data_6T8
#
_chem_comp.id 6T8
_chem_comp.name
'N-((S)-3-(4-(aminomethyl)phenyl)-1-(((R)-4-guanidino-1-(5-hydroxy-1,3,2-dioxaborinan-2-yl)butyl)amino)-1-oxopropan-2-yl)benzamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C25 H35 B N6 O5'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-06-20
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 510.394
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6T8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LC0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6T8 O24 O1 O 0 1 N N N N N N 82.675 49.861 152.088 2.108 -1.253 -1.678 O24 6T8 1
6T8 C22 C1 C 0 1 N N N N N N 81.562 50.329 151.941 2.649 -1.652 -0.665 C22 6T8 2
6T8 C25 C2 C 0 1 Y N N N N N 80.434 49.351 151.767 3.653 -2.735 -0.742 C25 6T8 3
6T8 C30 C3 C 0 1 Y N N N N N 80.711 48.042 151.447 4.272 -3.200 0.420 C30 6T8 4
6T8 C29 C4 C 0 1 Y N N N N N 79.719 47.082 151.348 5.208 -4.211 0.342 C29 6T8 5
6T8 C28 C5 C 0 1 Y N N N N N 78.413 47.422 151.569 5.532 -4.764 -0.885 C28 6T8 6
6T8 C27 C6 C 0 1 Y N N N N N 78.093 48.722 151.865 4.922 -4.308 -2.039 C27 6T8 7
6T8 C26 C7 C 0 1 Y N N N N N 79.094 49.689 152.016 3.980 -3.302 -1.974 C26 6T8 8
6T8 N21 N1 N 0 1 N N N N N N 81.317 51.625 152.148 2.340 -1.103 0.526 N21 6T8 9
6T8 C18 C8 C 0 1 N N S N N N 82.196 52.492 152.892 1.350 -0.025 0.601 C18 6T8 10
6T8 C20 C9 C 0 1 N N N N N N 81.765 53.946 152.703 1.823 1.161 -0.241 C20 6T8 11
6T8 C31 C10 C 0 1 Y N N N N N 81.876 54.493 151.294 3.081 1.733 0.359 C31 6T8 12
6T8 C36 C11 C 0 1 Y N N N N N 81.234 55.708 151.102 4.316 1.255 -0.038 C36 6T8 13
6T8 C35 C12 C 0 1 Y N N N N N 81.253 56.339 149.875 5.470 1.780 0.513 C35 6T8 14
6T8 C34 C13 C 0 1 Y N N N N N 81.923 55.764 148.810 5.390 2.782 1.462 C34 6T8 15
6T8 C37 C14 C 0 1 N N N N N N 81.870 56.572 147.536 6.648 3.349 2.068 C37 6T8 16
6T8 N38 N2 N 0 1 N N N N N N 82.494 55.884 146.406 7.007 2.575 3.264 N38 6T8 17
6T8 C33 C15 C 0 1 Y N N N N N 82.582 54.533 148.985 4.155 3.260 1.860 C33 6T8 18
6T8 C32 C16 C 0 1 Y N N N N N 82.559 53.894 150.226 3.001 2.739 1.304 C32 6T8 19
6T8 C17 C17 C 0 1 N N N N N N 82.136 52.228 154.389 0.028 -0.520 0.073 C17 6T8 20
6T8 O19 O2 O 0 1 N N N N N N 81.105 52.506 154.945 -0.011 -1.497 -0.645 O19 6T8 21
6T8 N2 N3 N 0 1 N N N N N N 83.218 51.815 155.078 -1.111 0.122 0.399 N2 6T8 22
6T8 C1 C18 C 0 1 N N R N N N 83.323 51.952 156.538 -2.396 -0.359 -0.113 C1 6T8 23
