data_78W
#
_chem_comp.id 78W
_chem_comp.name
"2-oxidanylidenepropyl ~{N}-(2-chloranyl-6-fluoranyl-phenyl)carbonyl-~{N}'-(4-chlorophenyl)carbamimidothioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H13 Cl2 F N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-09-14
_chem_comp.pdbx_modified_date 2016-10-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 399.267
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 78W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LVO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
78W C1 C1 C 0 1 Y N N N N N -12.786 40.595 -12.467 -1.004 2.101 1.056 C1 78W 1
78W C3 C2 C 0 1 Y N N N N N -13.869 39.458 -10.633 -0.656 3.116 -1.107 C3 78W 2
78W C4 C3 C 0 1 Y N N N N N -14.877 39.024 -11.466 -1.928 3.646 -1.056 C4 78W 3
78W C5 C4 C 0 1 Y N N N N N -14.821 39.406 -12.794 -2.733 3.416 0.047 C5 78W 4
78W C6 C5 C 0 1 Y N N N N N -13.797 40.181 -13.308 -2.272 2.641 1.098 C6 78W 5
78W C9 C6 C 0 1 N N N N N N -11.002 39.932 -9.639 1.255 0.516 0.048 C9 78W 6
78W C13 C7 C 0 1 Y N N N N N -9.485 35.484 -10.151 -1.337 -2.950 1.462 C13 78W 7
78W C14 C8 C 0 1 Y N N N N N -9.789 34.130 -10.191 -2.431 -3.794 1.518 C14 78W 8
78W S21 S1 S 0 1 N N N N N N -9.916 40.725 -8.645 2.884 -0.145 0.155 S21 78W 9
78W C2 C9 C 0 1 Y N N N N N -12.823 40.223 -11.139 -0.184 2.338 -0.049 C2 78W 10
78W N10 N1 N 0 1 N N N N N N -11.051 38.602 -9.736 0.164 -0.325 0.114 N10 78W 11
78W C22 C10 C 0 1 N N N N N N -8.298 40.760 -9.357 3.852 1.378 0.014 C22 78W 12
78W N8 N2 N 0 1 N N N N N N -11.818 40.662 -10.268 1.079 1.809 -0.094 N8 78W 13
78W CL1 CL1 CL 0 0 N N N N N N -16.112 38.897 -13.898 -4.333 4.087 0.104 CL1 78W 14
78W C11 C11 C 0 1 N N N N N N -10.093 37.777 -9.292 0.343 -1.660 0.150 C11 78W 15
78W O20 O1 O 0 1 N N N N N N -8.998 38.086 -8.877 1.467 -2.123 0.124 O20 78W 16
78W C12 C12 C 0 1 Y N N N N N -10.348 36.331 -9.372 -0.824 -2.560 0.220 C12 78W 17
78W C17 C13 C 0 1 Y N N N N N -11.434 35.692 -8.663 -1.423 -3.027 -0.953 C17 78W 18
78W CL2 CL2 CL 0 0 N N N N N N -12.431 36.747 -7.731 -0.796 -2.550 -2.500 CL2 78W 19
78W C16 C14 C 0 1 Y N N N N N -11.692 34.345 -8.726 -2.515 -3.868 -0.879 C16 78W 20
78W C15 C15 C 0 1 Y N N N N N -10.858 33.562 -9.493 -3.017 -4.251 0.352 C15 78W 21
78W F1 F1 F 0 1 N N N N N N -8.477 36.102 -10.797 -0.769 -2.500 2.602 F1 78W 22
78W H1 H1 H 0 1 N N N N N N -11.976 41.202 -12.843 -0.644 1.500 1.878 H1 78W 23
78W H2 H2 H 0 1 N N N N N N -13.891 39.203 -9.584 -0.026 3.302 -1.965 H2 78W 24
78W H3 H3 H 0 1 N N N N N N -15.682 38.407 -11.095 -2.295 4.248 -1.874 H3 78W 25
