data_6T5
#
_chem_comp.id 6T5
_chem_comp.name 6-methyl-5-[(4-propan-2-ylphenyl)amino]-2~{H}-1,2,4-triazin-3-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H16 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-17
_chem_comp.pdbx_modified_date 2016-07-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 244.292
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6T5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5KH9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6T5 O O1 O 0 1 N N N N N N -2.552 5.217 6.263 -2.370 -2.854 -0.257 O 6T5 1
6T5 C3 C1 C 0 1 N N N N N N -2.188 4.259 6.976 -2.617 -1.665 -0.135 C3 6T5 2
6T5 N1 N1 N 0 1 N N N N N N -0.881 3.896 6.961 -3.891 -1.259 0.008 N1 6T5 3
6T5 N2 N2 N 0 1 N N N N N N -0.348 2.881 7.718 -4.187 -0.014 0.139 N2 6T5 4
6T5 C1 C2 C 0 1 N N N N N N -1.156 2.196 8.454 -3.256 0.900 0.136 C1 6T5 5
6T5 C C3 C 0 1 N N N N N N -0.580 1.082 9.258 -3.618 2.355 0.290 C 6T5 6
6T5 N N3 N 0 1 N N N N N N -3.050 3.553 7.778 -1.619 -0.777 -0.141 N 6T5 7
6T5 C2 C4 C 0 1 N N N N N N -2.570 2.526 8.494 -1.903 0.514 -0.013 C2 6T5 8
6T5 N3 N4 N 0 1 N N N N N N -3.441 2.025 9.393 -0.900 1.457 -0.020 N3 6T5 9
6T5 C4 C5 C 0 1 Y N N N N N -4.854 2.124 9.490 0.438 1.055 -0.048 C4 6T5 10
6T5 C9 C6 C 0 1 Y N N N N N -5.434 1.806 10.717 1.383 1.826 -0.712 C9 6T5 11
6T5 C8 C7 C 0 1 Y N N N N N -6.805 1.898 10.883 2.705 1.425 -0.738 C8 6T5 12
6T5 C7 C8 C 0 1 Y N N N N N -7.636 2.258 9.824 3.087 0.257 -0.103 C7 6T5 13
6T5 C10 C9 C 0 1 N N N N N N -9.141 2.352 10.053 4.530 -0.177 -0.133 C10 6T5 14
6T5 C12 C10 C 0 1 N N N N N N -9.590 3.786 10.369 5.066 -0.266 1.297 C12 6T5 15
6T5 C11 C11 C 0 1 N N N N N N -9.969 1.728 8.924 4.636 -1.548 -0.803 C11 6T5 16
6T5 C6 C12 C 0 1 Y N N N N N -7.053 2.507 8.583 2.149 -0.512 0.560 C6 6T5 17
6T5 C5 C13 C 0 1 Y N N N N N -5.682 2.429 8.407 0.827 -0.114 0.594 C5 6T5 18
6T5 H1 H1 H 0 1 N N N N N N -0.264 4.401 6.358 -4.602 -1.919 0.014 H1 6T5 19
6T5 H2 H2 H 0 1 N N N N N N 0.504 1.024 9.081 -4.699 2.451 0.391 H2 6T5 20
6T5 H3 H3 H 0 1 N N N N N N -0.768 1.266 10.326 -3.133 2.758 1.179 H3 6T5 21
6T5 H4 H4 H 0 1 N N N N N N -1.051 0.134 8.961 -3.285 2.908 -0.588 H4 6T5 22
6T5 H5 H5 H 0 1 N N N N N N -3.016 1.488 10.121 -1.122 2.401 -0.006 H5 6T5 23
6T5 H6 H6 H 0 1 N N N N N N -4.812 1.487 11.540 1.085 2.737 -1.209 H6 6T5 24
6T5 H7 H7 H 0 1 N N N N N N -7.238 1.687 11.850 3.440 2.024 -1.254 H7 6T5 25
6T5 H8 H8 H 0 1 N N N N N N -9.354 1.758 10.954 5.116 0.549 -0.697 H8 6T5 26
6T5 H9 H9 H 0 1 N N N N N N -8.971 4.194 11.182 4.480 -0.992 1.860 H9 6T5 27
6T5 H10 H10 H 0 1 N N N N N N -9.475 4.412 9.472 6.110 -0.580 1.275 H10 6T5 28
6T5 H11 H11 H 0 1 N N N N N N -10.645 3.780 10.679 4.991 0.711 1.774 H11 6T5 29
6T5 H12 H12 H 0 1 N N N N N N -11.040 1.831 9.154 4.254 -1.485 -1.822 H12 6T5 30
6T5 H13 H13 H 0 1 N N N N N N -9.746 2.243 7.978 5.679 -1.862 -0.825 H13 6T5 31
6T5 H14 H14 H 0 1 N N N N N N -9.715 0.662 8.830 4.050 -2.274 -0.240 H14 6T5 32