6T8 B4 B1 B 0 1 N N N N N N 84.068 53.317 156.870 -2.891 0.592 -1.261 B4 6T8 24
6T8 O1 O3 O 0 1 N N N N N N 84.105 53.716 158.230 -2.114 0.785 -2.441 O1 6T8 25
6T8 O3 O4 O 0 1 N N N N N N 83.975 54.389 155.943 -4.134 1.285 -1.156 O3 6T8 26
6T8 C3 C19 C 0 1 N N N N N N 84.103 50.825 157.214 -3.425 -0.370 1.019 C3 6T8 27
6T8 C11 C20 C 0 1 N N N N N N 83.173 49.851 157.906 -4.768 -0.872 0.483 C11 6T8 28
6T8 C12 C21 C 0 1 N N N N N N 82.916 48.653 157.018 -5.797 -0.883 1.615 C12 6T8 29
6T8 N13 N4 N 0 1 N N N N N N 81.593 48.113 157.275 -7.082 -1.364 1.102 N13 6T8 30
6T8 C14 C22 C 0 1 N N N N N N 81.319 46.878 157.675 -8.165 -1.461 1.943 C14 6T8 31
6T8 N15 N5 N 0 1 N N N N N N 82.247 45.982 158.027 -8.042 -1.106 3.266 N15 6T8 32
6T8 N16 N6 N 0 1 N N N N N N 80.101 46.543 157.662 -9.308 -1.889 1.487 N16 6T8 33
6T8 C2 C23 C 0 1 N N N N N N 83.404 55.639 156.334 -4.014 2.681 -1.456 C2 6T8 34
6T8 C4 C24 C 0 1 N N N N N N 83.593 54.999 158.612 -1.946 2.169 -2.772 C4 6T8 35
6T8 C5 C25 C 0 1 N N N N N N 82.606 55.455 157.577 -3.325 2.842 -2.815 C5 6T8 36
6T8 O2 O5 O 0 1 N N N N N N 81.621 54.448 157.332 -3.171 4.232 -3.109 O2 6T8 37
6T8 H1 H1 H 0 1 N N N N N N 81.736 47.754 151.267 4.021 -2.768 1.377 H1 6T8 38
6T8 H2 H2 H 0 1 N N N N N N 79.976 46.064 151.096 5.688 -4.571 1.239 H2 6T8 39
6T8 H3 H3 H 0 1 N N N N N N 77.639 46.671 151.511 6.266 -5.555 -0.940 H3 6T8 40
6T8 H4 H4 H 0 1 N N N N N N 77.057 49.003 151.983 5.179 -4.744 -2.993 H4 6T8 41
6T8 H5 H5 H 0 1 N N N N N N 78.836 50.692 152.323 3.501 -2.950 -2.876 H5 6T8 42
6T8 H6 H6 H 0 1 N N N N N N 80.479 52.015 151.767 2.772 -1.421 1.334 H6 6T8 43
6T8 H7 H7 H 0 1 N N N N N N 83.233 52.375 152.544 1.232 0.289 1.638 H7 6T8 44
6T8 H8 H8 H 0 1 N N N N N N 82.391 54.571 153.357 2.026 0.827 -1.259 H8 6T8 45
6T8 H9 H9 H 0 1 N N N N N N 80.713 54.029 153.014 1.048 1.927 -0.258 H9 6T8 46
6T8 H10 H10 H 0 1 N N N N N N 80.710 56.168 151.927 4.379 0.472 -0.779 H10 6T8 47
6T8 H11 H11 H 0 1 N N N N N N 80.744 57.283 149.746 6.435 1.406 0.203 H11 6T8 48
6T8 H12 H12 H 0 1 N N N N N N 82.394 57.525 147.701 7.458 3.292 1.341 H12 6T8 49
6T8 H13 H13 H 0 1 N N N N N N 80.817 56.771 147.289 6.480 4.390 2.345 H13 6T8 50
6T8 H14 H14 H 0 1 N N N N N N 82.433 56.459 145.590 7.105 1.595 3.045 H14 6T8 51
6T8 H15 H15 H 0 1 N N N N N N 83.455 55.704 146.615 7.848 2.936 3.688 H15 6T8 52
6T8 H17 H17 H 0 1 N N N N N N 83.107 54.081 148.157 4.092 4.042 2.601 H17 6T8 53
