data_6W4
#
_chem_comp.id 6W4
_chem_comp.name
(2~{S},4~{S})-1-[4-(aminomethyl)phenyl]carbonyl-4-(4-cyclopropyl-1,2,3-triazol-1-yl)-~{N}-(2,2-diphenylethyl)pyrrolidine-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H34 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-07-08
_chem_comp.pdbx_modified_date 2018-01-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 534.651
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6W4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LH4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6W4 N1 N1 N 0 1 Y N N N N N 25.100 10.292 20.229 2.305 2.888 0.913 N1 6W4 1
6W4 N3 N2 N 0 1 Y N N N N N 24.116 8.922 18.819 2.794 4.918 0.605 N3 6W4 2
6W4 C4 C1 C 0 1 Y N N N N N 23.616 8.735 20.137 2.956 4.315 -0.578 C4 6W4 3
6W4 C5 C2 C 0 1 Y N N N N N 24.240 9.594 20.955 2.646 3.011 -0.391 C5 6W4 4
6W4 C7 C3 C 0 1 N N N N N N 22.544 7.703 20.404 3.396 4.961 -1.866 C7 6W4 5
6W4 C15 C4 C 0 1 N N S N N N 26.030 11.309 20.662 1.892 1.650 1.579 C15 6W4 6
6W4 C17 C5 C 0 1 N N N N N N 27.191 11.567 19.676 2.504 0.412 0.879 C17 6W4 7
6W4 C21 C6 C 0 1 N N S N N N 27.990 11.871 21.933 0.262 -0.139 1.506 C21 6W4 8
6W4 C26 C7 C 0 1 N N N N N N 29.217 11.179 22.461 -0.751 -0.656 0.518 C26 6W4 9
6W4 N2 N3 N 0 1 Y N N N N N 25.015 9.902 18.950 2.410 4.044 1.468 N2 6W4 10
6W4 C9 C8 C 0 1 N N N N N N 22.876 6.620 21.456 4.884 4.898 -2.216 C9 6W4 11
6W4 C12 C9 C 0 1 N N N N N N 21.776 7.666 21.742 3.879 4.041 -2.989 C12 6W4 12
6W4 N20 N4 N 0 1 N N N N N N 28.087 12.290 20.562 1.588 -0.697 1.202 N20 6W4 13
6W4 C23 C10 C 0 1 N N N N N N 26.825 10.857 21.898 0.373 1.396 1.389 C23 6W4 14
6W4 O27 O1 O 0 1 N N N N N N 29.721 10.213 21.890 -0.382 -1.135 -0.534 O27 6W4 15
6W4 N28 N5 N 0 1 N N N N N N 29.653 11.693 23.623 -2.066 -0.587 0.803 N28 6W4 16
6W4 C30 C11 C 0 1 N N N N N N 30.679 11.041 24.433 -3.051 -1.090 -0.159 C30 6W4 17
6W4 C33 C12 C 0 1 N N N N N N 29.962 10.929 25.816 -4.460 -0.894 0.405 C33 6W4 18
6W4 C35 C13 C 0 1 Y N N N N N 28.565 10.273 25.746 -4.748 0.579 0.536 C35 6W4 19
6W4 C36 C14 C 0 1 Y N N N N N 28.286 9.107 25.018 -5.181 1.094 1.744 C36 6W4 20
6W4 C38 C15 C 0 1 Y N N N N N 26.972 8.626 24.904 -5.445 2.445 1.864 C38 6W4 21