78W H4 H4 H 0 1 N N N N N N -13.790 40.458 -14.352 -2.908 2.459 1.952 H4 78W 26
78W H5 H5 H 0 1 N N N N N N -9.168 33.483 -10.792 -2.829 -4.097 2.475 H5 78W 27
78W H6 H6 H 0 1 N N N N N N -11.855 38.194 -10.168 -0.733 0.045 0.135 H6 78W 28
78W H7 H7 H 0 1 N N N N N N -8.305 40.963 -10.438 3.631 1.861 -0.938 H7 78W 29
78W H8 H8 H 0 1 N N N N N N -7.620 41.466 -8.856 3.592 2.050 0.831 H8 78W 30
78W H10 H10 H 0 1 N N N N N N -12.524 33.912 -8.190 -2.979 -4.230 -1.786 H10 78W 31
78W H11 H11 H 0 1 N N N N N N -11.032 32.498 -9.556 -3.872 -4.909 0.402 H11 78W 32
78W C7 C16 C 0 1 N N N N N N ? ? ? 5.321 1.048 0.081 C7 78W 33
78W C8 C17 C 0 1 N N N N N N ? ? ? 6.345 2.149 -0.014 C8 78W 34
78W O1 O2 O 0 1 N N N N N N ? ? ? 5.677 -0.098 0.212 O1 78W 35
78W H9 H9 H 0 1 N N N N N N ? ? ? 6.570 2.524 0.985 H9 78W 36
78W H12 H12 H 0 1 N N N N N N ? ? ? 7.256 1.760 -0.469 H12 78W 37
78W H13 H13 H 0 1 N N N N N N ? ? ? 5.951 2.961 -0.626 H13 78W 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
78W CL1 C5 SING N N 1
78W C6 C5 DOUB Y N 2
78W C6 C1 SING Y N 3
78W C5 C4 SING Y N 4
78W C1 C2 DOUB Y N 5
78W C4 C3 DOUB Y N 6
78W C2 C3 SING Y N 7
78W C2 N8 SING N N 8
78W F1 C13 SING N N 9
78W N8 C9 DOUB N N 10
78W C14 C13 DOUB Y N 11
78W C14 C15 SING Y N 12
78W C13 C12 SING Y N 13
78W N10 C9 SING N N 14
78W N10 C11 SING N N 15
78W C9 S21 SING N N 16
78W C15 C16 DOUB Y N 17
78W C12 C11 SING N N 18
78W C12 C17 DOUB Y N 19
78W C22 S21 SING N N 20
78W C11 O20 DOUB N N 21
78W C16 C17 SING Y N 22
78W C17 CL2 SING N N 23
78W C1 H1 SING N N 24
78W C3 H2 SING N N 25
78W C4 H3 SING N N 26
78W C6 H4 SING N N 27
78W C14 H5 SING N N 28
78W N10 H6 SING N N 29
78W C22 H7 SING N N 30
78W C22 H8 SING N N 31
78W C16 H10 SING N N 32
78W C15 H11 SING N N 33
78W C22 C7 SING N N 34
78W C7 C8 SING N N 35
78W C7 O1 DOUB N N 36
78W C8 H9 SING N N 37
78W C8 H12 SING N N 38
78W C8 H13 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
78W InChI InChI 1.03 InChI=1S/C17H13Cl2FN2O2S/c1-10(23)9-25-17(21-12-7-5-11(18)6-8-12)22-16(24)15-13(19)3-2-4-14(15)20/h2-8H,9H2,1H3,(H,21,22,24)
78W InChIKey InChI 1.03 WKKVCWKOLYDIGO-UHFFFAOYSA-N
78W SMILES_CANONICAL CACTVS 3.385 CC(=O)CSC(NC(=O)c1c(F)cccc1Cl)=Nc2ccc(Cl)cc2
78W SMILES CACTVS 3.385 CC(=O)CSC(NC(=O)c1c(F)cccc1Cl)=Nc2ccc(Cl)cc2
78W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 CC(=O)CS/C(=N/c1ccc(cc1)Cl)/NC(=O)c2c(cccc2Cl)F
78W SMILES "OpenEye OEToolkits" 2.0.5 CC(=O)CSC(=Nc1ccc(cc1)Cl)NC(=O)c2c(cccc2Cl)F
#
_pdbx_chem_comp_identifier.comp_id 78W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