6T8 H18 H18 H 0 1 N N N N N N 83.062 52.948 150.362 2.036 3.113 1.614 H18 6T8 54
6T8 H19 H19 H 0 1 N N N N N N 83.978 51.400 154.578 -1.080 0.903 0.974 H19 6T8 55
6T8 H20 H20 H 0 1 N N N N N N 82.315 51.998 156.977 -2.276 -1.369 -0.505 H20 6T8 56
6T8 H21 H21 H 0 1 N N N N N N 84.685 50.285 156.453 -3.082 -1.030 1.815 H21 6T8 57
6T8 H22 H22 H 0 1 N N N N N N 84.786 51.259 157.959 -3.546 0.640 1.410 H22 6T8 58
6T8 H23 H23 H 0 1 N N N N N N 82.219 50.353 158.125 -5.111 -0.212 -0.313 H23 6T8 59
6T8 H24 H24 H 0 1 N N N N N N 83.634 49.514 158.846 -4.647 -1.882 0.091 H24 6T8 60
6T8 H25 H25 H 0 1 N N N N N N 83.670 47.879 157.224 -5.453 -1.543 2.412 H25 6T8 61
6T8 H26 H26 H 0 1 N N N N N N 82.984 48.961 155.964 -5.917 0.127 2.007 H26 6T8 62
6T8 H27 H27 H 0 1 N N N N N N 80.817 48.729 157.138 -7.169 -1.614 0.169 H27 6T8 63
6T8 H28 H28 H 0 1 N N N N N N 81.975 45.053 158.278 -7.191 -0.788 3.606 H28 6T8 64
6T8 H29 H29 H 0 1 N N N N N N 83.213 46.241 158.039 -8.806 -1.175 3.859 H29 6T8 65
6T8 H30 H30 H 0 1 N N N N N N 79.972 45.589 157.933 -10.073 -1.957 2.080 H30 6T8 66
6T8 H31 H31 H 0 1 N N N N N N 84.208 56.367 156.519 -5.006 3.132 -1.495 H31 6T8 67
6T8 H32 H32 H 0 1 N N N N N N 82.751 56.010 155.531 -3.419 3.170 -0.685 H32 6T8 68
6T8 H33 H33 H 0 1 N N N N N N 84.419 55.722 158.678 -1.328 2.653 -2.016 H33 6T8 69
6T8 H34 H34 H 0 1 N N N N N N 83.094 54.922 159.589 -1.465 2.256 -3.746 H34 6T8 70
6T8 H35 H35 H 0 1 N N N N N N 82.142 56.405 157.882 -3.931 2.371 -3.588 H35 6T8 71
6T8 H36 H36 H 0 1 N N N N N N 81.101 54.316 158.116 -2.740 4.409 -3.957 H36 6T8 72
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6T8 N38 C37 SING N N 1
6T8 C37 C34 SING N N 2
6T8 C34 C33 DOUB Y N 3
6T8 C34 C35 SING Y N 4
6T8 C33 C32 SING Y N 5
6T8 C35 C36 DOUB Y N 6
6T8 C32 C31 DOUB Y N 7
6T8 C36 C31 SING Y N 8
6T8 C31 C20 SING N N 9
6T8 C29 C30 DOUB Y N 10
6T8 C29 C28 SING Y N 11
6T8 C30 C25 SING Y N 12
6T8 C28 C27 DOUB Y N 13
6T8 C25 C22 SING N N 14
6T8 C25 C26 DOUB Y N 15
6T8 C27 C26 SING Y N 16
6T8 C22 O24 DOUB N N 17
6T8 C22 N21 SING N N 18
6T8 N21 C18 SING N N 19
6T8 C20 C18 SING N N 20
6T8 C18 C17 SING N N 21
6T8 C17 O19 DOUB N N 22
6T8 C17 N2 SING N N 23
6T8 N2 C1 SING N N 24
6T8 O3 C2 SING N N 25
6T8 O3 B4 SING N N 26
6T8 C2 C5 SING N N 27
6T8 C1 B4 SING N N 28
6T8 C1 C3 SING N N 29
6T8 B4 O1 SING N N 30
6T8 C12 N13 SING N N 31
6T8 C12 C11 SING N N 32
6T8 C3 C11 SING N N 33
6T8 N13 C14 SING N N 34
