data_6XO
#
_chem_comp.id 6XO
_chem_comp.name
"(2~{S})-3-cyclohexyl-2-[[(2~{S})-4-methyl-2-[[oxidanyl(phenylmethoxycarbonylaminomethyl)phosphoryl]amino]pentanoyl]amino]propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H38 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-07-15
_chem_comp.pdbx_modified_date 2016-12-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.548
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 6XO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LIF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6XO C1 C1 C 0 1 Y N N N N N 17.376 40.021 -12.273 9.946 -1.261 1.154 C1 6XO 1
6XO C2 C2 C 0 1 Y N N N N N 17.271 40.611 -11.010 8.805 -1.732 1.776 C2 6XO 2
6XO C3 C3 C 0 1 Y N N N N N 16.033 41.030 -10.535 7.583 -1.649 1.135 C3 6XO 3
6XO C7 C4 C 0 1 N N N N N N 13.542 41.359 -10.781 6.170 -1.004 -0.827 C7 6XO 4
6XO C9 C5 C 0 1 N N N N N N 12.529 40.596 -8.851 4.328 0.498 -1.044 C9 6XO 5
6XO C11 C6 C 0 1 N N N N N N 11.892 39.853 -6.669 2.371 1.912 -1.374 C11 6XO 6
6XO C14 C7 C 0 1 N N S N N N 10.001 38.179 -3.660 -1.522 1.439 0.071 C14 6XO 7
6XO C15 C8 C 0 1 N N N N N N 8.800 39.066 -3.840 -2.719 0.893 -0.663 C15 6XO 8
6XO C21 C9 C 0 1 N N N N N N 10.377 38.205 -2.155 -1.911 2.732 0.791 C21 6XO 9
6XO C22 C10 C 0 1 N N N N N N 9.267 37.734 -1.208 -2.910 2.414 1.906 C22 6XO 10
6XO C24 C11 C 0 1 N N N N N N 9.581 38.130 0.241 -2.218 1.583 2.988 C24 6XO 11
6XO C27 C12 C 0 1 N N N N N N 7.279 43.392 -2.481 -4.874 -2.288 0.373 C27 6XO 12
6XO C30 C13 C 0 1 N N N N N N 6.863 46.088 -1.371 -4.520 -5.190 0.183 C30 6XO 13
6XO C31 C14 C 0 1 N N N N N N 6.341 44.840 -0.636 -4.719 -4.496 1.532 C31 6XO 14
6XO C32 C15 C 0 1 N N N N N N 7.298 43.687 -0.970 -5.577 -3.244 1.339 C32 6XO 15
6XO C33 C16 C 0 1 N N N N N N 8.117 42.194 -5.273 -5.865 1.153 -0.978 C33 6XO 16
6XO C4 C17 C 0 1 Y N N N N N 14.885 40.880 -11.315 7.502 -1.094 -0.128 C4 6XO 17
6XO P12 P1 P 0 1 N N N N N N 11.384 38.275 -5.927 1.064 1.419 -0.203 P12 6XO 18
6XO O20 O1 O 0 1 N N N N N N 10.052 37.840 -6.519 1.191 -0.024 0.099 O20 6XO 19
6XO O19 O2 O 0 1 N N N N N N 12.462 37.259 -6.125 1.214 2.267 1.158 O19 6XO 20
6XO N13 N1 N 0 1 N N N N N N 11.185 38.645 -4.414 -0.444 1.718 -0.887 N13 6XO 21
6XO C23 C18 C 0 1 N N N N N N 9.104 36.212 -1.319 -3.425 3.719 2.516 C23 6XO 22
6XO O25 O3 O 0 1 N N N N N N 7.669 38.608 -3.815 -2.728 0.871 -1.876 O25 6XO 23