6W4 C40 C16 C 0 1 Y N N N N N 25.940 9.295 25.581 -5.276 3.282 0.777 C40 6W4 22
6W4 C42 C17 C 0 1 Y N N N N N 26.195 10.473 26.279 -4.842 2.768 -0.431 C42 6W4 23
6W4 C44 C18 C 0 1 Y N N N N N 27.498 10.958 26.345 -4.573 1.417 -0.550 C44 6W4 24
6W4 C46 C19 C 0 1 Y N N N N N 30.840 10.295 26.908 -5.465 -1.521 -0.526 C46 6W4 25
6W4 C47 C20 C 0 1 Y N N N N N 31.857 11.064 27.485 -5.448 -1.210 -1.873 C47 6W4 26
6W4 C49 C21 C 0 1 Y N N N N N 32.681 10.528 28.489 -6.371 -1.785 -2.727 C49 6W4 27
6W4 C51 C22 C 0 1 Y N N N N N 32.433 9.232 28.951 -7.309 -2.673 -2.234 C51 6W4 28
6W4 C53 C23 C 0 1 Y N N N N N 31.395 8.465 28.406 -7.326 -2.985 -0.888 C53 6W4 29
6W4 C55 C24 C 0 1 Y N N N N N 30.597 8.998 27.383 -6.400 -2.413 -0.035 C55 6W4 30
6W4 C57 C25 C 0 1 N N N N N N 28.842 13.387 20.291 1.912 -2.005 1.216 C57 6W4 31
6W4 O58 O2 O 0 1 N N N N N N 29.432 14.004 21.181 1.110 -2.825 1.620 O58 6W4 32
6W4 C59 C26 C 0 1 Y N N N N N 28.945 13.959 18.896 3.241 -2.443 0.741 C59 6W4 33
6W4 C60 C27 C 0 1 Y N N N N N 29.089 13.090 17.792 3.736 -3.698 1.099 C60 6W4 34
6W4 C62 C28 C 0 1 Y N N N N N 29.188 13.616 16.493 4.977 -4.100 0.652 C62 6W4 35
6W4 C64 C29 C 0 1 Y N N N N N 29.110 15.003 16.305 5.732 -3.263 -0.150 C64 6W4 36
6W4 C65 C30 C 0 1 Y N N N N N 28.959 15.875 17.397 5.248 -2.017 -0.508 C65 6W4 37
6W4 C67 C31 C 0 1 Y N N N N N 28.908 15.341 18.702 4.006 -1.605 -0.072 C67 6W4 38
6W4 C69 C32 C 0 1 N N N N N N 29.167 15.567 14.882 7.088 -3.708 -0.634 C69 6W4 39
6W4 N72 N6 N 0 1 N N N N N N 30.522 15.489 14.339 6.944 -4.405 -1.919 N72 6W4 40
6W4 H1 H1 H 0 1 N N N N N N 24.072 9.698 22.017 2.668 2.226 -1.132 H1 6W4 41
6W4 H2 H2 H 0 1 N N N N N N 21.982 7.352 19.526 2.850 5.860 -2.152 H2 6W4 42
6W4 H3 H3 H 0 1 N N N N N N 25.511 12.254 20.879 2.155 1.672 2.637 H3 6W4 43
6W4 H4 H4 H 0 1 N N N N N N 26.875 12.180 18.819 2.546 0.567 -0.199 H4 6W4 44
6W4 H5 H5 H 0 1 N N N N N N 27.638 10.630 19.312 3.500 0.208 1.272 H5 6W4 45
6W4 H6 H6 H 0 1 N N N N N N 27.723 12.715 22.586 -0.033 -0.415 2.519 H6 6W4 46
6W4 H7 H7 H 0 1 N N N N N N 22.603 5.571 21.271 5.317 5.754 -2.732 H7 6W4 47
6W4 H8 H8 H 0 1 N N N N N N 23.829 6.659 22.004 5.545 4.388 -1.514 H8 6W4 48
