.767 4.618 1.183 H3AB 6PH 65
6PH H3B H3B H 0 1 N N N N N N 4.932 -8.811 36.385 -14.362 4.811 -0.706 H3B 6PH 66
6PH H3BA H3BA H 0 0 N N N N N N 4.944 -7.011 36.188 -15.088 3.251 -0.252 H3BA 6PH 67
6PH H3C H3C H 0 1 N N N N N N 7.214 -7.483 36.570 -15.702 4.180 1.963 H3C 6PH 68
6PH H3CA H3CA H 0 0 N N N N N N 6.619 -7.078 38.224 -14.975 5.741 1.510 H3CA 6PH 69
6PH H3D H3D H 0 1 N N N N N N 7.101 -9.867 37.038 -17.431 5.770 1.169 H3D 6PH 70
6PH H3DA H3DA H 0 0 N N N N N N 7.962 -9.096 38.414 -16.570 5.934 -0.380 H3DA 6PH 71
6PH H3DB H3DB H 0 0 N N N N N N 6.240 -9.580 38.588 -17.296 4.373 0.074 H3DB 6PH 72
6PH H22 H22 H 0 1 N N N N N N 0.666 0.285 39.273 2.535 0.058 -1.430 H22 6PH 73
6PH H22A H22A H 0 0 N N N N N N 1.967 1.378 38.640 2.536 -0.501 0.259 H22A 6PH 74
6PH H23 H23 H 0 1 N N N N N N 3.522 0.290 40.325 4.439 -2.010 -0.240 H23 6PH 75
6PH H23A H23A H 0 0 N N N N N N 2.207 -0.948 40.569 4.439 -1.451 -1.930 H23A 6PH 76
6PH H24 H24 H 0 1 N N N N N N 2.418 -1.775 38.396 4.885 0.865 -1.164 H24 6PH 77
6PH H24A H24A H 0 0 N N N N N N 3.295 -0.322 37.817 4.885 0.306 0.526 H24A 6PH 78
6PH H25 H25 H 0 1 N N N N N N 5.268 -0.916 39.188 6.788 -1.202 0.027 H25 6PH 79
6PH H25A H25A H 0 0 N N N N N N 4.400 -2.285 39.923 6.788 -0.643 -1.663 H25A 6PH 80
6PH H26 H26 H 0 1 N N N N N N 4.377 -3.540 37.878 7.234 1.673 -0.897 H26 6PH 81
6PH H26A H26A H 0 0 N N N N N N 4.612 -2.061 36.869 7.234 1.114 0.793 H26A 6PH 82
6PH H27 H27 H 0 1 N N N N N N 6.931 -1.957 38.237 9.138 -0.395 0.293 H27 6PH 83
6PH H27A H27A H 0 0 N N N N N N 6.643 -3.730 38.362 9.137 0.164 -1.397 H27A 6PH 84
6PH H28 H28 H 0 1 N N N N N N 6.673 -4.032 36.024 9.583 2.480 -0.631 H28 6PH 85
6PH H28A H28A H 0 0 N N N N N N 6.403 -2.242 35.726 9.584 1.921 1.059 H28A 6PH 86
6PH H29 H29 H 0 1 N N N N N N 8.595 -1.766 35.768 11.487 0.412 0.560 H29 6PH 87
6PH H29A H29A H 0 0 N N N N N N 8.907 -2.960 37.134 11.487 0.971 -1.130 H29A 6PH 88
6PH H2A H2A H 0 1 N N N N N N 8.391 -4.563 35.100 11.933 3.287 -0.364 H2A 6PH 89
6PH H2AA H2AA H 0 0 N N N N N N 9.295 -3.093 34.331 11.933 2.728 1.325 H2AA 6PH 90
6PH H2B H2B H 0 1 N N N N N N 10.945 -4.468 34.584 13.837 1.219 0.826 H2B 6PH 91
6PH H2C H2C H 0 1 N N N N N N 9.930 -5.427 37.199 14.282 4.094 -0.098 H2C 6PH 92
6PH H2D H2D H 0 1 N N N N N N 11.410 -7.342 36.834 16.186 2.026 1.092 H2D 6PH 93
6PH H2DA H2DA H 0 0 N N N N N N 12.320 -6.196 35.683 16.186 2.585 -0.597 H2DA 6PH 94
