data_6PN
#
_chem_comp.id 6PN
_chem_comp.name 5-hexyl-2-phenoxyphenol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H22 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-05-15
_chem_comp.pdbx_modified_date 2013-05-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 270.366
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6PN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4BNH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6PN CAA CAA C 0 1 N N N N N N 15.473 48.387 4.709 -7.948 -1.360 1.169 CAA 6PN 1
6PN OAB OAB O 0 1 N N N N N N 20.828 40.752 4.234 1.120 3.145 0.687 OAB 6PN 2
6PN CAC CAC C 0 1 Y N N N N N 23.655 43.039 0.467 5.512 -2.083 -0.081 CAC 6PN 3
6PN CAD CAD C 0 1 Y N N N N N 22.685 43.638 1.279 5.028 -1.362 -1.157 CAD 6PN 4
6PN CAE CAE C 0 1 Y N N N N N 24.494 42.054 0.981 5.115 -1.764 1.204 CAE 6PN 5
6PN CAF CAF C 0 1 Y N N N N N 22.514 43.250 2.601 4.146 -0.319 -0.949 CAF 6PN 6
6PN CAG CAG C 0 1 Y N N N N N 24.321 41.674 2.317 4.233 -0.723 1.417 CAG 6PN 7
6PN CAH CAH C 0 1 Y N N N N N 21.435 44.088 6.664 -0.119 -0.475 -0.866 CAH 6PN 8
6PN CAI CAI C 0 1 Y N N N N N 22.478 43.501 5.961 1.181 -0.329 -0.417 CAI 6PN 9
6PN CAJ CAJ C 0 1 Y N N N N N 19.923 42.444 5.759 -0.588 1.799 -0.275 CAJ 6PN 10
6PN CAK CAK C 0 1 N N N N N N 16.835 47.873 5.210 -7.062 -0.878 0.019 CAK 6PN 11
6PN CAL CAL C 0 1 N N N N N N 16.650 46.875 6.332 -5.625 -0.710 0.517 CAL 6PN 12
6PN CAM CAM C 0 1 N N N N N N 17.944 46.462 7.021 -4.739 -0.228 -0.634 CAM 6PN 13
6PN CAN CAN C 0 1 N N N N N N 18.405 45.180 6.358 -3.302 -0.061 -0.135 CAN 6PN 14
6PN CAO CAO C 0 1 N N N N N N 19.060 44.223 7.349 -2.417 0.421 -1.286 CAO 6PN 15
6PN OAP OAP O 0 1 N N N N N N 23.244 41.856 4.429 2.879 1.029 0.547 OAP 6PN 16
6PN CAQ CAQ C 0 1 Y N N N N N 20.162 43.535 6.588 -1.001 0.586 -0.795 CAQ 6PN 17
6PN CAR CAR C 0 1 Y N N N N N 20.972 41.843 5.053 0.712 1.952 0.176 CAR 6PN 18
6PN CAS CAS C 0 1 Y N N N N N 23.337 42.258 3.123 3.746 0.004 0.340 CAS 6PN 19
6PN CAT CAT C 0 1 Y N N N N N 22.226 42.435 5.107 1.601 0.884 0.105 CAT 6PN 20
6PN HAA HAA H 0 1 N N N N N N 15.630 49.110 3.895 -7.926 -0.627 1.976 HAA 6PN 21
6PN HAAA HAAA H 0 0 N N N N N N 14.876 47.541 4.338 -8.971 -1.479 0.814 HAAA 6PN 22
6PN HAAB HAAB H 0 0 N N N N N N 14.939 48.877 5.537 -7.577 -2.317 1.537 HAAB 6PN 23
6PN HOAB HOAB H 0 0 N N N N N N 21.671 40.521 3.863 0.989 3.229 1.642 HOAB 6PN 24
6PN HAC HAC H 0 1 N N N N N N 23.753 43.343 -0.565 6.198 -2.901 -0.246 HAC 6PN 25
6PN HAD HAD H 0 1 N N N N N N 22.058 44.416 0.870 5.340 -1.613 -2.159 HAD 6PN 26
6PN HAE HAE H 0 1 N N N N N N 25.256 41.597 0.367 5.494 -2.330 2.042 HAE 6PN 27