6T8 O2 C5 SING N N 35
6T8 C5 C4 SING N N 36
6T8 N16 C14 DOUB N N 37
6T8 C14 N15 SING N N 38
6T8 O1 C4 SING N N 39
6T8 C30 H1 SING N N 40
6T8 C29 H2 SING N N 41
6T8 C28 H3 SING N N 42
6T8 C27 H4 SING N N 43
6T8 C26 H5 SING N N 44
6T8 N21 H6 SING N N 45
6T8 C18 H7 SING N N 46
6T8 C20 H8 SING N N 47
6T8 C20 H9 SING N N 48
6T8 C36 H10 SING N N 49
6T8 C35 H11 SING N N 50
6T8 C37 H12 SING N N 51
6T8 C37 H13 SING N N 52
6T8 N38 H14 SING N N 53
6T8 N38 H15 SING N N 54
6T8 C33 H17 SING N N 55
6T8 C32 H18 SING N N 56
6T8 N2 H19 SING N N 57
6T8 C1 H20 SING N N 58
6T8 C3 H21 SING N N 59
6T8 C3 H22 SING N N 60
6T8 C11 H23 SING N N 61
6T8 C11 H24 SING N N 62
6T8 C12 H25 SING N N 63
6T8 C12 H26 SING N N 64
6T8 N13 H27 SING N N 65
6T8 N15 H28 SING N N 66
6T8 N15 H29 SING N N 67
6T8 N16 H30 SING N N 68
6T8 C2 H31 SING N N 69
6T8 C2 H32 SING N N 70
6T8 C4 H33 SING N N 71
6T8 C4 H34 SING N N 72
6T8 C5 H35 SING N N 73
6T8 O2 H36 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6T8 InChI InChI 1.03 'InChI=1S/C25H35BN6O5/c27-14-18-10-8-17(9-11-18)13-21(31-23(34)19-5-2-1-3-6-19)24(35)32-22(7-4-12-30-25(28)29)26-36-15-20(33)16-37-26/h1-3,5-6,8-11,20-22,33H,4,7,12-16,27H2,(H,31,34)(H,32,35)(H4,28,29,30)/t21-,22-/m0/s1'
6T8 InChIKey InChI 1.03 DYKCMHQIYUDANF-VXKWHMMOSA-N
6T8 SMILES_CANONICAL CACTVS 3.385 'NCc1ccc(C[C@H](NC(=O)c2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)B3OCC(O)CO3)cc1'
6T8 SMILES CACTVS 3.385 'NCc1ccc(C[CH](NC(=O)c2ccccc2)C(=O)N[CH](CCCNC(N)=N)B3OCC(O)CO3)cc1'
6T8 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.5 '[H]/N=C(/N)\NCCC[C@@H](B1OCC(CO1)O)NC(=O)[C@H](Cc2ccc(cc2)CN)NC(=O)c3ccccc3'
6T8 SMILES 'OpenEye OEToolkits' 2.0.5 'B1(OCC(CO1)O)C(CCCNC(=N)N)NC(=O)C(Cc2ccc(cc2)CN)NC(=O)c3ccccc3'
#
_pdbx_chem_comp_identifier.comp_id 6T8
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
'~{N}-[(2~{S})-3-[4-(aminomethyl)phenyl]-1-[[(1~{R})-4-carbamimidamido-1-(5-oxidanyl-1,3,2-dioxaborinan-2-yl)butyl]amino]-1-oxidanylidene-propan-2-yl]benzamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6T8 'Create component' 2016-06-20 EBI
6T8 'Initial release' 2016-07-06 RCSB
6T8 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 6T8
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom B4
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 5LC0
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6T8 O24 O 14.198 -2.857 1
6T8 C22 C 12.899 -3.607 2