6W4 H9 H9 H 0 1 N N N N N N 21.945 8.450 22.495 3.879 2.968 -2.796 H9 6W4 49
6W4 H10 H10 H 0 1 N N N N N N 20.719 7.361 21.761 3.651 4.335 -4.014 H10 6W4 50
6W4 H11 H11 H 0 1 N N N N N N 26.213 10.922 22.810 -0.201 1.886 2.176 H11 6W4 51
6W4 H12 H12 H 0 1 N N N N N N 27.196 9.829 21.778 0.046 1.732 0.405 H12 6W4 52
6W4 H13 H13 H 0 1 N N N N N N 29.260 12.554 23.946 -2.361 -0.204 1.643 H13 6W4 53
6W4 H14 H14 H 0 1 N N N N N N 30.936 10.049 24.033 -2.955 -0.544 -1.097 H14 6W4 54
6W4 H15 H15 H 0 1 N N N N N N 31.588 11.656 24.501 -2.875 -2.151 -0.337 H15 6W4 55
6W4 H16 H16 H 0 1 N N N N N N 29.787 11.966 26.140 -4.528 -1.367 1.385 H16 6W4 56
6W4 H17 H17 H 0 1 N N N N N N 29.093 8.572 24.539 -5.313 0.440 2.593 H17 6W4 57
6W4 H18 H18 H 0 1 N N N N N N 26.758 7.754 24.304 -5.785 2.848 2.807 H18 6W4 58
6W4 H19 H19 H 0 1 N N N N N N 24.938 8.892 25.560 -5.484 4.338 0.870 H19 6W4 59
6W4 H20 H20 H 0 1 N N N N N N 25.390 11.005 26.764 -4.710 3.421 -1.280 H20 6W4 60
6W4 H21 H21 H 0 1 N N N N N N 27.692 11.882 26.869 -4.231 1.015 -1.492 H21 6W4 61
6W4 H22 H22 H 0 1 N N N N N N 32.010 12.081 27.155 -4.715 -0.516 -2.258 H22 6W4 62
6W4 H23 H23 H 0 1 N N N N N N 33.494 11.109 28.898 -6.358 -1.541 -3.779 H23 6W4 63
6W4 H24 H24 H 0 1 N N N N N N 33.048 8.818 29.736 -8.030 -3.122 -2.902 H24 6W4 64
6W4 H25 H25 H 0 1 N N N N N N 31.210 7.466 28.773 -8.059 -3.678 -0.503 H25 6W4 65
6W4 H26 H26 H 0 1 N N N N N N 29.796 8.410 26.961 -6.411 -2.660 1.017 H26 6W4 66
6W4 H27 H27 H 0 1 N N N N N N 29.123 12.022 17.946 3.148 -4.352 1.725 H27 6W4 67
6W4 H28 H28 H 0 1 N N N N N N 29.323 12.958 15.647 5.360 -5.071 0.928 H28 6W4 68
6W4 H29 H29 H 0 1 N N N N N N 28.883 16.941 17.239 5.842 -1.368 -1.134 H29 6W4 69
6W4 H30 H30 H 0 1 N N N N N N 28.840 16.003 19.553 3.629 -0.632 -0.353 H30 6W4 70
6W4 H31 H31 H 0 1 N N N N N N 28.847 16.619 14.900 7.732 -2.839 -0.762 H31 6W4 71
6W4 H32 H32 H 0 1 N N N N N N 28.488 14.988 14.239 7.531 -4.384 0.098 H32 6W4 72
6W4 H33 H33 H 0 1 N N N N N N 30.532 15.863 13.411 6.476 -3.822 -2.596 H33 6W4 73
6W4 H34 H34 H 0 1 N N N N N N 31.144 16.017 14.918 7.840 -4.715 -2.265 H34 6W4 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6W4 N72 C69 SING N N 1