6PH H2E H2E H 0 1 N N N N N N 13.254 -5.148 37.235 16.632 4.901 0.168 H2E 6PH 95
6PH H2F H2F H 0 1 N N N N N N 13.320 -7.645 38.095 18.536 2.833 1.359 H2F 6PH 96
6PH H2FA H2FA H 0 0 N N N N N N 14.114 -6.248 38.897 18.535 3.392 -0.331 H2FA 6PH 97
6PH H58 H58 H 0 1 N N N N N N 10.884 -3.613 36.242 13.836 1.778 -0.864 H58 6PH 98
6PH H59 H59 H 0 1 N N N N N N 9.972 -6.283 35.496 14.283 3.535 1.592 H59 6PH 99
6PH H60 H60 H 0 1 N N N N N N 11.719 -5.279 38.323 16.632 4.342 1.858 H60 6PH 100
6PH H61 H61 H 0 1 N N N N N N 12.526 -6.841 39.490 18.944 4.524 0.981 H61 6PH 101
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6PH P O11 SING N N 1
6PH P O13 SING N N 2
6PH O11 C1 SING N N 3
6PH O12 P DOUB N N 4
6PH O13 HO13 SING N N 5
6PH O14 P SING N N 6
6PH O14 HO14 SING N N 7
6PH C1 H1 SING N N 8
6PH C1 H1A SING N N 9
6PH C2 C1 SING N N 10
6PH C2 H2 SING N N 11
6PH C3 C2 SING N N 12
6PH C3 H3 SING N N 13
6PH C3 H3A SING N N 14
6PH O31 C3 SING N N 15
6PH O32 C31 DOUB N N 16
6PH C31 O31 SING N N 17
6PH C32 C31 SING N N 18
6PH C32 H32 SING N N 19
6PH C32 H32A SING N N 20
6PH C33 C32 SING N N 21
6PH C33 C34 SING N N 22
6PH C33 H33 SING N N 23
6PH C33 H33A SING N N 24
6PH C34 C35 SING N N 25
6PH C34 H34 SING N N 26
6PH C34 H34A SING N N 27
6PH C35 H35 SING N N 28
6PH C35 H35A SING N N 29
6PH C36 C35 SING N N 30
6PH C36 C37 SING N N 31
6PH C36 H36 SING N N 32
6PH C36 H36A SING N N 33
6PH C37 H37 SING N N 34
6PH C37 H37A SING N N 35
6PH C38 C37 SING N N 36
6PH C38 C39 SING N N 37
6PH C38 H38 SING N N 38
6PH C38 H38A SING N N 39
6PH C39 C3A SING N N 40
6PH C39 H39 SING N N 41
6PH C39 H39A SING N N 42
6PH C3A H3AA SING N N 43
6PH C3A H3AB SING N N 44
6PH C3B C3A SING N N 45
6PH C3B C3C SING N N 46
6PH C3B H3B SING N N 47
6PH C3B H3BA SING N N 48
6PH C3C C3D SING N N 49
6PH C3C H3C SING N N 50
6PH C3C H3CA SING N N 51
6PH C3D H3D SING N N 52
6PH C3D H3DA SING N N 53
6PH C3D H3DB SING N N 54
6PH O21 C2 SING N N 55
6PH O21 C21 SING N N 56
6PH C21 O22 DOUB N N 57
6PH C22 C21 SING N N 58
6PH C22 C23 SING N N 59
6PH C22 H22 SING N N 60
6PH C22 H22A SING N N 61
6PH C23 H23 SING N N 62
6PH C23 H23A SING N N 63
6PH C24 C23 SING N N 64
6PH C24 C25 SING N N 65
6PH C24 H24 SING N N 66
6PH C24 H24A SING N N 67
6PH C25 H25 SING N N 68
6PH C25 H25A SING N N 69
6PH C26 C25 SING N N 70
6PH C26 H26 SING N N 71
6PH C26 H26A SING N N 72
6PH C27 C26 SING N N 73
6PH C27 H27 SING N N 74