6T8 C25 C 12.899 -5.107 3
6T8 C30 C 11.600 -5.857 4
6T8 C29 C 11.600 -7.357 5
6T8 C28 C 12.899 -8.107 6
6T8 C27 C 14.198 -7.357 7
6T8 C26 C 14.198 -5.857 8
6T8 N21 N 11.600 -2.857 9
6T8 C18 C 11.600 -1.357 10
6T8 C20 C 10.301 -0.608 11
6T8 C31 C 9.002 -1.357 12
6T8 C36 C 7.702 -0.608 13
6T8 C35 C 6.404 -1.357 14
6T8 C34 C 6.404 -2.857 15
6T8 C37 C 5.104 -3.607 16
6T8 N38 N 3.805 -2.857 17
6T8 C33 C 7.702 -3.607 18
6T8 C32 C 9.002 -2.857 19
6T8 C17 C 12.899 -0.608 20
6T8 O19 O 14.198 -1.357 21
6T8 N2 N 12.899 0.892 22
6T8 C1 C 14.198 1.643 23
6T8 B4 B 14.198 3.143 24
6T8 O1 O 12.899 3.893 25
6T8 O3 O 15.497 3.893 26
6T8 C3 C 15.497 0.892 27
6T8 C11 C 15.497 -0.608 28
6T8 C12 C 16.796 -1.357 29
6T8 N13 N 16.796 -2.857 30
6T8 C14 C 18.095 -3.607 31
6T8 N15 N 18.095 -5.107 32
6T8 N16 N 19.394 -2.857 33
6T8 C2 C 15.497 5.393 34
6T8 C4 C 12.899 5.393 35
6T8 C5 C 14.198 6.143 36
6T8 O2 O 14.198 7.643 37
6T8 H30 H 19.394 -1.358 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6T8 N38 C37 SINGLE NONE 1
6T8 C37 C34 SINGLE NONE 2
6T8 C34 C33 DOUBLE NONE 3
6T8 C34 C35 SINGLE NONE 4
6T8 C33 C32 SINGLE NONE 5
6T8 C35 C36 DOUBLE NONE 6
6T8 C32 C31 DOUBLE NONE 7
6T8 C36 C31 SINGLE NONE 8
6T8 C31 C20 SINGLE NONE 9
6T8 C29 C30 DOUBLE NONE 10
6T8 C29 C28 SINGLE NONE 11
6T8 C30 C25 SINGLE NONE 12
6T8 C28 C27 DOUBLE NONE 13
6T8 C25 C22 SINGLE NONE 14
6T8 C25 C26 DOUBLE NONE 15
6T8 C27 C26 SINGLE NONE 16
6T8 C22 O24 DOUBLE NONE 17
6T8 C22 N21 SINGLE NONE 18
6T8 N21 C18 SINGLE NONE 19
6T8 C18 C20 SINGLE BEGINWEDGE 20
6T8 C18 C17 SINGLE NONE 21
6T8 C17 O19 DOUBLE NONE 22
6T8 C17 N2 SINGLE NONE 23
6T8 N2 C1 SINGLE NONE 24
6T8 O3 C2 SINGLE NONE 25
6T8 O3 B4 SINGLE NONE 26
6T8 C2 C5 SINGLE NONE 27
6T8 C1 B4 SINGLE NONE 28
6T8 C1 C3 SINGLE BEGINDASH 29
6T8 B4 O1 SINGLE NONE 30
6T8 C12 N13 SINGLE NONE 31
6T8 C12 C11 SINGLE NONE 32
6T8 C3 C11 SINGLE NONE 33
6T8 N13 C14 SINGLE ENDDOWNRIGHT 34
6T8 O2 C5 SINGLE NONE 35
6T8 C5 C4 SINGLE NONE 36
6T8 N16 C14 DOUBLE NONE 37
6T8 C14 N15 SINGLE ENDDOWNRIGHT 38
6T8 O1 C4 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6T8 MurckoScaffold S1 scaffold 'O=C(N[C@@H](Cc1ccccc1)C(=O)NCB1OCCCO1)c1ccccc1' InChI=1S/C20H23BN2O4/c24-19(17-10-5-2-6-11-17)23-18(14-16-8-3-1-4-9-16)20(25)22-15-21-26-12-7-13-27-21/h1-6,8-11,18H,7,12-15H2,(H,22,25)(H,23,24)/t18-/m0/s1 UTESLNDSLRFBJG-SFHVURJKSA-N
6T8 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6T8 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