6XO N16 N2 N 0 1 N N N N N N 9.075 40.366 -3.969 -3.779 0.428 0.027 N16 6XO 24
6XO C17 C19 C 0 1 N N S N N N 8.034 41.376 -4.032 -4.975 -0.028 -0.686 C17 6XO 25
6XO O35 O4 O 0 1 N N N N N N 9.328 42.377 -5.771 -7.026 0.973 -1.628 O35 6XO 26
6XO O34 O5 O 0 1 N N N N N N 7.123 42.650 -5.806 -5.535 2.260 -0.626 O34 6XO 27
6XO C26 C20 C 0 1 N N N N N N 8.241 42.230 -2.749 -5.732 -1.036 0.180 C26 6XO 28
6XO C29 C21 C 0 1 N N N N N N 6.911 45.843 -2.894 -3.817 -4.235 -0.783 C29 6XO 29
6XO C28 C22 C 0 1 N N N N N N 7.802 44.631 -3.220 -4.675 -2.983 -0.976 C28 6XO 30
6XO C5 C23 C 0 1 Y N N N N N 14.979 40.321 -12.584 8.643 -0.622 -0.751 C5 6XO 31
6XO C6 C24 C 0 1 Y N N N N N 16.220 39.886 -13.055 9.864 -0.701 -0.108 C6 6XO 32
6XO O8 O6 O 0 1 N N N N N N 13.209 40.246 -9.928 5.535 0.259 -0.496 O8 6XO 33
6XO O18 O7 O 0 1 N N N N N N 11.926 41.643 -8.760 3.820 -0.326 -1.778 O18 6XO 34
6XO N10 N3 N 0 1 N N N N N N 12.606 39.641 -7.908 3.684 1.652 -0.778 N10 6XO 35
6XO H1 H1 H 0 1 N N N N N N 18.331 39.675 -12.640 10.901 -1.326 1.654 H1 6XO 36
6XO H2 H2 H 0 1 N N N N N N 18.154 40.742 -10.402 8.869 -2.166 2.763 H2 6XO 37
6XO H3 H3 H 0 1 N N N N N N 15.959 41.475 -9.554 6.692 -2.018 1.621 H3 6XO 38
6XO H4 H4 H 0 1 N N N N N N 13.638 42.296 -10.213 6.321 -1.063 -1.905 H4 6XO 39
6XO H5 H5 H 0 1 N N N N N N 12.805 41.492 -11.587 5.533 -1.827 -0.503 H5 6XO 40
6XO H6 H6 H 0 1 N N N N N N 12.546 40.387 -5.964 2.270 1.338 -2.295 H6 6XO 41
6XO H7 H7 H 0 1 N N N N N N 10.997 40.460 -6.870 2.277 2.975 -1.596 H7 6XO 42
6XO H8 H8 H 0 1 N N N N N N 9.749 37.148 -3.951 -1.178 0.706 0.802 H8 6XO 43
6XO H9 H9 H 0 1 N N N N N N 11.251 37.553 -2.009 -1.021 3.191 1.220 H9 6XO 44
6XO H10 H10 H 0 1 N N N N N N 10.641 39.238 -1.886 -2.368 3.420 0.079 H10 6XO 45
6XO H11 H11 H 0 1 N N N N N N 8.322 38.212 -1.507 -3.747 1.850 1.494 H11 6XO 46
6XO H12 H12 H 0 1 N N N N N N 8.772 37.782 0.900 -1.433 2.176 3.455 H12 6XO 47
6XO H13 H13 H 0 1 N N N N N N 10.530 37.668 0.550 -2.948 1.288 3.742 H13 6XO 48
6XO H14 H14 H 0 1 N N N N N N 9.666 39.224 0.312 -1.781 0.692 2.538 H14 6XO 49
6XO H15 H15 H 0 1 N N N N N N 6.261 43.141 -2.814 -3.905 -2.005 0.782 H15 6XO 50
6XO H16 H16 H 0 1 N N N N N N 7.876 46.322 -1.011 -3.909 -6.082 0.320 H16 6XO 51
6XO H17 H17 H 0 1 N N N N N N 6.194 46.936 -1.162 -5.490 -5.474 -0.227 H17 6XO 52
6XO H18 H18 H 0 1 N N N N N N 6.329 45.018 0.449 -5.220 -5.177 2.220 H18 6XO 53
