data_781
#
_chem_comp.id 781
_chem_comp.name N-(5-hydroxynaphthalen-2-yl)propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H13 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N-(5-hydroxynaphthalen-2-yl)prop-2-enamide, bound form"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-03-23
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 215.248
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 781
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YRT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
781 O1 O1 O 0 1 N N N N N N 62.053 4.179 15.364 -2.916 -0.897 -0.640 O1 781 1
781 C7 C1 C 0 1 N N N N N N 61.185 5.055 15.324 -3.171 0.117 -0.026 C7 781 2
781 C8 C2 C 0 1 N N N N N N 59.864 4.793 14.605 -4.605 0.511 0.217 C8 781 3
781 C9 C3 C 0 1 N N N N N N 59.507 3.309 14.586 -5.533 -0.531 -0.410 C9 781 4
781 N N1 N 0 1 N N N N N N 61.091 5.991 16.263 -2.171 0.889 0.444 N 781 5
781 C6 C4 C 0 1 Y N N N N N 62.152 6.509 16.948 -0.844 0.466 0.320 C6 781 6
781 C5 C5 C 0 1 Y N N N N N 61.880 6.967 18.236 0.153 1.397 0.126 C5 781 7
781 C4 C6 C 0 1 Y N N N N N 62.878 7.523 19.026 1.485 0.969 0.003 C4 781 8
781 C3 C7 C 0 1 Y N N N N N 62.551 7.964 20.310 2.530 1.888 -0.196 C3 781 9
781 C2 C8 C 0 1 Y N N N N N 63.533 8.530 21.124 3.811 1.441 -0.311 C2 781 10
781 C1 C9 C 0 1 Y N N N N N 64.844 8.652 20.642 4.107 0.083 -0.235 C1 781 11
781 C C10 C 0 1 Y N N N N N 65.159 8.215 19.343 3.119 -0.842 -0.043 C 781 12
781 O O2 O 0 1 N N N N N N 66.434 8.337 18.887 3.424 -2.163 0.028 O 781 13
781 C12 C11 C 0 1 Y N N N N N 64.178 7.648 18.529 1.781 -0.415 0.081 C12 781 14
781 C11 C12 C 0 1 Y N N N N N 64.468 7.194 17.236 0.740 -1.337 0.279 C11 781 15
781 C10 C13 C 0 1 Y N N N N N 63.457 6.624 16.443 -0.541 -0.897 0.402 C10 781 16
781 H1 H1 H 0 1 N N N N N N 59.947 5.151 13.568 -4.790 0.564 1.290 H1 781 17
781 H2 H2 H 0 1 N N N N N N 59.064 5.344 15.121 -4.796 1.485 -0.233 H2 781 18
781 H3 H3 H 0 1 N N N N N N 58.551 3.168 14.060 -5.343 -1.505 0.040 H3 781 19
781 H4 H4 H 0 1 N N N N N N 60.298 2.748 14.066 -6.571 -0.247 -0.234 H4 781 20
781 H5 H5 H 0 1 N Y N N N N 59.415 2.941 15.618 -5.348 -0.584 -1.483 H5 781 21
781 H6 H6 H 0 1 N N N N N N 60.180 6.340 16.483 -2.372 1.738 0.868 H6 781 22
781 H7 H7 H 0 1 N N N N N N 60.876 6.888 18.626 -0.088 2.448 0.068 H7 781 23
781 H8 H8 H 0 1 N N N N N N 61.538 7.867 20.673 2.317 2.945 -0.257 H8 781 24
781 H9 H9 H 0 1 N N N N N N 63.285 8.872 22.118 4.610 2.152 -0.463 H9 781 25
781 H10 H10 H 0 1 N N N N N N 65.612 9.082 21.268 5.131 -0.245 -0.330 H10 781 26
781 H11 H11 H 0 1 N N N N N N 66.973 8.739 19.558 3.616 -2.475 0.923 H11 781 27
781 H12 H12 H 0 1 N N N N N N 65.472 7.282 16.847 0.958 -2.393 0.340 H12 781 28
781 H13 H13 H 0 1 N N N N N N 63.684 6.275 15.446 -1.336 -1.611 0.559 H13 781 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
781 C9 C8 SING N N 1
781 C8 C7 SING N N 2