"2-oxidanylidenepropyl ~{N}-(2-chloranyl-6-fluoranyl-phenyl)carbonyl-~{N}'-(4-chlorophenyl)carbamimidothioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
78W 'Create component' 2016-09-14 EBI
78W 'Initial release' 2016-10-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
78W C1 C 10.794 3.000 1
78W C3 C 8.196 3.000 2
78W C4 C 8.196 4.500 3
78W C5 C 9.495 5.250 4
78W C6 C 10.794 4.500 5
78W C9 C 8.196 0.000 6
78W C13 C 8.196 -4.500 7
78W C14 C 8.196 -6.000 8
78W S21 S 6.897 0.750 9
78W C2 C 9.495 2.250 10
78W N10 N 8.196 -1.500 11
78W C22 C 5.598 0.000 12
78W N8 N 9.495 0.750 13
78W CL1 Cl 9.495 6.750 14
78W C11 C 6.897 -2.250 15
78W O20 O 5.598 -1.500 16
78W C12 C 6.897 -3.750 17
78W C17 C 5.598 -4.500 18
78W CL2 Cl 4.299 -3.750 19
78W C16 C 5.598 -6.000 20
78W C15 C 6.897 -6.750 21
78W F1 F 9.495 -3.750 22
78W C7 C 4.299 0.750 23
78W C8 C 4.299 2.250 24
78W O1 O 3.000 0.000 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
78W CL1 C5 SINGLE NONE 1
78W C6 C5 SINGLE NONE 2
78W C6 C1 DOUBLE NONE 3
78W C5 C4 DOUBLE NONE 4
78W C1 C2 SINGLE NONE 5
78W C4 C3 SINGLE NONE 6
78W C2 C3 DOUBLE NONE 7
78W C2 N8 SINGLE ENDUPRIGHT 8
78W F1 C13 SINGLE NONE 9
78W N8 C9 DOUBLE NONE 10
78W C14 C13 DOUBLE NONE 11
78W C14 C15 SINGLE NONE 12
78W C13 C12 SINGLE NONE 13
78W N10 C9 SINGLE ENDUPRIGHT 14
78W N10 C11 SINGLE NONE 15
78W C9 S21 SINGLE ENDUPRIGHT 16
78W C15 C16 DOUBLE NONE 17
78W C12 C11 SINGLE NONE 18
78W C12 C17 DOUBLE NONE 19
78W C22 S21 SINGLE NONE 20
78W C11 O20 DOUBLE NONE 21
78W C16 C17 SINGLE NONE 22
78W C17 CL2 SINGLE NONE 23
78W C22 C7 SINGLE NONE 24
78W C7 C8 SINGLE NONE 25
78W C7 O1 DOUBLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
78W MurckoScaffold S1 scaffold O=C(N/C=N\c1ccccc1)c1ccccc1 InChI=1S/C14H12N2O/c17-14(12-7-3-1-4-8-12)16-11-15-13-9-5-2-6-10-13/h1-11H,(H,15,16,17) NJKNLRZSXHGLGT-UHFFFAOYSA-N
78W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
78W phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
78W C1 S1 1
78W C3 S1 1
78W C4 S1 1
78W C5 S1 1
78W C6 S1 1
78W C9 S1 1
78W C13 S1 1
78W C14 S1 1
78W C2 S1 1
78W N10 S1 1
78W N8 S1 1
78W C11 S1 1
78W O20 S1 1
78W C12 S1 1
78W C17 S1 1
78W C16 S1 1
78W C15 S1 1
78W N10 F1 1
78W C11 F1 1
78W O20 F1 1
78W C12 F1 1
78W C1 F2 1
78W C6 F2 1
78W C5 F2 1
78W C4 F2 1
78W C3 F2 1
78W C2 F2 1
78W C13 F2 2
78W C14 F2 2
78W C15 F2 2
78W C16 F2 2
78W C17 F2 2
78W C12 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 78W
_pdbe_chem_comp_rdkit_properties.exactmw 398.006
_pdbe_chem_comp_rdkit_properties.amw 399.274
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.118