6T5 H15 H15 H 0 1 N N N N N N -7.682 2.765 7.744 2.451 -1.424 1.054 H15 6T5 33
6T5 H16 H16 H 0 1 N N N N N N -5.252 2.604 7.432 0.094 -0.716 1.112 H16 6T5 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6T5 O C3 DOUB N N 1
6T5 N1 C3 SING N N 2
6T5 N1 N2 SING N N 3
6T5 C3 N SING N N 4
6T5 N2 C1 DOUB N N 5
6T5 N C2 DOUB N N 6
6T5 C5 C6 DOUB Y N 7
6T5 C5 C4 SING Y N 8
6T5 C1 C2 SING N N 9
6T5 C1 C SING N N 10
6T5 C2 N3 SING N N 11
6T5 C6 C7 SING Y N 12
6T5 C11 C10 SING N N 13
6T5 N3 C4 SING N N 14
6T5 C4 C9 DOUB Y N 15
6T5 C7 C10 SING N N 16
6T5 C7 C8 DOUB Y N 17
6T5 C10 C12 SING N N 18
6T5 C9 C8 SING Y N 19
6T5 N1 H1 SING N N 20
6T5 C H2 SING N N 21
6T5 C H3 SING N N 22
6T5 C H4 SING N N 23
6T5 N3 H5 SING N N 24
6T5 C9 H6 SING N N 25
6T5 C8 H7 SING N N 26
6T5 C10 H8 SING N N 27
6T5 C12 H9 SING N N 28
6T5 C12 H10 SING N N 29
6T5 C12 H11 SING N N 30
6T5 C11 H12 SING N N 31
6T5 C11 H13 SING N N 32
6T5 C11 H14 SING N N 33
6T5 C6 H15 SING N N 34
6T5 C5 H16 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6T5 InChI InChI 1.03 InChI=1S/C13H16N4O/c1-8(2)10-4-6-11(7-5-10)14-12-9(3)16-17-13(18)15-12/h4-8H,1-3H3,(H2,14,15,17,18)
6T5 InChIKey InChI 1.03 SRUWPAISQUBIOQ-UHFFFAOYSA-N
6T5 SMILES_CANONICAL CACTVS 3.385 CC(C)c1ccc(NC2=NC(=O)NN=C2C)cc1
6T5 SMILES CACTVS 3.385 CC(C)c1ccc(NC2=NC(=O)NN=C2C)cc1
6T5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 CC1=NNC(=O)N=C1Nc2ccc(cc2)C(C)C
6T5 SMILES "OpenEye OEToolkits" 2.0.5 CC1=NNC(=O)N=C1Nc2ccc(cc2)C(C)C
#
_pdbx_chem_comp_identifier.comp_id 6T5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier 6-methyl-5-[(4-propan-2-ylphenyl)amino]-2~{H}-1,2,4-triazin-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6T5 'Create component' 2016-06-17 RCSB
6T5 'Initial release' 2016-07-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6T5 O O 9.495 -1.875 1
6T5 C3 C 8.196 -2.625 2
6T5 N1 N 8.196 -4.125 3
6T5 N2 N 6.897 -4.875 4
6T5 C1 C 5.598 -4.125 5
6T5 C C 4.299 -4.875 6
6T5 N N 6.897 -1.875 7
6T5 C2 C 5.598 -2.625 8
6T5 N3 N 4.299 -1.875 9
6T5 C4 C 4.299 -0.375 10
6T5 C9 C 5.598 0.375 11
6T5 C8 C 5.598 1.875 12
6T5 C7 C 4.299 2.625 13
6T5 C10 C 4.299 4.125 14
6T5 C12 C 5.598 4.875 15
6T5 C11 C 3.000 4.875 16
6T5 C6 C 3.000 1.875 17
6T5 C5 C 3.000 0.375 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6T5 O C3 DOUBLE NONE 1
6T5 N1 C3 SINGLE NONE 2
6T5 N1 N2 SINGLE NONE 3
6T5 C3 N SINGLE NONE 4
6T5 N2 C1 DOUBLE NONE 5
6T5 N C2 DOUBLE NONE 6
6T5 C5 C6 DOUBLE NONE 7
6T5 C5 C4 SINGLE NONE 8
6T5 C1 C2 SINGLE NONE 9
6T5 C1 C SINGLE NONE 10
6T5 C2 N3 SINGLE NONE 11
6T5 C6 C7 SINGLE NONE 12
6T5 C11 C10 SINGLE NONE 13
6T5 N3 C4 SINGLE NONE 14
6T5 C4 C9 DOUBLE NONE 15
6T5 C7 C10 SINGLE NONE 16
6T5 C7 C8 DOUBLE NONE 17
6T5 C10 C12 SINGLE NONE 18
6T5 C9 C8 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6T5 MurckoScaffold S1 scaffold 'O=c1nc(Nc2ccccc2)cn[nH]1' InChI=1S/C9H8N4O/c14-9-12-8(6-10-13-9)11-7-4-2-1-3-5-7/h1-6H,(H2,11,12,13,14) DIMAUKJGQNLYGC-UHFFFAOYSA-N