6PH C27 H27A SING N N 75
6PH C28 C27 SING N N 76
6PH C28 H28 SING N N 77
6PH C28 H28A SING N N 78
6PH C29 C28 SING N N 79
6PH C29 H29 SING N N 80
6PH C29 H29A SING N N 81
6PH C2A C29 SING N N 82
6PH C2A C2B SING N N 83
6PH C2A H2A SING N N 84
6PH C2A H2AA SING N N 85
6PH C2B C2C SING N N 86
6PH C2B H2B SING N N 87
6PH C2C C2D SING N N 88
6PH C2C H2C SING N N 89
6PH C2D C2E SING N N 90
6PH C2D H2D SING N N 91
6PH C2D H2DA SING N N 92
6PH C2E C2F SING N N 93
6PH C2E H2E SING N N 94
6PH C2F H2F SING N N 95
6PH C2F H2FA SING N N 96
6PH C2B H58 SING N N 97
6PH C2C H59 SING N N 98
6PH C2E H60 SING N N 99
6PH C2F H61 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6PH SMILES ACDLabs 10.04 O=P(O)(OCC(OC(=O)CCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCC)O
6PH SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCC)CO[P](O)(O)=O
6PH SMILES CACTVS 3.341 CCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCCCC)CO[P](O)(O)=O
6PH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCC)COP(=O)(O)O
6PH SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCCCC)COP(=O)(O)O
6PH InChI InChI 1.03 InChI=1S/C31H61O8P/c1-3-5-7-9-11-13-15-16-18-20-22-24-26-31(33)39-29(28-38-40(34,35)36)27-37-30(32)25-23-21-19-17-14-12-10-8-6-4-2/h29H,3-28H2,1-2H3,(H2,34,35,36)/t29-/m1/s1
6PH InChIKey InChI 1.03 UOOPRMYYAWVCCZ-GDLZYMKVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6PH "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate"
6PH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-phosphonooxy-3-tridecanoyloxy-propan-2-yl] pentadecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6PH 'Create component' 2008-04-30 RCSB
6PH 'Modify descriptor' 2011-06-04 RCSB
6PH 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 6PH
_pdbx_chem_comp_synonyms.name "PHOSPHATIDIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 6PH
_pdbe_chem_comp_synonyms.name 'PHOSPHATIDIC ACID'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6PH P P 8.196 8.351 1
6PH O11 O 9.495 7.601 2
6PH O12 O 7.446 7.051 3
6PH O13 O 6.897 9.101 4
6PH O14 O 8.946 9.649 5
6PH C1 C 10.794 8.351 6
6PH C2 C 12.093 7.601 7
6PH C3 C 12.093 6.101 8
6PH O31 O 10.794 5.351 9
6PH O32 O 12.093 3.100 10
6PH C31 C 10.794 3.850 11
6PH C32 C 9.495 3.100 12
6PH C33 C 9.495 1.601 13
6PH C34 C 8.196 0.851 14
6PH C35 C 8.196 -0.649 15
6PH C36 C 6.897 -1.399 16
6PH C37 C 6.897 -2.900 17
6PH C38 C 5.598 -3.650 18
6PH C39 C 5.598 -5.149 19
