data_7BQ
#
_chem_comp.id 7BQ
_chem_comp.name
"(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{R})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H46 N6 O15"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-09-29
_chem_comp.pdbx_modified_date 2017-05-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 754.739
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7BQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5LZI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7BQ C4 C1 C 0 1 N N R N N N 98.416 94.418 37.848 -9.465 2.875 -0.160 C4 7BQ 1
7BQ C5 C2 C 0 1 N N R N N N 98.507 95.097 36.487 -9.021 1.410 -0.172 C5 7BQ 2
7BQ C6 C3 C 0 1 N N N N N N 97.433 94.556 35.560 -9.863 0.630 -1.184 C6 7BQ 3
7BQ C3 C4 C 0 1 N N R N N N 99.443 95.046 38.798 -8.578 3.661 0.810 C3 7BQ 4
7BQ O2 O1 O 0 1 N N N N N N 100.336 97.091 39.650 -6.271 4.169 1.332 O2 7BQ 5
7BQ C2 C5 C 0 1 N N R N N N 99.308 96.547 38.779 -7.113 3.500 0.391 C2 7BQ 6
7BQ O3 O2 O 0 1 N N N N N N 99.153 94.508 40.106 -8.936 5.044 0.773 O3 7BQ 7
7BQ O4 O3 O 0 1 N N N N N N 97.084 94.583 38.410 -9.337 3.423 -1.474 O4 7BQ 8
7BQ O6 O4 O 0 1 N N N N N N 97.460 95.258 34.328 -9.530 -0.757 -1.113 O6 7BQ 9
7BQ O5 O5 O 0 1 N N N N N N 98.342 96.553 36.614 -7.643 1.334 -0.539 O5 7BQ 10
7BQ C1 C6 C 0 1 N N S N N N 99.474 97.056 37.349 -6.761 2.010 0.359 C1 7BQ 11
7BQ CBQ C7 C 0 1 N N N N N N 99.502 98.584 37.262 -5.317 1.838 -0.117 CBQ 7BQ 12
7BQ CBE C8 C 0 1 N N N N N N 100.028 98.954 35.907 -4.925 0.361 -0.033 CBE 7BQ 13
7BQ NAA N1 N 0 1 N N N N N N 100.091 100.442 35.819 -3.543 0.196 -0.488 NAA 7BQ 14
7BQ C C9 C 0 1 N N N N N N 100.985 101.074 36.643 -2.979 -1.028 -0.501 C 7BQ 15
7BQ O O6 O 0 1 N N N N N N 101.776 100.448 37.332 -3.616 -1.993 -0.136 O 7BQ 16
7BQ CA C10 C 0 1 N N R N N N 101.117 102.608 36.709 -1.557 -1.198 -0.970 CA 7BQ 17
7BQ N N2 N 0 1 N N N N N N 100.042 103.340 37.460 -1.330 -2.595 -1.345 N 7BQ 18
7BQ CBS C11 C 0 1 N N N N N N 99.121 104.224 36.995 -1.491 -3.573 -0.431 CBS 7BQ 19
7BQ OBV O7 O 0 1 N N N N N N 98.926 104.493 35.814 -1.823 -3.296 0.702 OBV 7BQ 20
7BQ CBT C12 C 0 1 N N N N N N 98.321 104.874 38.129 -1.257 -5.011 -0.817 CBT 7BQ 21
7BQ CBU C13 C 0 1 Y N N N N N 98.820 106.191 38.216 -1.502 -5.898 0.377 CBU 7BQ 22
7BQ CBW C14 C 0 1 Y N N N N N 100.048 106.501 38.763 -2.765 -6.407 0.612 CBW 7BQ 23
7BQ CBX C15 C 0 1 Y N N N N N 100.516 107.805 38.776 -2.990 -7.220 1.707 CBX 7BQ 24
7BQ CBY C16 C 0 1 Y N N N N N 99.736 108.831 38.264 -1.951 -7.524 2.567 CBY 7BQ 25
7BQ CBZ C17 C 0 1 Y N N N N N 98.498 108.525 37.745 -0.688 -7.014 2.332 CBZ 7BQ 26
7BQ CCA C18 C 0 1 Y N N N N N 98.036 107.214 37.717 -0.462 -6.206 1.234 CCA 7BQ 27
7BQ CB C19 C 0 1 N N N N N N 101.446 103.156 35.400 -0.599 -0.810 0.158 CB 7BQ 28
7BQ CG C20 C 0 1 Y N N N N N 102.705 102.515 34.741 0.820 -0.862 -0.348 CG 7BQ 29
7BQ CD1 C21 C 0 1 Y N N N N N 102.724 101.292 34.171 1.732 0.137 -0.304 CD1 7BQ 30