6T8 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6T8 O24 S1 1
6T8 C22 S1 1
6T8 C25 S1 1
6T8 C30 S1 1
6T8 C29 S1 1
6T8 C28 S1 1
6T8 C27 S1 1
6T8 C26 S1 1
6T8 N21 S1 1
6T8 C18 S1 1
6T8 C20 S1 1
6T8 C31 S1 1
6T8 C36 S1 1
6T8 C35 S1 1
6T8 C34 S1 1
6T8 C33 S1 1
6T8 C32 S1 1
6T8 C17 S1 1
6T8 O19 S1 1
6T8 N2 S1 1
6T8 C1 S1 1
6T8 B4 S1 1
6T8 O1 S1 1
6T8 O3 S1 1
6T8 C2 S1 1
6T8 C4 S1 1
6T8 C5 S1 1
6T8 N21 F1 1
6T8 C22 F1 1
6T8 O24 F1 1
6T8 C25 F1 1
6T8 N2 F1 2
6T8 C17 F1 2
6T8 O19 F1 2
6T8 C18 F1 2
6T8 O19 F2 1
6T8 C17 F2 1
6T8 C18 F2 1
6T8 N21 F2 1
6T8 C25 F3 1
6T8 C30 F3 1
6T8 C29 F3 1
6T8 C28 F3 1
6T8 C27 F3 1
6T8 C26 F3 1
6T8 C31 F3 2
6T8 C32 F3 2
6T8 C33 F3 2
6T8 C34 F3 2
6T8 C35 F3 2
6T8 C36 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 6T8
_pdbe_chem_comp_rdkit_properties.exactmw 510.276
_pdbe_chem_comp_rdkit_properties.amw 510.404
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 72
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 266.204
_pdbe_chem_comp_rdkit_properties.tpsa 184.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.495
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.682
_pdbe_chem_comp_rdkit_properties.chi0v 17.802
_pdbe_chem_comp_rdkit_properties.chi1v 9.293
_pdbe_chem_comp_rdkit_properties.chi2v 3.475
_pdbe_chem_comp_rdkit_properties.chi3v 3.475
_pdbe_chem_comp_rdkit_properties.chi4v 2.035
_pdbe_chem_comp_rdkit_properties.chi0n 52.802
_pdbe_chem_comp_rdkit_properties.chi1n 26.279
_pdbe_chem_comp_rdkit_properties.chi2n 3.475
_pdbe_chem_comp_rdkit_properties.chi3n 3.475
_pdbe_chem_comp_rdkit_properties.chi4n 2.035
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.445
_pdbe_chem_comp_rdkit_properties.kappa1 7.144
_pdbe_chem_comp_rdkit_properties.kappa2 14.334
_pdbe_chem_comp_rdkit_properties.kappa3 9.175
_pdbe_chem_comp_rdkit_properties.Phi 2.768
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6T8 UniChem PDBe 6T8
6T8 UniChem ZINC ZINC000584904967
6T8 UniChem PubChem 137348520
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6T8 O24 -1.476 -2.702 0.339 ETKDGv3 1
6T8 C22 -2.229 -2.024 -0.413 ETKDGv3 2
6T8 C25 -3.546 -2.568 -0.817 ETKDGv3 3
6T8 C30 -4.646 -1.649 -1.221 ETKDGv3 4
6T8 C29 -5.848 -2.137 -1.552 ETKDGv3 5
6T8 C28 -6.091 -3.592 -1.523 ETKDGv3 6
6T8 C27 -5.112 -4.426 -1.155 ETKDGv3 7
6T8 C26 -3.785 -3.893 -0.779 ETKDGv3 8
6T8 N21 -1.815 -0.718 -0.849 ETKDGv3 9