781 C7 O1 DOUB N N 3
781 C7 N SING N N 4
781 N C6 SING N N 5
781 C10 C6 DOUB Y N 6
781 C10 C11 SING Y N 7
781 C6 C5 SING Y N 8
781 C11 C12 DOUB Y N 9
781 C5 C4 DOUB Y N 10
781 C12 C4 SING Y N 11
781 C12 C SING Y N 12
781 O C SING N N 13
781 C4 C3 SING Y N 14
781 C C1 DOUB Y N 15
781 C3 C2 DOUB Y N 16
781 C1 C2 SING Y N 17
781 C8 H1 SING N N 18
781 C8 H2 SING N N 19
781 C9 H3 SING N N 20
781 C9 H4 SING N N 21
781 C9 H5 SING N N 22
781 N H6 SING N N 23
781 C5 H7 SING N N 24
781 C3 H8 SING N N 25
781 C2 H9 SING N N 26
781 C1 H10 SING N N 27
781 O H11 SING N N 28
781 C11 H12 SING N N 29
781 C10 H13 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
781 SMILES ACDLabs 12.01 O=C(Nc2cc1cccc(O)c1cc2)CC
781 InChI InChI 1.03 InChI=1S/C13H13NO2/c1-2-13(16)14-10-6-7-11-9(8-10)4-3-5-12(11)15/h3-8,15H,2H2,1H3,(H,14,16)
781 InChIKey InChI 1.03 IPFXHEAWAKCIPJ-UHFFFAOYSA-N
781 SMILES_CANONICAL CACTVS 3.385 CCC(=O)Nc1ccc2c(O)cccc2c1
781 SMILES CACTVS 3.385 CCC(=O)Nc1ccc2c(O)cccc2c1
781 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CCC(=O)Nc1ccc2c(c1)cccc2O
781 SMILES "OpenEye OEToolkits" 1.9.2 CCC(=O)Nc1ccc2c(c1)cccc2O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
781 "SYSTEMATIC NAME" ACDLabs 12.01 N-(5-hydroxynaphthalen-2-yl)propanamide
781 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N-(5-oxidanylnaphthalen-2-yl)propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
781 'Create component' 2015-03-23 RCSB
781 'Initial release' 2015-08-12 RCSB
781 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 781
_pdbx_chem_comp_synonyms.name "N-(5-hydroxynaphthalen-2-yl)prop-2-enamide, bound form"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 781
_pdbe_chem_comp_synonyms.name 'N-(5-hydroxynaphthalen-2-yl)prop-2-enamide, bound form'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
781 O1 O 5.598 -0.202 1
781 C7 C 5.598 1.298 2
781 C8 C 4.299 2.048 3
781 C9 C 3.000 1.298 4
781 N N 6.897 2.048 5
781 C6 C 8.196 1.298 6
781 C5 C 9.495 2.048 7
781 C4 C 10.794 1.298 8
781 C3 C 12.135 2.100 9
781 C2 C 13.494 1.329 10
781 C1 C 13.494 -0.233 11
781 C C 12.135 -1.004 12
781 O O 12.118 -2.504 13
781 C12 C 10.794 -0.202 14
781 C11 C 9.495 -0.952 15
781 C10 C 8.196 -0.202 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
781 C9 C8 SINGLE NONE 1
781 C8 C7 SINGLE NONE 2
781 C7 O1 DOUBLE NONE 3
781 C7 N SINGLE NONE 4
781 N C6 SINGLE NONE 5
781 C10 C6 DOUBLE NONE 6
781 C10 C11 SINGLE NONE 7
781 C6 C5 SINGLE NONE 8
781 C11 C12 DOUBLE NONE 9
781 C5 C4 DOUBLE NONE 10
781 C12 C4 SINGLE NONE 11
781 C12 C SINGLE NONE 12
781 O C SINGLE NONE 13
781 C4 C3 SINGLE NONE 14
781 C C1 DOUBLE NONE 15
781 C3 C2 DOUBLE NONE 16
781 C1 C2 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
781 MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
781 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