6T5 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6T5 O S1 1
6T5 C3 S1 1
6T5 N1 S1 1
6T5 N2 S1 1
6T5 C1 S1 1
6T5 N S1 1
6T5 C2 S1 1
6T5 N3 S1 1
6T5 C4 S1 1
6T5 C9 S1 1
6T5 C8 S1 1
6T5 C7 S1 1
6T5 C6 S1 1
6T5 C5 S1 1
6T5 C4 F1 1
6T5 C5 F1 1
6T5 C6 F1 1
6T5 C7 F1 1
6T5 C8 F1 1
6T5 C9 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6T5
_pdbe_chem_comp_rdkit_properties.exactmw 244.132
_pdbe_chem_comp_rdkit_properties.amw 244.298
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.308
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 127.883
_pdbe_chem_comp_rdkit_properties.tpsa 70.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.370
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.131
_pdbe_chem_comp_rdkit_properties.chi0v 8.697
_pdbe_chem_comp_rdkit_properties.chi1v 4.496
_pdbe_chem_comp_rdkit_properties.chi2v 1.728
_pdbe_chem_comp_rdkit_properties.chi3v 1.728
_pdbe_chem_comp_rdkit_properties.chi4v 0.974
_pdbe_chem_comp_rdkit_properties.chi0n 24.697
_pdbe_chem_comp_rdkit_properties.chi1n 12.390
_pdbe_chem_comp_rdkit_properties.chi2n 1.728
_pdbe_chem_comp_rdkit_properties.chi3n 1.728
_pdbe_chem_comp_rdkit_properties.chi4n 0.974
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.170
_pdbe_chem_comp_rdkit_properties.kappa1 3.230
_pdbe_chem_comp_rdkit_properties.kappa2 4.995
_pdbe_chem_comp_rdkit_properties.kappa3 2.739
_pdbe_chem_comp_rdkit_properties.Phi 0.896
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6T5 UniChem ChEMBL CHEMBL4060746
6T5 UniChem PDBe 6T5
6T5 UniChem ZINC ZINC000000114363
6T5 UniChem eMolecules 5648776
6T5 UniChem PubChem 4074449
6T5 UniChem Mcule MCULE-8755371649
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6T5 O 3.551 -3.285 1.153 ETKDGv3 1
6T5 C3 3.747 -2.077 0.860 ETKDGv3 2
6T5 N1 5.069 -1.574 0.678 ETKDGv3 3
6T5 N2 5.244 -0.220 0.347 ETKDGv3 4
6T5 C1 4.228 0.583 0.199 ETKDGv3 5
6T5 C 4.483 2.016 -0.157 ETKDGv3 6
6T5 N 2.647 -1.180 0.706 ETKDGv3 7
6T5 C2 2.837 0.070 0.389 ETKDGv3 8
6T5 N3 1.710 0.958 0.277 ETKDGv3 9
6T5 C4 0.356 0.522 0.069 ETKDGv3 10
6T5 C9 0.068 -0.547 -0.696 ETKDGv3 11
6T5 C8 -1.335 -0.953 -0.918 ETKDGv3 12
6T5 C7 -2.346 -0.248 -0.377 ETKDGv3 13
6T5 C10 -3.786 -0.664 -0.608 ETKDGv3 14
6T5 C12 -4.556 0.425 -1.363 ETKDGv3 15
6T5 C11 -4.476 -1.007 0.717 ETKDGv3 16
6T5 C6 -2.026 0.951 0.443 ETKDGv3 17
6T5 C5 -0.754 1.313 0.647 ETKDGv3 18
6T5 H1 5.899 -2.197 0.787 ETKDGv3 19
6T5 H2 4.226 2.666 0.705 ETKDGv3 20
6T5 H3 3.868 2.303 -1.036 ETKDGv3 21
6T5 H4 5.552 2.175 -0.414 ETKDGv3 22
6T5 H5 1.862 1.976 0.456 ETKDGv3 23
6T5 H6 0.852 -1.113 -1.182 ETKDGv3 24
6T5 H7 -1.531 -1.826 -1.528 ETKDGv3 25
6T5 H8 -3.818 -1.582 -1.238 ETKDGv3 26
6T5 H9 -5.582 0.071 -1.600 ETKDGv3 27
6T5 H10 -4.634 1.354 -0.758 ETKDGv3 28
6T5 H11 -4.042 0.661 -2.319 ETKDGv3 29
6T5 H12 -4.554 -0.114 1.372 ETKDGv3 30
6T5 H13 -5.500 -1.393 0.524 ETKDGv3 31
6T5 H14 -3.903 -1.795 1.251 ETKDGv3 32
6T5 H15 -2.820 1.542 0.881 ETKDGv3 33
6T5 H16 -0.536 2.189 1.246 ETKDGv3 34
#