6W4 C69 C64 SING N N 2
6W4 C64 C62 DOUB Y N 3
6W4 C64 C65 SING Y N 4
6W4 C62 C60 SING Y N 5
6W4 C65 C67 DOUB Y N 6
6W4 C60 C59 DOUB Y N 7
6W4 C67 C59 SING Y N 8
6W4 N3 N2 DOUB Y N 9
6W4 N3 C4 SING Y N 10
6W4 C59 C57 SING N N 11
6W4 N2 N1 SING Y N 12
6W4 C17 N20 SING N N 13
6W4 C17 C15 SING N N 14
6W4 C4 C7 SING N N 15
6W4 C4 C5 DOUB Y N 16
6W4 N1 C15 SING N N 17
6W4 N1 C5 SING Y N 18
6W4 C57 N20 SING N N 19
6W4 C57 O58 DOUB N N 20
6W4 C7 C9 SING N N 21
6W4 C7 C12 SING N N 22
6W4 N20 C21 SING N N 23
6W4 C15 C23 SING N N 24
6W4 C9 C12 SING N N 25
6W4 O27 C26 DOUB N N 26
6W4 C23 C21 SING N N 27
6W4 C21 C26 SING N N 28
6W4 C26 N28 SING N N 29
6W4 N28 C30 SING N N 30
6W4 C30 C33 SING N N 31
6W4 C38 C36 DOUB Y N 32
6W4 C38 C40 SING Y N 33
6W4 C36 C35 SING Y N 34
6W4 C40 C42 DOUB Y N 35
6W4 C35 C33 SING N N 36
6W4 C35 C44 DOUB Y N 37
6W4 C33 C46 SING N N 38
6W4 C42 C44 SING Y N 39
6W4 C46 C55 DOUB Y N 40
6W4 C46 C47 SING Y N 41
6W4 C55 C53 SING Y N 42
6W4 C47 C49 DOUB Y N 43
6W4 C53 C51 DOUB Y N 44
6W4 C49 C51 SING Y N 45
6W4 C5 H1 SING N N 46
6W4 C7 H2 SING N N 47
6W4 C15 H3 SING N N 48
6W4 C17 H4 SING N N 49
6W4 C17 H5 SING N N 50
6W4 C21 H6 SING N N 51
6W4 C9 H7 SING N N 52
6W4 C9 H8 SING N N 53
6W4 C12 H9 SING N N 54
6W4 C12 H10 SING N N 55
6W4 C23 H11 SING N N 56
6W4 C23 H12 SING N N 57
6W4 N28 H13 SING N N 58
6W4 C30 H14 SING N N 59
6W4 C30 H15 SING N N 60
6W4 C33 H16 SING N N 61
6W4 C36 H17 SING N N 62
6W4 C38 H18 SING N N 63
6W4 C40 H19 SING N N 64
6W4 C42 H20 SING N N 65
6W4 C44 H21 SING N N 66
6W4 C47 H22 SING N N 67
6W4 C49 H23 SING N N 68
6W4 C51 H24 SING N N 69
6W4 C53 H25 SING N N 70
6W4 C55 H26 SING N N 71
6W4 C60 H27 SING N N 72
6W4 C62 H28 SING N N 73
6W4 C65 H29 SING N N 74
6W4 C67 H30 SING N N 75
6W4 C69 H31 SING N N 76
6W4 C69 H32 SING N N 77
6W4 N72 H33 SING N N 78
6W4 N72 H34 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6W4 InChI InChI 1.03 InChI=1S/C32H34N6O2/c33-18-22-11-13-26(14-12-22)32(40)37-20-27(38-21-29(35-36-38)25-15-16-25)17-30(37)31(39)34-19-28(23-7-3-1-4-8-23)24-9-5-2-6-10-24/h1-14,21,25,27-28,30H,15-20,33H2,(H,34,39)/t27-,30-/m0/s1
6W4 InChIKey InChI 1.03 YBZBHUMSHGXQNF-FIBWVYCGSA-N