6T8 C18 -0.932 0.167 -0.073 ETKDGv3 10
6T8 C20 -1.399 0.303 1.394 ETKDGv3 11
6T8 C31 -2.876 0.603 1.486 ETKDGv3 12
6T8 C36 -3.403 1.887 0.963 ETKDGv3 13
6T8 C35 -4.720 2.122 0.953 ETKDGv3 14
6T8 C34 -5.666 1.109 1.480 ETKDGv3 15
6T8 C37 -7.147 1.347 1.394 ETKDGv3 16
6T8 N38 -7.687 0.692 0.207 ETKDGv3 17
6T8 C33 -5.188 -0.049 1.966 ETKDGv3 18
6T8 C32 -3.735 -0.309 1.976 ETKDGv3 19
6T8 C17 0.509 -0.275 -0.151 ETKDGv3 20
6T8 O19 0.808 -1.394 -0.653 ETKDGv3 21
6T8 N2 1.544 0.590 0.339 ETKDGv3 22
6T8 C1 2.964 0.232 0.265 ETKDGv3 23
6T8 B4 3.790 0.972 1.431 ETKDGv3 24
6T8 O1 3.227 0.939 2.799 ETKDGv3 25
6T8 O3 5.260 1.032 1.314 ETKDGv3 26
6T8 C3 3.528 0.519 -1.142 ETKDGv3 27
6T8 C11 3.381 1.990 -1.574 ETKDGv3 28
6T8 C12 3.921 2.228 -2.989 ETKDGv3 29
6T8 N13 5.375 2.068 -3.025 ETKDGv3 30
6T8 C14 6.034 0.906 -3.552 ETKDGv3 31
6T8 N15 7.458 0.808 -3.478 ETKDGv3 32
6T8 N16 5.346 -0.053 -4.088 ETKDGv3 33
6T8 C2 5.784 -0.158 1.874 ETKDGv3 34
6T8 C4 4.239 0.649 3.753 ETKDGv3 35
6T8 C5 5.257 -0.439 3.313 ETKDGv3 36
6T8 O2 4.685 -1.720 3.397 ETKDGv3 37
6T8 H1 -4.499 -0.577 -1.221 ETKDGv3 38
6T8 H2 -6.648 -1.464 -1.833 ETKDGv3 39
6T8 H3 -7.063 -3.982 -1.796 ETKDGv3 40
6T8 H4 -5.289 -5.493 -1.129 ETKDGv3 41
6T8 H5 -3.013 -4.591 -0.480 ETKDGv3 42
6T8 H6 -2.241 -0.325 -1.718 ETKDGv3 43
6T8 H7 -0.976 1.178 -0.535 ETKDGv3 44
6T8 H8 -1.147 -0.621 1.959 ETKDGv3 45
6T8 H9 -0.844 1.134 1.881 ETKDGv3 46
6T8 H10 -2.723 2.634 0.574 ETKDGv3 47
6T8 H11 -5.093 3.057 0.553 ETKDGv3 48
6T8 H12 -7.647 0.941 2.301 ETKDGv3 49
6T8 H13 -7.361 2.439 1.355 ETKDGv3 50
6T8 H14 -8.723 0.833 0.209 ETKDGv3 51
6T8 H15 -7.320 1.189 -0.637 ETKDGv3 52
6T8 H17 -5.862 -0.814 2.331 ETKDGv3 53
6T8 H18 -3.380 -1.263 2.348 ETKDGv3 54
6T8 H19 1.274 1.544 0.673 ETKDGv3 55
6T8 H20 3.074 -0.856 0.465 ETKDGv3 56
6T8 H21 2.994 -0.125 -1.874 ETKDGv3 57
6T8 H22 4.598 0.223 -1.169 ETKDGv3 58
6T8 H23 3.918 2.656 -0.865 ETKDGv3 59
6T8 H24 2.307 2.273 -1.564 ETKDGv3 60
6T8 H25 3.419 1.550 -3.712 ETKDGv3 61
6T8 H26 3.673 3.267 -3.293 ETKDGv3 62
6T8 H27 5.957 2.802 -2.561 ETKDGv3 63
6T8 H28 7.959 -0.029 -3.852 ETKDGv3 64
6T8 H29 8.019 1.575 -3.045 ETKDGv3 65
6T8 H30 5.804 -0.909 -4.475 ETKDGv3 66
6T8 H31 5.588 -1.020 1.195 ETKDGv3 67
6T8 H32 6.890 -0.054 1.915 ETKDGv3 68
6T8 H33 4.789 1.587 3.990 ETKDGv3 69
6T8 H34 3.752 0.323 4.696 ETKDGv3 70
6T8 H35 6.114 -0.407 4.021 ETKDGv3 71
6T8 H36 3.889 -1.732 2.803 ETKDGv3 72
#