7BQ ND2 N3 N 0 1 Y N N N N N 103.866 103.078 34.544 1.427 -1.906 -0.923 ND2 7BQ 31
7BQ NAJ N4 N 0 1 Y N N N N N 104.644 102.148 33.871 2.634 -1.574 -1.221 NAJ 7BQ 32
7BQ NAI N5 N 0 1 Y N N N N N 103.923 101.060 33.635 2.859 -0.357 -0.867 NAI 7BQ 33
7BQ CAR C22 C 0 1 N N R N N N 104.443 99.800 32.950 4.120 0.368 -1.044 CAR 7BQ 34
7BQ CBA C23 C 0 1 N N N N N N 104.567 98.522 33.872 3.885 1.582 -1.906 CBA 7BQ 35
7BQ OBC O8 O 0 1 N N N N N N 103.500 97.908 34.182 4.084 1.526 -3.096 OBC 7BQ 36
7BQ OBB O9 O 0 1 N N N N N N 105.692 98.209 34.337 3.453 2.726 -1.351 OBB 7BQ 37
7BQ OAS O10 O 0 1 N N N N N N 103.422 99.776 32.016 4.616 0.779 0.232 OAS 7BQ 38
7BQ CAQ C24 C 0 1 N N N N N N 105.713 100.133 32.293 5.145 -0.546 -1.719 CAQ 7BQ 39
7BQ CAP C25 C 0 1 N N S N N N 105.962 98.995 31.341 6.477 0.199 -1.845 CAP 7BQ 40
7BQ OBD O11 O 0 1 N N N N N N 107.240 99.172 30.680 7.460 -0.672 -2.410 OBD 7BQ 41
7BQ CAO C26 C 0 1 N N R N N N 104.863 98.874 30.371 6.930 0.652 -0.454 CAO 7BQ 42
7BQ NAN N6 N 0 1 N N N N N N 105.194 97.696 29.528 8.166 1.430 -0.571 NAN 7BQ 43
7BQ CAL C27 C 0 1 N N N N N N 104.823 97.605 28.254 9.358 0.802 -0.605 CAL 7BQ 44
7BQ OAM O12 O 0 1 N N N N N N 104.209 98.457 27.641 9.407 -0.408 -0.539 OAM 7BQ 45
7BQ CAK C28 C 0 1 N N N N N N 105.244 96.309 27.556 10.629 1.602 -0.725 CAK 7BQ 46
7BQ CAT C29 C 0 1 N N R N N N 103.561 98.695 31.119 5.836 1.521 0.172 CAT 7BQ 47
7BQ CAU C30 C 0 1 N N R N N N 102.271 98.716 30.320 6.255 1.929 1.586 CAU 7BQ 48
7BQ OAZ O13 O 0 1 N N N N N N 102.123 99.891 29.481 6.560 0.759 2.348 OAZ 7BQ 49
7BQ CAV C31 C 0 1 N N R N N N 101.124 98.709 31.314 5.110 2.691 2.257 CAV 7BQ 50
7BQ OAY O14 O 0 1 N N N N N N 101.348 97.785 32.375 4.805 3.860 1.495 OAY 7BQ 51
7BQ CAW C32 C 0 1 N N N N N N 99.794 98.433 30.703 5.529 3.099 3.671 CAW 7BQ 52
7BQ OAX O15 O 0 1 N N N N N N 98.866 99.176 31.476 4.422 3.707 4.339 OAX 7BQ 53
7BQ H1 H1 H 0 1 N N N N N N 98.645 93.348 37.732 -10.504 2.940 0.162 H1 7BQ 54
7BQ H2 H2 H 0 1 N N N N N N 99.493 94.879 36.050 -9.157 0.981 0.821 H2 7BQ 55
7BQ H3 H3 H 0 1 N N N N N N 96.447 94.683 36.031 -10.921 0.762 -0.955 H3 7BQ 56
7BQ H4 H4 H 0 1 N N N N N N 97.616 93.487 35.375 -9.660 1.002 -2.188 H4 7BQ 57
7BQ H5 H5 H 0 1 N N N N N N 100.456 94.761 38.479 -8.714 3.277 1.821 H5 7BQ 58
7BQ H6 H6 H 0 1 N N N N N N 100.212 96.761 40.532 -6.443 5.118 1.408 H6 7BQ 59
7BQ H7 H7 H 0 1 N N N N N N 98.311 96.829 39.148 -6.968 3.931 -0.599 H7 7BQ 60
7BQ H8 H8 H 0 1 N N N N N N 99.764 94.866 40.739 -9.854 5.219 1.021 H8 7BQ 61
7BQ H9 H9 H 0 1 N N N N N N 97.042 94.155 39.257 -9.872 2.973 -2.142 H9 7BQ 62
7BQ H10 H10 H 0 1 N N N N N N 96.786 94.915 33.753 -10.026 -1.313 -1.728 H10 7BQ 63
7BQ H11 H11 H 0 1 N N N N N N 100.409 96.655 36.931 -6.867 1.590 1.358 H11 7BQ 64
7BQ H12 H12 H 0 1 N N N N N N 100.160 98.992 38.043 -5.231 2.178 -1.149 H12 7BQ 65
7BQ H13 H13 H 0 1 N N N N N N 98.486 98.985 37.392 -4.653 2.427 0.516 H13 7BQ 66
7BQ H14 H14 H 0 1 N N N N N N 99.357 98.563 35.128 -5.011 0.021 0.999 H14 7BQ 67