6W4 SMILES_CANONICAL CACTVS 3.385 NCc1ccc(cc1)C(=O)N2C[C@H](C[C@H]2C(=O)NCC(c3ccccc3)c4ccccc4)n5cc(nn5)C6CC6
6W4 SMILES CACTVS 3.385 NCc1ccc(cc1)C(=O)N2C[CH](C[CH]2C(=O)NCC(c3ccccc3)c4ccccc4)n5cc(nn5)C6CC6
6W4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 c1ccc(cc1)C(CNC(=O)[C@@H]2C[C@@H](CN2C(=O)c3ccc(cc3)CN)n4cc(nn4)C5CC5)c6ccccc6
6W4 SMILES "OpenEye OEToolkits" 2.0.5 c1ccc(cc1)C(CNC(=O)C2CC(CN2C(=O)c3ccc(cc3)CN)n4cc(nn4)C5CC5)c6ccccc6
#
_pdbx_chem_comp_identifier.comp_id 6W4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
(2~{S},4~{S})-1-[4-(aminomethyl)phenyl]carbonyl-4-(4-cyclopropyl-1,2,3-triazol-1-yl)-~{N}-(2,2-diphenylethyl)pyrrolidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6W4 'Create component' 2016-07-08 EBI
6W4 'Initial release' 2018-01-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6W4 N1 N 11.971 -0.391 1
6W4 N3 N 14.188 -1.379 2
6W4 C4 C 14.345 0.113 3
6W4 C5 C 12.974 0.724 4
6W4 C7 C 15.644 0.863 5
6W4 C15 C 10.479 -0.234 6
6W4 C17 C 9.475 -1.349 7
6W4 C21 C 8.262 0.753 8
6W4 C26 C 7.147 1.756 9
6W4 N2 N 12.721 -1.690 10
6W4 C9 C 16.394 2.162 11
6W4 C12 C 17.144 0.863 12
6W4 N20 N 8.105 -0.739 13
6W4 C23 C 9.729 1.065 14
6W4 O27 O 5.720 1.293 15
6W4 N28 N 7.459 3.224 16
6W4 C30 C 6.344 4.227 17
6W4 C33 C 6.656 5.694 18
6W4 C35 C 5.541 6.698 19
6W4 C36 C 4.115 6.235 20
6W4 C38 C 3.000 7.238 21
6W4 C40 C 3.312 8.706 22
6W4 C42 C 4.739 9.169 23
6W4 C44 C 5.853 8.165 24
6W4 C46 C 8.083 6.158 25
6W4 C47 C 9.197 5.154 26
6W4 C49 C 10.624 5.618 27
6W4 C51 C 10.936 7.085 28
6W4 C53 C 9.821 8.089 29
6W4 C55 C 8.395 7.625 30
6W4 C57 C 6.806 -1.489 31
6W4 O58 O 5.507 -0.739 32
6W4 C59 C 6.806 -2.989 33
6W4 C60 C 5.507 -3.739 34
6W4 C62 C 5.507 -5.239 35
6W4 C64 C 6.806 -5.989 36
6W4 C65 C 8.105 -5.239 37
6W4 C67 C 8.105 -3.739 38
6W4 C69 C 6.806 -7.489 39
6W4 N72 N 5.507 -8.239 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6W4 N72 C69 SINGLE NONE 1
6W4 C69 C64 SINGLE NONE 2
6W4 C64 C62 SINGLE NONE 3
6W4 C64 C65 DOUBLE NONE 4
6W4 C62 C60 DOUBLE NONE 5
6W4 C65 C67 SINGLE NONE 6
6W4 C60 C59 SINGLE NONE 7
6W4 C67 C59 DOUBLE NONE 8
6W4 N3 N2 DOUBLE NONE 9
6W4 N3 C4 SINGLE NONE 10
6W4 C59 C57 SINGLE NONE 11
6W4 N2 N1 SINGLE NONE 12
6W4 C17 N20 SINGLE NONE 13