6PH C3A C 4.299 -5.899 20
6PH C3B C 4.299 -7.399 21
6PH C3C C 3.000 -8.149 22
6PH C3D C 3.000 -9.649 23
6PH O21 O 13.392 8.351 24
6PH O22 O 14.691 6.101 25
6PH C21 C 14.691 7.601 26
6PH C22 C 15.990 8.351 27
6PH C23 C 17.290 7.601 28
6PH C24 C 18.588 8.351 29
6PH C25 C 19.887 7.601 30
6PH C26 C 21.187 8.351 31
6PH C27 C 22.486 7.601 32
6PH C28 C 23.785 8.351 33
6PH C29 C 25.084 7.601 34
6PH C2A C 26.383 8.351 35
6PH C2B C 27.682 7.601 36
6PH C2C C 28.981 8.351 37
6PH C2D C 30.280 7.601 38
6PH C2E C 31.579 8.351 39
6PH C2F C 32.878 7.601 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6PH P O11 SINGLE NONE 1
6PH P O13 SINGLE NONE 2
6PH O11 C1 SINGLE NONE 3
6PH O12 P DOUBLE NONE 4
6PH O14 P SINGLE NONE 5
6PH C2 C1 SINGLE BEGINDASH 6
6PH C3 C2 SINGLE NONE 7
6PH O31 C3 SINGLE NONE 8
6PH O32 C31 DOUBLE NONE 9
6PH C31 O31 SINGLE NONE 10
6PH C32 C31 SINGLE NONE 11
6PH C33 C32 SINGLE NONE 12
6PH C33 C34 SINGLE NONE 13
6PH C34 C35 SINGLE NONE 14
6PH C36 C35 SINGLE NONE 15
6PH C36 C37 SINGLE NONE 16
6PH C38 C37 SINGLE NONE 17
6PH C38 C39 SINGLE NONE 18
6PH C39 C3A SINGLE NONE 19
6PH C3B C3A SINGLE NONE 20
6PH C3B C3C SINGLE NONE 21
6PH C3C C3D SINGLE NONE 22
6PH O21 C2 SINGLE NONE 23
6PH O21 C21 SINGLE NONE 24
6PH C21 O22 DOUBLE NONE 25
6PH C22 C21 SINGLE NONE 26
6PH C22 C23 SINGLE NONE 27
6PH C24 C23 SINGLE NONE 28
6PH C24 C25 SINGLE NONE 29
6PH C26 C25 SINGLE NONE 30
6PH C27 C26 SINGLE NONE 31
6PH C28 C27 SINGLE NONE 32
6PH C29 C28 SINGLE NONE 33
6PH C2A C29 SINGLE NONE 34
6PH C2A C2B SINGLE NONE 35
6PH C2B C2C SINGLE NONE 36
6PH C2C C2D SINGLE NONE 37
6PH C2D C2E SINGLE NONE 38
6PH C2E C2F SINGLE NONE 39
#
_pdbe_chem_comp_substructure.comp_id 6PH
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6PH O11 F1 1
6PH P F1 1
6PH O12 F1 1
6PH O13 F1 1
6PH O14 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6PH
_pdbe_chem_comp_rdkit_properties.exactmw 592.410
_pdbe_chem_comp_rdkit_properties.amw 592.795
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 34
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 101
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.935
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 330.366
_pdbe_chem_comp_rdkit_properties.tpsa 119.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 8.953
_pdbe_chem_comp_rdkit_properties.CrippenMR 160.991
_pdbe_chem_comp_rdkit_properties.chi0v 20.108
_pdbe_chem_comp_rdkit_properties.chi1v 10.620