6XO H19 H19 H 0 1 N N N N N N 5.324 44.598 -0.979 -3.750 -4.213 1.941 H19 6XO 54
6XO H20 H20 H 0 1 N N N N N N 6.985 42.786 -0.421 -5.719 -2.750 2.300 H20 6XO 55
6XO H21 H21 H 0 1 N N N N N N 8.319 43.965 -0.668 -6.546 -3.527 0.930 H21 6XO 56
6XO H22 H22 H 0 1 N N N N N N 12.111 36.511 -6.594 1.067 3.216 1.047 H22 6XO 57
6XO H23 H23 H 0 1 N N N N N N 11.986 38.294 -3.929 -0.503 2.664 -1.233 H23 6XO 58
6XO H24 H24 H 0 1 N N N N N N 8.307 35.877 -0.639 -3.918 4.311 1.745 H24 6XO 59
6XO H25 H25 H 0 1 N N N N N N 8.839 35.946 -2.353 -4.136 3.493 3.310 H25 6XO 60
6XO H26 H26 H 0 1 N N N N N N 10.050 35.721 -1.045 -2.588 4.283 2.928 H26 6XO 61
6XO H27 H27 H 0 1 N N N N N N 10.031 40.654 -4.024 -3.750 0.395 0.996 H27 6XO 62
6XO H28 H28 H 0 1 N N N N N N 7.045 40.897 -3.977 -4.681 -0.502 -1.623 H28 6XO 63
6XO H29 H29 H 0 1 N N N N N N 9.269 42.895 -6.565 -7.563 1.760 -1.793 H29 6XO 64
6XO H30 H30 H 0 1 N N N N N N 8.172 41.547 -1.890 -6.666 -1.308 -0.311 H30 6XO 65
6XO H31 H31 H 0 1 N N N N N N 9.255 42.653 -2.801 -5.948 -0.591 1.151 H31 6XO 66
6XO H32 H32 H 0 1 N N N N N N 7.319 46.736 -3.391 -2.848 -3.952 -0.374 H32 6XO 67
6XO H33 H33 H 0 1 N N N N N N 5.892 45.652 -3.262 -3.675 -4.729 -1.744 H33 6XO 68
6XO H34 H34 H 0 1 N N N N N N 7.784 44.445 -4.304 -5.645 -3.266 -1.386 H34 6XO 69
6XO H35 H35 H 0 1 N N N N N N 8.834 44.839 -2.901 -4.175 -2.302 -1.665 H35 6XO 70
6XO H36 H36 H 0 1 N N N N N N 14.098 40.224 -13.202 8.579 -0.188 -1.737 H36 6XO 71
6XO H37 H37 H 0 1 N N N N N N 16.290 39.439 -14.036 10.755 -0.332 -0.594 H37 6XO 72
6XO H38 H38 H 0 1 N N N N N N 13.141 38.810 -8.059 4.090 2.310 -0.192 H38 6XO 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6XO C6 C5 DOUB Y N 1
6XO C6 C1 SING Y N 2
6XO C5 C4 SING Y N 3
6XO C1 C2 DOUB Y N 4
6XO C4 C7 SING N N 5
6XO C4 C3 DOUB Y N 6
6XO C2 C3 SING Y N 7
6XO C7 O8 SING N N 8
6XO O8 C9 SING N N 9
6XO C9 O18 DOUB N N 10
6XO C9 N10 SING N N 11
6XO N10 C11 SING N N 12
6XO C11 P12 SING N N 13
6XO O20 P12 DOUB N N 14
6XO O19 P12 SING N N 15
6XO P12 N13 SING N N 16
6XO O34 C33 DOUB N N 17
6XO O35 C33 SING N N 18
6XO C33 C17 SING N N 19
6XO N13 C14 SING N N 20
6XO C17 N16 SING N N 21
6XO C17 C26 SING N N 22
6XO N16 C15 SING N N 23
6XO C15 O25 DOUB N N 24
6XO C15 C14 SING N N 25
6XO C14 C21 SING N N 26
6XO C28 C29 SING N N 27
6XO C28 C27 SING N N 28
6XO C29 C30 SING N N 29
6XO C26 C27 SING N N 30