6PN HAF HAF H 0 1 N N N N N N 21.754 43.711 3.214 3.769 0.245 -1.789 HAF 6PN 28
6PN HAG HAG H 0 1 N N N N N N 24.962 40.912 2.736 3.923 -0.474 2.421 HAG 6PN 29
6PN HAH HAH H 0 1 N N N N N N 21.611 44.968 7.265 -0.444 -1.420 -1.277 HAH 6PN 30
6PN HAI HAI H 0 1 N N N N N N 23.485 43.873 6.078 1.868 -1.160 -0.474 HAI 6PN 31
6PN HAJ HAJ H 0 1 N N N N N N 18.920 42.057 5.659 -1.280 2.627 -0.222 HAJ 6PN 32
6PN HAK HAK H 0 1 N N N N N N 17.366 47.387 4.378 -7.084 -1.610 -0.788 HAK 6PN 33
6PN HAKA HAKA H 0 0 N N N N N N 17.429 48.723 5.577 -7.433 0.079 -0.349 HAKA 6PN 34
6PN HAL HAL H 0 1 N N N N N N 15.986 47.323 7.086 -5.603 0.022 1.324 HAL 6PN 35
6PN HALA HALA H 0 0 N N N N N N 16.177 45.973 5.917 -5.254 -1.667 0.885 HALA 6PN 36
6PN HAM HAM H 0 1 N N N N N N 18.705 47.247 6.898 -4.761 -0.961 -1.441 HAM 6PN 37
6PN HAMA HAMA H 0 0 N N N N N N 17.764 46.290 8.093 -5.110 0.729 -1.001 HAMA 6PN 38
6PN HAN HAN H 0 1 N N N N N N 17.534 44.682 5.907 -3.281 0.672 0.672 HAN 6PN 39
6PN HANA HANA H 0 0 N N N N N N 19.133 45.429 5.572 -2.931 -1.017 0.232 HANA 6PN 40
6PN HAO HAO H 0 1 N N N N N N 19.474 44.780 8.203 -2.438 -0.311 -2.093 HAO 6PN 41
6PN HAOA HAOA H 0 0 N N N N N N 18.328 43.487 7.712 -2.787 1.378 -1.654 HAOA 6PN 42
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6PN CAA CAK SING N N 1
6PN OAB CAR SING N N 2
6PN CAC CAD DOUB Y N 3
6PN CAC CAE SING Y N 4
6PN CAD CAF SING Y N 5
6PN CAE CAG DOUB Y N 6
6PN CAF CAS DOUB Y N 7
6PN CAG CAS SING Y N 8
6PN CAH CAI DOUB Y N 9
6PN CAH CAQ SING Y N 10
6PN CAI CAT SING Y N 11
6PN CAJ CAQ DOUB Y N 12
6PN CAJ CAR SING Y N 13
6PN CAK CAL SING N N 14
6PN CAL CAM SING N N 15
6PN CAM CAN SING N N 16
6PN CAN CAO SING N N 17
6PN CAO CAQ SING N N 18
6PN OAP CAS SING N N 19
6PN OAP CAT SING N N 20
6PN CAR CAT DOUB Y N 21
6PN CAA HAA SING N N 22
6PN CAA HAAA SING N N 23
6PN CAA HAAB SING N N 24
6PN OAB HOAB SING N N 25
6PN CAC HAC SING N N 26
6PN CAD HAD SING N N 27
6PN CAE HAE SING N N 28
6PN CAF HAF SING N N 29
6PN CAG HAG SING N N 30
6PN CAH HAH SING N N 31
6PN CAI HAI SING N N 32
6PN CAJ HAJ SING N N 33
6PN CAK HAK SING N N 34
6PN CAK HAKA SING N N 35
6PN CAL HAL SING N N 36
6PN CAL HALA SING N N 37
6PN CAM HAM SING N N 38
6PN CAM HAMA SING N N 39
6PN CAN HAN SING N N 40
6PN CAN HANA SING N N 41
6PN CAO HAO SING N N 42
6PN CAO HAOA SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6PN SMILES ACDLabs 12.01 O(c1ccccc1)c2ccc(cc2O)CCCCCC
6PN InChI InChI 1.03 InChI=1S/C18H22O2/c1-2-3-4-6-9-15-12-13-18(17(19)14-15)20-16-10-7-5-8-11-16/h5,7-8,10-14,19H,2-4,6,9H2,1H3
6PN InChIKey InChI 1.03 SXGQGHHNOWYMRT-UHFFFAOYSA-N
6PN SMILES_CANONICAL CACTVS 3.370 CCCCCCc1ccc(Oc2ccccc2)c(O)c1
6PN SMILES CACTVS 3.370 CCCCCCc1ccc(Oc2ccccc2)c(O)c1