_pdbe_chem_comp_rdkit_properties.chi2v 2.575
_pdbe_chem_comp_rdkit_properties.chi3v 2.575
_pdbe_chem_comp_rdkit_properties.chi4v 1.318
_pdbe_chem_comp_rdkit_properties.chi0n 80.213
_pdbe_chem_comp_rdkit_properties.chi1n 39.476
_pdbe_chem_comp_rdkit_properties.chi2n 2.260
_pdbe_chem_comp_rdkit_properties.chi3n 2.260
_pdbe_chem_comp_rdkit_properties.chi4n 1.123
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.950
_pdbe_chem_comp_rdkit_properties.kappa1 5.763
_pdbe_chem_comp_rdkit_properties.kappa2 28.183
_pdbe_chem_comp_rdkit_properties.kappa3 30.019
_pdbe_chem_comp_rdkit_properties.Phi 4.060
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6PH UniChem PDBe 6PH
6PH UniChem ZINC ZINC000058633411
6PH UniChem PubChem 447791
6PH UniChem NMRShiftDB 60020039
6PH UniChem LipidMaps LMGP10010938
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6PH P -0.929 -0.851 4.825 ETKDGv3 1
6PH O11 -1.080 -2.264 3.882 ETKDGv3 2
6PH O12 -1.929 -0.912 5.956 ETKDGv3 3
6PH O13 -1.250 0.515 3.877 ETKDGv3 4
6PH O14 0.631 -0.746 5.476 ETKDGv3 5
6PH C1 -0.134 -2.207 2.841 ETKDGv3 6
6PH C2 -0.305 -3.422 1.915 ETKDGv3 7
6PH C3 -1.711 -3.495 1.299 ETKDGv3 8
6PH O31 -1.946 -2.397 0.417 ETKDGv3 9
6PH O32 -3.160 -1.125 1.924 ETKDGv3 10
6PH C31 -2.620 -1.228 0.789 ETKDGv3 11
6PH C32 -2.727 -0.100 -0.190 ETKDGv3 12
6PH C33 -3.714 -0.420 -1.320 ETKDGv3 13
6PH C34 -5.170 -0.457 -0.824 ETKDGv3 14
6PH C35 -6.163 -0.883 -1.921 ETKDGv3 15
6PH C36 -6.244 0.068 -3.131 ETKDGv3 16
6PH C37 -6.584 1.533 -2.794 ETKDGv3 17
6PH C38 -7.887 1.735 -1.999 ETKDGv3 18
6PH C39 -9.136 1.281 -2.775 ETKDGv3 19
6PH C3A -10.438 1.538 -2.000 ETKDGv3 20
6PH C3B -10.838 3.021 -1.985 ETKDGv3 21
6PH C3C -12.203 3.213 -1.315 ETKDGv3 22
6PH C3D -12.603 4.686 -1.289 ETKDGv3 23
6PH O21 0.656 -3.371 0.860 ETKDGv3 24
6PH O22 2.450 -4.079 2.139 ETKDGv3 25
6PH C21 2.013 -3.663 1.032 ETKDGv3 26
6PH C22 2.960 -3.433 -0.102 ETKDGv3 27
6PH C23 3.376 -1.957 -0.152 ETKDGv3 28
6PH C24 4.213 -1.612 -1.397 ETKDGv3 29
6PH C25 5.554 -2.360 -1.505 ETKDGv3 30
6PH C26 6.492 -2.080 -0.322 ETKDGv3 31
6PH C27 7.896 -2.646 -0.585 ETKDGv3 32
6PH C28 8.815 -2.574 0.648 ETKDGv3 33
6PH C29 9.047 -1.157 1.202 ETKDGv3 34
6PH C2A 9.702 -0.215 0.177 ETKDGv3 35
6PH C2B 10.165 1.116 0.798 ETKDGv3 36
6PH C2C 9.049 1.959 1.441 ETKDGv3 37
6PH C2D 7.965 2.387 0.437 ETKDGv3 38
6PH C2E 6.903 3.301 1.071 ETKDGv3 39
6PH C2F 7.415 4.719 1.322 ETKDGv3 40