6XO C27 C32 SING N N 31
6XO C21 C22 SING N N 32
6XO C30 C31 SING N N 33
6XO C23 C22 SING N N 34
6XO C22 C24 SING N N 35
6XO C32 C31 SING N N 36
6XO C1 H1 SING N N 37
6XO C2 H2 SING N N 38
6XO C3 H3 SING N N 39
6XO C7 H4 SING N N 40
6XO C7 H5 SING N N 41
6XO C11 H6 SING N N 42
6XO C11 H7 SING N N 43
6XO C14 H8 SING N N 44
6XO C21 H9 SING N N 45
6XO C21 H10 SING N N 46
6XO C22 H11 SING N N 47
6XO C24 H12 SING N N 48
6XO C24 H13 SING N N 49
6XO C24 H14 SING N N 50
6XO C27 H15 SING N N 51
6XO C30 H16 SING N N 52
6XO C30 H17 SING N N 53
6XO C31 H18 SING N N 54
6XO C31 H19 SING N N 55
6XO C32 H20 SING N N 56
6XO C32 H21 SING N N 57
6XO O19 H22 SING N N 58
6XO N13 H23 SING N N 59
6XO C23 H24 SING N N 60
6XO C23 H25 SING N N 61
6XO C23 H26 SING N N 62
6XO N16 H27 SING N N 63
6XO C17 H28 SING N N 64
6XO O35 H29 SING N N 65
6XO C26 H30 SING N N 66
6XO C26 H31 SING N N 67
6XO C29 H32 SING N N 68
6XO C29 H33 SING N N 69
6XO C28 H34 SING N N 70
6XO C28 H35 SING N N 71
6XO C5 H36 SING N N 72
6XO C6 H37 SING N N 73
6XO N10 H38 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6XO InChI InChI 1.03 InChI=1S/C24H38N3O7P/c1-17(2)13-20(22(28)26-21(23(29)30)14-18-9-5-3-6-10-18)27-35(32,33)16-25-24(31)34-15-19-11-7-4-8-12-19/h4,7-8,11-12,17-18,20-21H,3,5-6,9-10,13-16H2,1-2H3,(H,25,31)(H,26,28)(H,29,30)(H2,27,32,33)/t20-,21-/m0/s1
6XO InChIKey InChI 1.03 XUMUUEQXPBWJGZ-SFTDATJTSA-N
6XO SMILES_CANONICAL CACTVS 3.385 CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(O)=O
6XO SMILES CACTVS 3.385 CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(O)=O
6XO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 CC(C)C[C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)O)NP(=O)(CNC(=O)OCc2ccccc2)O
6XO SMILES "OpenEye OEToolkits" 2.0.5 CC(C)CC(C(=O)NC(CC1CCCCC1)C(=O)O)NP(=O)(CNC(=O)OCc2ccccc2)O
#
_pdbx_chem_comp_identifier.comp_id 6XO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
"(2~{S})-3-cyclohexyl-2-[[(2~{S})-4-methyl-2-[[oxidanyl(phenylmethoxycarbonylaminomethyl)phosphoryl]amino]pentanoyl]amino]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6XO 'Create component' 2016-07-15 EBI
6XO 'Initial release' 2016-12-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
6XO C1 C 19.887 4.500 1
6XO C2 C 19.887 3.000 2
6XO C3 C 18.588 2.250 3
6XO C7 C 15.990 2.250 4
6XO C9 C 13.392 2.250 5
6XO C11 C 10.794 2.250 6
6XO C14 C 6.897 3.000 7