781 napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
781 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
781 C6 S1 1
781 C5 S1 1
781 C4 S1 1
781 C3 S1 1
781 C2 S1 1
781 C1 S1 1
781 C S1 1
781 C12 S1 1
781 C11 S1 1
781 C10 S1 1
781 N F1 1
781 C7 F1 1
781 O1 F1 1
781 C8 F1 1
781 C6 F2 1
781 C10 F2 1
781 C11 F2 1
781 C12 F2 1
781 C4 F2 1
781 C5 F2 1
781 C3 F2 1
781 C2 F2 1
781 C1 F2 1
781 C F2 1
781 C6 F3 1
781 C10 F3 1
781 C11 F3 1
781 C12 F3 1
781 C4 F3 1
781 C5 F3 1
781 C4 F3 2
781 C12 F3 2
781 C F3 2
781 C1 F3 2
781 C2 F3 2
781 C3 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 781
_pdbe_chem_comp_rdkit_properties.exactmw 215.095
_pdbe_chem_comp_rdkit_properties.amw 215.252
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.154
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.123
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.622
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.894
_pdbe_chem_comp_rdkit_properties.chi0v 7.764
_pdbe_chem_comp_rdkit_properties.chi1v 4.105
_pdbe_chem_comp_rdkit_properties.chi2v 1.710
_pdbe_chem_comp_rdkit_properties.chi3v 1.710
_pdbe_chem_comp_rdkit_properties.chi4v 1.059
_pdbe_chem_comp_rdkit_properties.chi0n 20.764
_pdbe_chem_comp_rdkit_properties.chi1n 10.461
_pdbe_chem_comp_rdkit_properties.chi2n 1.710
_pdbe_chem_comp_rdkit_properties.chi3n 1.710
_pdbe_chem_comp_rdkit_properties.chi4n 1.059
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.030
_pdbe_chem_comp_rdkit_properties.kappa1 3.004
_pdbe_chem_comp_rdkit_properties.kappa2 4.226
_pdbe_chem_comp_rdkit_properties.kappa3 1.980
_pdbe_chem_comp_rdkit_properties.Phi 0.793
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
781 UniChem PDBe 781
781 UniChem ZINC ZINC000263620562
781 UniChem PubChem 137348573
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
781 O1 2.218 1.852 0.172 ETKDGv3 1
781 C7 2.683 0.711 0.438 ETKDGv3 2
781 C8 4.108 0.586 0.883 ETKDGv3 3
781 C9 5.029 0.384 -0.315 ETKDGv3 4
781 N 1.889 -0.469 0.234 ETKDGv3 5
781 C6 0.472 -0.450 -0.009 ETKDGv3 6
781 C5 -0.403 0.572 0.619 ETKDGv3 7
781 C4 -1.726 0.563 0.391 ETKDGv3 8
781 C3 -2.609 1.567 1.015 ETKDGv3 9
781 C2 -3.924 1.543 0.783 ETKDGv3 10
781 C1 -4.536 0.526 -0.097 ETKDGv3 11
781 C -3.810 -0.426 -0.703 ETKDGv3 12
781 O -4.483 -1.336 -1.522 ETKDGv3 13
781 C12 -2.333 -0.476 -0.486 ETKDGv3 14
781 C11 -1.538 -1.417 -1.028 ETKDGv3 15
781 C10 -0.083 -1.405 -0.771 ETKDGv3 16
781 H1 4.208 -0.277 1.577 ETKDGv3 17
781 H2 4.412 1.504 1.431 ETKDGv3 18
781 H3 4.957 1.250 -1.007 ETKDGv3 19
781 H4 6.079 0.295 0.035 ETKDGv3 20
781 H5 4.757 -0.545 -0.860 ETKDGv3 21
781 H6 2.388 -1.387 0.187 ETKDGv3 22
781 H7 0.022 1.309 1.288 ETKDGv3 23
781 H8 -2.196 2.330 1.665 ETKDGv3 24
781 H9 -4.559 2.287 1.247 ETKDGv3 25
781 H10 -5.607 0.560 -0.255 ETKDGv3 26
781 H11 -4.026 -2.077 -2.034 ETKDGv3 27
781 H12 -1.923 -2.202 -1.659 ETKDGv3 28
781 H13 0.534 -2.173 -1.221 ETKDGv3 29
#