6W4 C17 C15 SINGLE NONE 14
6W4 C4 C7 SINGLE NONE 15
6W4 C4 C5 DOUBLE NONE 16
6W4 C15 N1 SINGLE BEGINDASH 17
6W4 N1 C5 SINGLE NONE 18
6W4 C57 N20 SINGLE NONE 19
6W4 C57 O58 DOUBLE NONE 20
6W4 C7 C9 SINGLE NONE 21
6W4 C7 C12 SINGLE NONE 22
6W4 N20 C21 SINGLE NONE 23
6W4 C15 C23 SINGLE NONE 24
6W4 C9 C12 SINGLE NONE 25
6W4 O27 C26 DOUBLE NONE 26
6W4 C23 C21 SINGLE NONE 27
6W4 C21 C26 SINGLE BEGINDASH 28
6W4 C26 N28 SINGLE NONE 29
6W4 N28 C30 SINGLE NONE 30
6W4 C30 C33 SINGLE NONE 31
6W4 C38 C36 DOUBLE NONE 32
6W4 C38 C40 SINGLE NONE 33
6W4 C36 C35 SINGLE NONE 34
6W4 C40 C42 DOUBLE NONE 35
6W4 C35 C33 SINGLE NONE 36
6W4 C35 C44 DOUBLE NONE 37
6W4 C33 C46 SINGLE NONE 38
6W4 C42 C44 SINGLE NONE 39
6W4 C46 C55 SINGLE NONE 40
6W4 C46 C47 DOUBLE NONE 41
6W4 C55 C53 DOUBLE NONE 42
6W4 C47 C49 SINGLE NONE 43
6W4 C53 C51 SINGLE NONE 44
6W4 C49 C51 DOUBLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6W4 MurckoScaffold S1 scaffold 'O=C(NCC(c1ccccc1)c1ccccc1)[C@@H]1C[C@H](n2cc(C3CC3)nn2)CN1C(=O)c1ccccc1' InChI=1S/C31H31N5O2/c37-30(32-19-27(22-10-4-1-5-11-22)23-12-6-2-7-13-23)29-18-26(36-21-28(33-34-36)24-16-17-24)20-35(29)31(38)25-14-8-3-9-15-25/h1-15,21,24,26-27,29H,16-20H2,(H,32,37)/t26-,29-/m0/s1 NHAWGDGFGPSFBB-WNJJXGMVSA-N
6W4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6W4 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
6W4 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
6W4 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6W4 N1 S1 1
6W4 N3 S1 1
6W4 C4 S1 1
6W4 C5 S1 1
6W4 C7 S1 1
6W4 C15 S1 1
6W4 C17 S1 1
6W4 C21 S1 1
6W4 C26 S1 1
6W4 N2 S1 1
6W4 C9 S1 1
6W4 C12 S1 1
6W4 N20 S1 1
6W4 C23 S1 1
6W4 O27 S1 1
6W4 N28 S1 1
6W4 C30 S1 1
6W4 C33 S1 1
6W4 C35 S1 1
6W4 C36 S1 1
6W4 C38 S1 1
6W4 C40 S1 1
6W4 C42 S1 1
6W4 C44 S1 1
6W4 C46 S1 1
6W4 C47 S1 1
6W4 C49 S1 1
6W4 C51 S1 1
6W4 C53 S1 1
6W4 C55 S1 1
6W4 C57 S1 1
6W4 O58 S1 1
6W4 C59 S1 1
6W4 C60 S1 1
6W4 C62 S1 1
6W4 C64 S1 1
6W4 C65 S1 1
6W4 C67 S1 1
6W4 N20 F1 1
6W4 C57 F1 1
6W4 O58 F1 1
6W4 C59 F1 1
6W4 N28 F1 2
6W4 C26 F1 2
6W4 O27 F1 2
6W4 C21 F1 2
6W4 C7 F2 1
6W4 C9 F2 1
6W4 C12 F2 1
6W4 O27 F3 1
6W4 C26 F3 1
6W4 C21 F3 1
6W4 N20 F3 1
6W4 C35 F4 1
6W4 C36 F4 1
6W4 C38 F4 1