6XO C15 C 6.897 1.500 8
6XO C21 C 5.598 3.750 9
6XO C22 C 5.598 5.250 10
6XO C24 C 6.897 6.000 11
6XO C27 C 4.299 -3.000 12
6XO C30 C 4.299 -6.000 13
6XO C31 C 5.598 -5.250 14
6XO C32 C 5.598 -3.750 15
6XO C33 C 6.897 -1.500 16
6XO C4 C 17.290 3.000 17
6XO P12 P 9.495 3.000 18
6XO O20 O 10.245 4.299 19
6XO O19 O 8.745 1.701 20
6XO N13 N 8.196 3.750 21
6XO C23 C 4.299 6.000 22
6XO O25 O 8.196 0.750 23
6XO N16 N 5.598 0.750 24
6XO C17 C 5.598 -0.750 25
6XO O35 O 6.897 -3.000 26
6XO O34 O 8.196 -0.750 27
6XO C26 C 4.299 -1.500 28
6XO C29 C 3.000 -5.250 29
6XO C28 C 3.000 -3.750 30
6XO C5 C 17.290 4.500 31
6XO C6 C 18.588 5.250 32
6XO O8 O 14.691 3.000 33
6XO O18 O 13.392 0.750 34
6XO N10 N 12.093 3.000 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
6XO C6 C5 SINGLE NONE 1
6XO C6 C1 DOUBLE NONE 2
6XO C5 C4 DOUBLE NONE 3
6XO C1 C2 SINGLE NONE 4
6XO C4 C7 SINGLE NONE 5
6XO C4 C3 SINGLE NONE 6
6XO C2 C3 DOUBLE NONE 7
6XO C7 O8 SINGLE NONE 8
6XO O8 C9 SINGLE NONE 9
6XO C9 O18 DOUBLE NONE 10
6XO C9 N10 SINGLE NONE 11
6XO N10 C11 SINGLE NONE 12
6XO C11 P12 SINGLE NONE 13
6XO O20 P12 DOUBLE NONE 14
6XO P12 O19 SINGLE BEGINDASH 15
6XO P12 N13 SINGLE NONE 16
6XO O34 C33 DOUBLE NONE 17
6XO O35 C33 SINGLE NONE 18
6XO C33 C17 SINGLE NONE 19
6XO N13 C14 SINGLE NONE 20
6XO C17 N16 SINGLE NONE 21
6XO C17 C26 SINGLE BEGINDASH 22
6XO N16 C15 SINGLE NONE 23
6XO C15 O25 DOUBLE NONE 24
6XO C15 C14 SINGLE NONE 25
6XO C14 C21 SINGLE BEGINDASH 26
6XO C28 C29 SINGLE NONE 27
6XO C28 C27 SINGLE NONE 28
6XO C29 C30 SINGLE NONE 29
6XO C26 C27 SINGLE NONE 30
6XO C27 C32 SINGLE NONE 31
6XO C21 C22 SINGLE NONE 32
6XO C30 C31 SINGLE NONE 33
6XO C23 C22 SINGLE NONE 34
6XO C22 C24 SINGLE NONE 35
6XO C32 C31 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
6XO MurckoScaffold S1 scaffold 'O=C(CN[PH](=O)CNC(=O)OCc1ccccc1)NCCC1CCCCC1' InChI=1S/C19H30N3O4P/c23-18(20-12-11-16-7-3-1-4-8-16)13-22-27(25)15-21-19(24)26-14-17-9-5-2-6-10-17/h2,5-6,9-10,16,27H,1,3-4,7-8,11-15H2,(H,20,23)(H,21,24)(H,22,25) HIWQEGPFFPNPNI-UHFFFAOYSA-N
6XO amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
6XO cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
6XO peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
6XO phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
6XO Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
6XO C1 S1 1
6XO C2 S1 1
6XO C3 S1 1
6XO C7 S1 1
6XO C9 S1 1