6PN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCCCc1ccc(c(c1)O)Oc2ccccc2
6PN SMILES "OpenEye OEToolkits" 1.7.6 CCCCCCc1ccc(c(c1)O)Oc2ccccc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6PN "SYSTEMATIC NAME" ACDLabs 12.01 5-hexyl-2-phenoxyphenol
6PN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 5-hexyl-2-phenoxy-phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6PN 'Create component' 2013-05-15 EBI
6PN 'Initial release' 2013-06-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6PN CAA C 3.000 -7.125 1
6PN OAB O 4.299 2.625 2
6PN CAC C 10.794 6.375 3
6PN CAD C 10.794 4.875 4
6PN CAE C 9.495 7.125 5
6PN CAF C 9.495 4.125 6
6PN CAG C 8.196 6.375 7
6PN CAH C 8.196 0.375 8
6PN CAI C 8.196 1.875 9
6PN CAJ C 5.598 0.375 10
6PN CAK C 4.299 -6.375 11
6PN CAL C 4.299 -4.875 12
6PN CAM C 5.598 -4.125 13
6PN CAN C 5.598 -2.625 14
6PN CAO C 6.897 -1.875 15
6PN OAP O 6.897 4.125 16
6PN CAQ C 6.897 -0.375 17
6PN CAR C 5.598 1.875 18
6PN CAS C 8.196 4.875 19
6PN CAT C 6.897 2.625 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6PN CAA CAK SINGLE NONE 1
6PN OAB CAR SINGLE NONE 2
6PN CAC CAD DOUBLE NONE 3
6PN CAC CAE SINGLE NONE 4
6PN CAD CAF SINGLE NONE 5
6PN CAE CAG DOUBLE NONE 6
6PN CAF CAS DOUBLE NONE 7
6PN CAG CAS SINGLE NONE 8
6PN CAH CAI DOUBLE NONE 9
6PN CAH CAQ SINGLE NONE 10
6PN CAI CAT SINGLE NONE 11
6PN CAJ CAQ DOUBLE NONE 12
6PN CAJ CAR SINGLE NONE 13
6PN CAK CAL SINGLE NONE 14
6PN CAL CAM SINGLE NONE 15
6PN CAM CAN SINGLE NONE 16
6PN CAN CAO SINGLE NONE 17
6PN CAO CAQ SINGLE NONE 18
6PN OAP CAS SINGLE NONE 19
6PN OAP CAT SINGLE NONE 20
6PN CAR CAT DOUBLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6PN MurckoScaffold S1 scaffold c1ccc(Oc2ccccc2)cc1 InChI=1S/C12H10O/c1-3-7-11(8-4-1)13-12-9-5-2-6-10-12/h1-10H USIUVYZYUHIAEV-UHFFFAOYSA-N
6PN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6PN CAC S1 1
6PN CAD S1 1
6PN CAE S1 1
6PN CAF S1 1
6PN CAG S1 1
6PN CAH S1 1
6PN CAI S1 1
6PN CAJ S1 1
6PN OAP S1 1
6PN CAQ S1 1
6PN CAR S1 1
6PN CAS S1 1
6PN CAT S1 1
6PN CAC F1 1
6PN CAD F1 1
6PN CAF F1 1
6PN CAS F1 1
6PN CAG F1 1
6PN CAE F1 1
6PN CAH F1 2
6PN CAI F1 2
6PN CAT F1 2
6PN CAR F1 2
6PN CAJ F1 2
6PN CAQ F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 6PN
_pdbe_chem_comp_rdkit_properties.exactmw 270.162
_pdbe_chem_comp_rdkit_properties.amw 270.372
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 42
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 151.582
_pdbe_chem_comp_rdkit_properties.tpsa 29.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.865
_pdbe_chem_comp_rdkit_properties.CrippenMR 80.373
_pdbe_chem_comp_rdkit_properties.chi0v 9.816