6W4 C40 F4 1
6W4 C42 F4 1
6W4 C44 F4 1
6W4 C46 F4 2
6W4 C55 F4 2
6W4 C53 F4 2
6W4 C51 F4 2
6W4 C49 F4 2
6W4 C47 F4 2
6W4 C59 F4 3
6W4 C60 F4 3
6W4 C62 F4 3
6W4 C64 F4 3
6W4 C65 F4 3
6W4 C67 F4 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 6W4
_pdbe_chem_comp_rdkit_properties.exactmw 534.274
_pdbe_chem_comp_rdkit_properties.amw 534.664
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.312
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 281.681
_pdbe_chem_comp_rdkit_properties.tpsa 106.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.745
_pdbe_chem_comp_rdkit_properties.CrippenMR 151.216
_pdbe_chem_comp_rdkit_properties.chi0v 19.500
_pdbe_chem_comp_rdkit_properties.chi1v 10.821
_pdbe_chem_comp_rdkit_properties.chi2v 4.948
_pdbe_chem_comp_rdkit_properties.chi3v 4.948
_pdbe_chem_comp_rdkit_properties.chi4v 3.084
_pdbe_chem_comp_rdkit_properties.chi0n 53.500
_pdbe_chem_comp_rdkit_properties.chi1n 27.662
_pdbe_chem_comp_rdkit_properties.chi2n 4.948
_pdbe_chem_comp_rdkit_properties.chi3n 4.948
_pdbe_chem_comp_rdkit_properties.chi4n 3.084
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.300
_pdbe_chem_comp_rdkit_properties.kappa1 7.703
_pdbe_chem_comp_rdkit_properties.kappa2 11.437
_pdbe_chem_comp_rdkit_properties.kappa3 5.533
_pdbe_chem_comp_rdkit_properties.Phi 2.203
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6W4 UniChem ChEMBL CHEMBL4448473
6W4 UniChem PDBe 6W4
6W4 UniChem PubChem 131955087
6W4 UniChem BindingDb 50533256
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6W4 N1 -2.574 -2.611 0.437 ETKDGv3 1
6W4 N3 -4.026 -3.043 -1.161 ETKDGv3 2
6W4 C4 -3.445 -4.269 -0.720 ETKDGv3 3
6W4 C5 -2.580 -4.019 0.248 ETKDGv3 4
6W4 C7 -3.746 -5.614 -1.305 ETKDGv3 5
6W4 C15 -2.146 -1.910 1.650 ETKDGv3 6
6W4 C17 -1.933 -0.416 1.399 ETKDGv3 7
6W4 C21 -0.143 -1.207 2.821 ETKDGv3 8
6W4 C26 1.349 -1.198 2.611 ETKDGv3 9
6W4 N2 -3.522 -2.108 -0.462 ETKDGv3 10
6W4 C9 -5.228 -5.933 -1.430 ETKDGv3 11
6W4 C12 -4.399 -6.594 -0.342 ETKDGv3 12
6W4 N20 -0.778 -0.047 2.206 ETKDGv3 13
6W4 C23 -0.796 -2.420 2.161 ETKDGv3 14
6W4 O27 2.103 -1.629 3.524 ETKDGv3 15
6W4 N28 1.908 -0.744 1.370 ETKDGv3 16
6W4 C30 3.355 -0.690 1.153 ETKDGv3 17