6XO C11 S1 1
6XO C14 S1 1
6XO C15 S1 1
6XO C27 S1 1
6XO C30 S1 1
6XO C31 S1 1
6XO C32 S1 1
6XO C4 S1 1
6XO P12 S1 1
6XO O20 S1 1
6XO N13 S1 1
6XO O25 S1 1
6XO N16 S1 1
6XO C17 S1 1
6XO C26 S1 1
6XO C29 S1 1
6XO C28 S1 1
6XO C5 S1 1
6XO C6 S1 1
6XO O8 S1 1
6XO O18 S1 1
6XO N10 S1 1
6XO N16 F1 1
6XO C15 F1 1
6XO O25 F1 1
6XO C14 F1 1
6XO C27 F2 1
6XO C28 F2 1
6XO C29 F2 1
6XO C30 F2 1
6XO C31 F2 1
6XO C32 F2 1
6XO O25 F3 1
6XO C15 F3 1
6XO C14 F3 1
6XO N13 F3 1
6XO O34 F3 2
6XO C33 F3 2
6XO C17 F3 2
6XO N16 F3 2
6XO C1 F4 1
6XO C6 F4 1
6XO C5 F4 1
6XO C4 F4 1
6XO C3 F4 1
6XO C2 F4 1
6XO C15 F5 1
6XO N16 F5 1
6XO C17 F5 1
6XO C26 F5 1
6XO C27 F5 1
6XO C28 F5 1
6XO C29 F5 1
6XO C30 F5 1
6XO C31 F5 1
6XO C32 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 6XO
_pdbe_chem_comp_rdkit_properties.exactmw 511.245
_pdbe_chem_comp_rdkit_properties.amw 511.556
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.000
_pdbe_chem_comp_rdkit_properties.tpsa 154.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.545
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.326
_pdbe_chem_comp_rdkit_properties.chi0v 17.541
_pdbe_chem_comp_rdkit_properties.chi1v 9.959
_pdbe_chem_comp_rdkit_properties.chi2v 3.652
_pdbe_chem_comp_rdkit_properties.chi3v 3.652
_pdbe_chem_comp_rdkit_properties.chi4v 2.278
_pdbe_chem_comp_rdkit_properties.chi0n 54.647
_pdbe_chem_comp_rdkit_properties.chi1n 27.040
_pdbe_chem_comp_rdkit_properties.chi2n 2.836
_pdbe_chem_comp_rdkit_properties.chi3n 2.836
_pdbe_chem_comp_rdkit_properties.chi4n 1.626
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.420
_pdbe_chem_comp_rdkit_properties.kappa1 6.341
_pdbe_chem_comp_rdkit_properties.kappa2 14.215
_pdbe_chem_comp_rdkit_properties.kappa3 11.241
_pdbe_chem_comp_rdkit_properties.Phi 2.576
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
6XO UniChem PDBe 6XO
6XO UniChem ZINC ZINC000584905241
6XO UniChem PubChem 122707111
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
6XO C1 10.191 -1.704 2.091 ETKDGv3 1
6XO C2 9.628 -0.744 3.063 ETKDGv3 2
6XO C3 9.102 0.411 2.639 ETKDGv3 3
6XO C7 8.468 2.022 0.710 ETKDGv3 4
6XO C9 6.078 1.341 0.612 ETKDGv3 5
6XO C11 3.675 0.604 0.395 ETKDGv3 6
6XO C14 -0.220 -0.215 -1.024 ETKDGv3 7
6XO C15 -1.513 -0.171 -0.240 ETKDGv3 8
6XO C21 -0.249 -1.396 -2.028 ETKDGv3 9
6XO C22 -0.570 -2.795 -1.436 ETKDGv3 10
6XO C24 0.522 -3.296 -0.480 ETKDGv3 11