_pdbe_chem_comp_rdkit_properties.chi1v 5.112
_pdbe_chem_comp_rdkit_properties.chi2v 1.802
_pdbe_chem_comp_rdkit_properties.chi3v 1.802
_pdbe_chem_comp_rdkit_properties.chi4v 1.060
_pdbe_chem_comp_rdkit_properties.chi0n 31.816
_pdbe_chem_comp_rdkit_properties.chi1n 16.021
_pdbe_chem_comp_rdkit_properties.chi2n 1.802
_pdbe_chem_comp_rdkit_properties.chi3n 1.802
_pdbe_chem_comp_rdkit_properties.chi4n 1.060
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.960
_pdbe_chem_comp_rdkit_properties.kappa1 3.110
_pdbe_chem_comp_rdkit_properties.kappa2 7.586
_pdbe_chem_comp_rdkit_properties.kappa3 4.302
_pdbe_chem_comp_rdkit_properties.Phi 1.180
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6PN UniChem ChEMBL CHEMBL264682
6PN UniChem PDBe 6PN
6PN UniChem ZINC ZINC000014961112
6PN UniChem SureChEMBL SCHEMBL2878546
6PN UniChem 'PubChem TPHARMA' 16689583
6PN UniChem PubChem 5274977
6PN UniChem Nikkaji J3.334.496A
6PN UniChem BRENDA 228111
6PN UniChem BindingDb 16297
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6PN CAA -6.649 0.685 -1.311 ETKDGv3 1
6PN OAB 2.005 -3.043 0.880 ETKDGv3 2
6PN CAC 7.136 1.259 -0.439 ETKDGv3 3
6PN CAD 7.137 0.703 0.778 ETKDGv3 4
6PN CAE 5.962 1.102 -1.321 ETKDGv3 5
6PN CAF 5.960 -0.060 1.245 ETKDGv3 6
6PN CAG 4.893 0.414 -0.900 ETKDGv3 7
6PN CAH 0.675 0.828 -0.140 ETKDGv3 8
6PN CAI 1.952 0.643 0.212 ETKDGv3 9
6PN CAJ 0.180 -1.543 0.152 ETKDGv3 10
6PN CAK -6.304 -0.336 -0.228 ETKDGv3 11
6PN CAL -4.798 -0.632 -0.150 ETKDGv3 12
6PN CAM -3.989 0.564 0.383 ETKDGv3 13
6PN CAN -2.533 0.195 0.707 ETKDGv3 14
6PN CAO -1.703 -0.094 -0.552 ETKDGv3 15
6PN OAP 3.784 -0.924 0.931 ETKDGv3 16
6PN CAQ -0.260 -0.320 -0.192 ETKDGv3 17
6PN CAR 1.592 -1.754 0.539 ETKDGv3 18
6PN CAS 4.879 -0.186 0.461 ETKDGv3 19
6PN CAT 2.451 -0.716 0.551 ETKDGv3 20
6PN HAA -6.243 0.361 -2.294 ETKDGv3 21
6PN HAAA -6.241 1.684 -1.053 ETKDGv3 22
6PN HAAB -7.752 0.773 -1.397 ETKDGv3 23
6PN HOAB 2.958 -3.256 1.150 ETKDGv3 24
6PN HAC 7.997 1.818 -0.783 ETKDGv3 25
6PN HAD 7.999 0.811 1.424 ETKDGv3 26
6PN HAE 5.974 1.534 -2.314 ETKDGv3 27
6PN HAF 5.973 -0.507 2.231 ETKDGv3 28
6PN HAG 4.052 0.280 -1.567 ETKDGv3 29
6PN HAH 0.323 1.825 -0.374 ETKDGv3 30
6PN HAI 2.613 1.498 0.273 ETKDGv3 31
6PN HAJ -0.496 -2.389 0.150 ETKDGv3 32
6PN HAK -6.836 -1.284 -0.460 ETKDGv3 33
6PN HAKA -6.675 0.025 0.756 ETKDGv3 34
6PN HAL -4.655 -1.499 0.531 ETKDGv3 35
6PN HALA -4.431 -0.927 -1.156 ETKDGv3 36
6PN HAM -4.002 1.395 -0.354 ETKDGv3 37
6PN HAMA -4.464 0.933 1.318 ETKDGv3 38
6PN HAN -2.509 -0.686 1.386 ETKDGv3 39
6PN HANA -2.075 1.050 1.250 ETKDGv3 40
6PN HAO -2.100 -0.991 -1.076 ETKDGv3 41
6PN HAOA -1.778 0.763 -1.256 ETKDGv3 42
#