6W4 C33 3.730 -0.001 -0.183 ETKDGv3 18
6W4 C35 3.169 -0.787 -1.362 ETKDGv3 19
6W4 C36 1.874 -0.415 -2.001 ETKDGv3 20
6W4 C38 1.372 -1.153 -2.998 ETKDGv3 21
6W4 C40 2.099 -2.345 -3.476 ETKDGv3 22
6W4 C42 3.259 -2.691 -2.909 ETKDGv3 23
6W4 C44 3.815 -1.885 -1.803 ETKDGv3 24
6W4 C46 3.416 1.493 -0.276 ETKDGv3 25
6W4 C47 2.852 2.204 0.727 ETKDGv3 26
6W4 C49 2.598 3.652 0.574 ETKDGv3 27
6W4 C51 2.928 4.277 -0.560 ETKDGv3 28
6W4 C53 3.568 3.525 -1.654 ETKDGv3 29
6W4 C55 3.809 2.215 -1.518 ETKDGv3 30
6W4 C57 -0.495 1.305 2.612 ETKDGv3 31
6W4 O58 -0.046 1.519 3.770 ETKDGv3 32
6W4 C59 -0.700 2.455 1.701 ETKDGv3 33
6W4 C60 -1.017 3.790 2.266 ETKDGv3 34
6W4 C62 -1.126 4.858 1.466 ETKDGv3 35
6W4 C64 -0.922 4.721 0.004 ETKDGv3 36
6W4 C65 -0.656 3.510 -0.512 ETKDGv3 37
6W4 C67 -0.522 2.336 0.373 ETKDGv3 38
6W4 C69 -1.064 5.920 -0.890 ETKDGv3 39
6W4 N72 -2.419 5.983 -1.427 ETKDGv3 40
6W4 H1 -1.994 -4.741 0.801 ETKDGv3 41
6W4 H2 -3.084 -6.054 -2.081 ETKDGv3 42
6W4 H3 -2.913 -2.044 2.444 ETKDGv3 43
6W4 H4 -2.830 0.161 1.712 ETKDGv3 44
6W4 H5 -1.718 -0.227 0.327 ETKDGv3 45
6W4 H6 -0.372 -1.209 3.910 ETKDGv3 46
6W4 H7 -5.933 -5.164 -1.047 ETKDGv3 47
6W4 H8 -5.485 -6.610 -2.271 ETKDGv3 48
6W4 H9 -4.611 -6.211 0.680 ETKDGv3 49
6W4 H10 -4.164 -7.661 -0.541 ETKDGv3 50
6W4 H11 -0.181 -2.777 1.303 ETKDGv3 51
6W4 H12 -0.927 -3.253 2.886 ETKDGv3 52
6W4 H13 1.256 -0.415 0.626 ETKDGv3 53
6W4 H14 3.844 -0.153 1.995 ETKDGv3 54
6W4 H15 3.756 -1.727 1.156 ETKDGv3 55
6W4 H16 4.841 -0.057 -0.244 ETKDGv3 56
6W4 H17 1.329 0.458 -1.668 ETKDGv3 57
6W4 H18 0.432 -0.876 -3.458 ETKDGv3 58
6W4 H19 1.690 -2.937 -4.284 ETKDGv3 59
6W4 H20 3.793 -3.567 -3.257 ETKDGv3 60
6W4 H21 4.746 -2.199 -1.347 ETKDGv3 61
6W4 H22 2.565 1.751 1.664 ETKDGv3 62
6W4 H23 2.131 4.203 1.380 ETKDGv3 63
6W4 H24 2.732 5.335 -0.675 ETKDGv3 64
6W4 H25 3.850 4.037 -2.565 ETKDGv3 65
6W4 H26 4.288 1.678 -2.327 ETKDGv3 66
6W4 H27 -1.166 3.908 3.332 ETKDGv3 67
6W4 H28 -1.362 5.825 1.892 ETKDGv3 68
6W4 H29 -0.514 3.383 -1.578 ETKDGv3 69
6W4 H30 -0.219 1.398 -0.068 ETKDGv3 70
6W4 H31 -0.836 6.851 -0.324 ETKDGv3 71
6W4 H32 -0.335 5.855 -1.728 ETKDGv3 72
6W4 H33 -3.071 6.214 -0.642 ETKDGv3 73
6W4 H34 -2.459 6.788 -2.093 ETKDGv3 74
#