6XO C27 -6.425 1.249 -0.264 ETKDGv3 12
6XO C30 -8.984 1.798 0.782 ETKDGv3 13
6XO C31 -7.814 1.916 1.776 ETKDGv3 14
6XO C32 -6.429 1.977 1.097 ETKDGv3 15
6XO C33 -4.480 -1.158 -0.271 ETKDGv3 16
6XO C4 9.082 0.735 1.190 ETKDGv3 17
6XO P12 2.420 0.317 -0.894 ETKDGv3 18
6XO O20 2.153 1.621 -1.612 ETKDGv3 19
6XO O19 3.021 -0.821 -1.992 ETKDGv3 20
6XO N13 0.947 -0.278 -0.121 ETKDGv3 21
6XO C23 -0.761 -3.806 -2.575 ETKDGv3 22
6XO O25 -1.569 -0.675 0.916 ETKDGv3 23
6XO N16 -2.695 0.377 -0.843 ETKDGv3 24
6XO C17 -4.013 0.270 -0.210 ETKDGv3 25
6XO O35 -4.905 -1.797 0.890 ETKDGv3 26
6XO O34 -4.501 -1.774 -1.371 ETKDGv3 27
6XO C26 -5.016 1.215 -0.909 ETKDGv3 28
6XO C29 -8.674 2.513 -0.535 ETKDGv3 29
6XO C28 -7.436 1.916 -1.235 ETKDGv3 30
6XO C5 9.590 -0.146 0.310 ETKDGv3 31
6XO C6 10.172 -1.419 0.783 ETKDGv3 32
6XO O8 7.261 1.764 -0.004 ETKDGv3 33
6XO O18 6.020 1.210 1.866 ETKDGv3 34
6XO N10 4.932 1.060 -0.195 ETKDGv3 35
6XO H1 10.616 -2.636 2.439 ETKDGv3 36
6XO H2 9.642 -0.979 4.120 ETKDGv3 37
6XO H3 8.689 1.107 3.358 ETKDGv3 38
6XO H4 9.182 2.534 0.030 ETKDGv3 39
6XO H5 8.267 2.713 1.558 ETKDGv3 40
6XO H6 3.295 1.371 1.102 ETKDGv3 41
6XO H7 3.845 -0.346 0.945 ETKDGv3 42
6XO H8 -0.184 0.729 -1.612 ETKDGv3 43
6XO H9 -1.030 -1.157 -2.785 ETKDGv3 44
6XO H10 0.703 -1.441 -2.592 ETKDGv3 45
6XO H11 -1.530 -2.752 -0.878 ETKDGv3 46
6XO H12 0.324 -4.350 -0.187 ETKDGv3 47
6XO H13 1.521 -3.245 -0.961 ETKDGv3 48
6XO H14 0.528 -2.701 0.455 ETKDGv3 49
6XO H15 -6.766 0.203 -0.095 ETKDGv3 50
6XO H16 -9.190 0.725 0.572 ETKDGv3 51
6XO H17 -9.902 2.233 1.235 ETKDGv3 52
6XO H18 -7.848 1.044 2.466 ETKDGv3 53
6XO H19 -7.947 2.830 2.395 ETKDGv3 54
6XO H20 -6.144 3.042 0.940 ETKDGv3 55
6XO H21 -5.687 1.532 1.790 ETKDGv3 56
6XO H22 3.312 -1.585 -1.433 ETKDGv3 57
6XO H23 0.784 0.373 0.683 ETKDGv3 58
6XO H24 -1.582 -3.477 -3.248 ETKDGv3 59
6XO H25 0.172 -3.908 -3.169 ETKDGv3 60
6XO H26 -1.036 -4.802 -2.165 ETKDGv3 61
6XO H27 -2.613 0.810 -1.791 ETKDGv3 62
6XO H28 -3.910 0.576 0.852 ETKDGv3 63
6XO H29 -5.228 -2.756 0.866 ETKDGv3 64
6XO H30 -4.596 2.245 -0.916 ETKDGv3 65
6XO H31 -5.111 0.896 -1.972 ETKDGv3 66
6XO H32 -8.497 3.591 -0.323 ETKDGv3 67
6XO H33 -9.554 2.445 -1.211 ETKDGv3 68
6XO H34 -7.768 1.155 -1.976 ETKDGv3 69
6XO H35 -6.942 2.733 -1.807 ETKDGv3 70
6XO H36 9.576 0.065 -0.753 ETKDGv3 71
6XO H37 10.582 -2.121 0.069 ETKDGv3 72
6XO H38 5.017 1.183 -1.230 ETKDGv3 73
#