6PH HO13 -1.090 1.285 4.480 ETKDGv3 41
6PH HO14 1.160 -0.257 4.797 ETKDGv3 42
6PH H1 -0.244 -1.278 2.237 ETKDGv3 43
6PH H1A 0.895 -2.235 3.263 ETKDGv3 44
6PH H2 -0.151 -4.350 2.510 ETKDGv3 45
6PH H3 -1.779 -4.431 0.706 ETKDGv3 46
6PH H3A -2.493 -3.558 2.087 ETKDGv3 47
6PH H32 -3.033 0.834 0.331 ETKDGv3 48
6PH H32A -1.722 0.076 -0.629 ETKDGv3 49
6PH H33 -3.609 0.371 -2.091 ETKDGv3 50
6PH H33A -3.446 -1.393 -1.788 ETKDGv3 51
6PH H34 -5.254 -1.194 0.003 ETKDGv3 52
6PH H34A -5.455 0.532 -0.407 ETKDGv3 53
6PH H35 -5.877 -1.893 -2.288 ETKDGv3 54
6PH H35A -7.172 -0.992 -1.469 ETKDGv3 55
6PH H36 -5.278 0.047 -3.679 ETKDGv3 56
6PH H36A -6.998 -0.330 -3.843 ETKDGv3 57
6PH H37 -6.655 2.104 -3.745 ETKDGv3 58
6PH H37A -5.744 1.983 -2.223 ETKDGv3 59
6PH H38 -7.968 2.819 -1.775 ETKDGv3 60
6PH H38A -7.831 1.206 -1.024 ETKDGv3 61
6PH H39 -9.069 0.188 -2.958 ETKDGv3 62
6PH H39A -9.177 1.788 -3.764 ETKDGv3 63
6PH H3AA -11.249 0.956 -2.491 ETKDGv3 64
6PH H3AB -10.338 1.161 -0.958 ETKDGv3 65
6PH H3B -10.080 3.610 -1.427 ETKDGv3 66
6PH H3BA -10.886 3.402 -3.029 ETKDGv3 67
6PH H3C -12.166 2.832 -0.271 ETKDGv3 68
6PH H3CA -12.978 2.641 -1.871 ETKDGv3 69
6PH H3D -13.594 4.793 -0.801 ETKDGv3 70
6PH H3DA -11.858 5.278 -0.715 ETKDGv3 71
6PH H3DB -12.671 5.085 -2.324 ETKDGv3 72
6PH H22 2.460 -3.718 -1.053 ETKDGv3 73
6PH H22A 3.852 -4.080 0.034 ETKDGv3 74
6PH H23 3.929 -1.686 0.772 ETKDGv3 75
6PH H23A 2.459 -1.327 -0.178 ETKDGv3 76
6PH H24 3.612 -1.830 -2.307 ETKDGv3 77
6PH H24A 4.412 -0.518 -1.396 ETKDGv3 78
6PH H25 5.379 -3.453 -1.601 ETKDGv3 79
6PH H25A 6.049 -2.026 -2.443 ETKDGv3 80
6PH H26 6.081 -2.550 0.597 ETKDGv3 81
6PH H26A 6.557 -0.982 -0.168 ETKDGv3 82
6PH H27 8.364 -2.116 -1.442 ETKDGv3 83
6PH H27A 7.804 -3.716 -0.875 ETKDGv3 84
6PH H28 8.379 -3.201 1.457 ETKDGv3 85
6PH H28A 9.797 -3.023 0.384 ETKDGv3 86
6PH H29 8.083 -0.735 1.554 ETKDGv3 87
6PH H29A 9.711 -1.242 2.089 ETKDGv3 88
6PH H2A 10.595 -0.718 -0.253 ETKDGv3 89
6PH H2AA 9.006 -0.011 -0.663 ETKDGv3 90
6PH H2B 10.661 1.720 0.007 ETKDGv3 91
6PH H2C 9.529 2.863 1.870 ETKDGv3 92
6PH H2D 8.430 2.896 -0.436 ETKDGv3 93
6PH H2DA 7.439 1.484 0.063 ETKDGv3 94
6PH H2E 6.538 2.861 2.024 ETKDGv3 95
6PH H2F 7.828 5.155 0.387 ETKDGv3 96
6PH H2FA 6.574 5.358 1.666 ETKDGv3 97
6PH H58 10.935 0.901 1.570 ETKDGv3 98
6PH H59 8.588 1.406 2.286 ETKDGv3 99
6PH H60 6.036 3.364 0.378 ETKDGv3 100
6PH H61 8.196 4.725 2.110 ETKDGv3 101
#