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 176.299
_pdbe_chem_comp_rdkit_properties.tpsa 58.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.437
_pdbe_chem_comp_rdkit_properties.CrippenMR 99.472
_pdbe_chem_comp_rdkit_properties.chi0v 14.081
_pdbe_chem_comp_rdkit_properties.chi1v 7.600
_pdbe_chem_comp_rdkit_properties.chi2v 3.343
_pdbe_chem_comp_rdkit_properties.chi3v 3.343
_pdbe_chem_comp_rdkit_properties.chi4v 2.053
_pdbe_chem_comp_rdkit_properties.chi0n 24.753
_pdbe_chem_comp_rdkit_properties.chi1n 12.475
_pdbe_chem_comp_rdkit_properties.chi2n 2.218
_pdbe_chem_comp_rdkit_properties.chi3n 2.218
_pdbe_chem_comp_rdkit_properties.chi4n 1.298
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.890
_pdbe_chem_comp_rdkit_properties.kappa1 8.203
_pdbe_chem_comp_rdkit_properties.kappa2 8.988
_pdbe_chem_comp_rdkit_properties.kappa3 5.846
_pdbe_chem_comp_rdkit_properties.Phi 2.949
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
78W UniChem PDBe 78W
78W UniChem ZINC ZINC000013467764
78W UniChem eMolecules 26475757
78W UniChem PubChem 135472998
78W UniChem Mcule MCULE-5729788720
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
78W C1 1.239 2.083 -0.899 ETKDGv3 1
78W C3 1.392 2.453 1.510 ETKDGv3 2
78W C4 0.764 3.774 1.302 ETKDGv3 3
78W C5 0.418 4.168 0.069 ETKDGv3 4
78W C6 0.679 3.284 -1.086 ETKDGv3 5
78W C9 1.940 -0.768 0.100 ETKDGv3 6
78W C13 -1.716 -2.045 -2.168 ETKDGv3 7
78W C14 -2.701 -2.222 -3.056 ETKDGv3 8
78W S21 2.978 -2.193 0.415 ETKDGv3 9
78W C2 1.590 1.625 0.473 ETKDGv3 10
78W N10 0.835 -0.904 -0.804 ETKDGv3 11
78W C22 1.946 -2.832 1.779 ETKDGv3 12
78W N8 2.215 0.354 0.702 ETKDGv3 13
78W CL1 -0.334 5.732 -0.182 ETKDGv3 14
78W C11 -0.518 -0.603 -0.424 ETKDGv3 15
78W O20 -0.773 -0.202 0.744 ETKDGv3 16
78W C12 -1.622 -0.778 -1.392 ETKDGv3 17
78W C17 -2.558 0.182 -1.583 ETKDGv3 18
78W CL2 -2.514 1.728 -0.737 ETKDGv3 19
78W C16 -3.641 -0.029 -2.568 ETKDGv3 20
78W C15 -3.706 -1.165 -3.270 ETKDGv3 21
78W F1 -0.833 -3.053 -1.953 ETKDGv3 22
78W H1 1.451 1.458 -1.756 ETKDGv3 23
78W H2 1.672 2.151 2.511 ETKDGv3 24
78W H3 0.584 4.418 2.154 ETKDGv3 25
78W H4 0.425 3.612 -2.086 ETKDGv3 26
78W H5 -2.774 -3.148 -3.612 ETKDGv3 27
78W H6 1.015 -1.378 -1.716 ETKDGv3 28
78W H7 2.268 -3.869 2.007 ETKDGv3 29
78W H8 0.883 -2.875 1.457 ETKDGv3 30
78W H10 -4.383 0.743 -2.727 ETKDGv3 31
78W H11 -4.500 -1.314 -3.991 ETKDGv3 32
78W C7 2.115 -1.990 3.014 ETKDGv3 33
78W C8 0.956 -1.264 3.630 ETKDGv3 34
78W O1 3.216 -1.902 3.535 ETKDGv3 35
78W H9 1.153 -0.172 3.618 ETKDGv3 36
78W H12 0.824 -1.598 4.681 ETKDGv3 37
78W H13 0.014 -1.461 3.077 ETKDGv3 38
#