7BQ H15 H15 H 0 1 N N N N N N 101.034 98.530 35.770 -5.589 -0.227 -0.666 H15 7BQ 68
7BQ H16 H16 H 0 1 N N N N N N 99.508 100.954 35.188 -3.033 0.968 -0.781 H16 7BQ 69
7BQ H17 H17 H 0 1 N N N N N N 102.023 102.768 37.312 -1.380 -0.556 -1.833 H17 7BQ 70
7BQ H18 H18 H 0 1 N N N N N N 99.998 103.150 38.441 -1.064 -2.818 -2.251 H18 7BQ 71
7BQ H19 H19 H 0 1 N N N N N N 97.247 104.882 37.890 -1.940 -5.287 -1.621 H19 7BQ 72
7BQ H20 H20 H 0 1 N N N N N N 98.482 104.336 39.075 -0.228 -5.134 -1.156 H20 7BQ 73
7BQ H21 H21 H 0 1 N N N N N N 100.654 105.715 39.188 -3.577 -6.170 -0.060 H21 7BQ 74
7BQ H22 H22 H 0 1 N N N N N N 101.491 108.023 39.186 -3.977 -7.618 1.890 H22 7BQ 75
7BQ H23 H23 H 0 1 N N N N N N 100.093 109.850 38.272 -2.127 -8.159 3.423 H23 7BQ 76
7BQ H24 H24 H 0 1 N N N N N N 97.876 109.316 37.353 0.124 -7.251 3.004 H24 7BQ 77
7BQ H25 H25 H 0 1 N N N N N N 97.062 106.995 37.304 0.525 -5.808 1.050 H25 7BQ 78
7BQ H26 H26 H 0 1 N N N N N N 101.626 104.235 35.513 -0.826 0.200 0.498 H26 7BQ 79
7BQ H27 H27 H 0 1 N N N N N N 100.587 102.996 34.732 -0.714 -1.507 0.988 H27 7BQ 80
7BQ H28 H28 H 0 1 N N N N N N 101.892 100.604 34.152 1.589 1.129 0.098 H28 7BQ 81
7BQ H29 H29 H 0 1 N N N N N N 105.597 97.471 34.928 3.317 3.477 -1.944 H29 7BQ 82
7BQ H30 H30 H 0 1 N N N N N N 106.525 100.205 33.032 5.285 -1.444 -1.116 H30 7BQ 83
7BQ H31 H31 H 0 1 N N N N N N 105.629 101.084 31.747 4.787 -0.826 -2.710 H31 7BQ 84
7BQ H32 H32 H 0 1 N N N N N N 106.002 98.067 31.931 6.349 1.069 -2.489 H32 7BQ 85
7BQ H33 H33 H 0 1 N N N N N N 107.927 99.247 31.332 7.234 -1.002 -3.290 H33 7BQ 86
7BQ H34 H34 H 0 1 N N N N N N 104.808 99.778 29.747 7.107 -0.221 0.174 H34 7BQ 87
7BQ H35 H35 H 0 1 N N N N N N 105.715 96.944 29.933 8.127 2.398 -0.624 H35 7BQ 88
7BQ H36 H36 H 0 1 N N N N N N 104.905 96.329 26.510 10.713 2.280 0.124 H36 7BQ 89
7BQ H37 H37 H 0 1 N N N N N N 106.340 96.216 27.585 11.484 0.926 -0.737 H37 7BQ 90
7BQ H38 H38 H 0 1 N N N N N N 104.790 95.450 28.072 10.609 2.179 -1.650 H38 7BQ 91
7BQ H39 H39 H 0 1 N N N N N N 103.608 97.749 31.679 5.688 2.414 -0.435 H39 7BQ 92
7BQ H40 H40 H 0 1 N N N N N N 102.216 97.806 29.704 7.136 2.568 1.534 H40 7BQ 93
7BQ H41 H41 H 0 1 N N N N N N 101.299 99.843 29.010 5.820 0.143 2.437 H41 7BQ 94
7BQ H42 H42 H 0 1 N N N N N N 101.076 99.718 31.750 4.229 2.051 2.309 H42 7BQ 95
7BQ H43 H43 H 0 1 N N N N N N 102.134 98.030 32.848 5.545 4.477 1.407 H43 7BQ 96
7BQ H44 H44 H 0 1 N N N N N N 99.775 98.765 29.654 5.847 2.215 4.225 H44 7BQ 97
7BQ H45 H45 H 0 1 N N N N N N 99.563 97.359 30.752 6.355 3.808 3.615 H45 7BQ 98
7BQ H46 H46 H 0 1 N N N N N N 97.990 99.042 31.135 4.616 3.991 5.243 H46 7BQ 99
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7BQ CAK CAL SING N N 1
7BQ OAM CAL DOUB N N 2
7BQ CAL NAN SING N N 3
7BQ OAZ CAU SING N N 4
7BQ NAN CAO SING N N 5
7BQ CAU CAT SING N N 6
7BQ CAU CAV SING N N 7
7BQ CAO CAT SING N N 8
7BQ CAO CAP SING N N 9
7BQ OBD CAP SING N N 10
7BQ CAW CAV SING N N 11
7BQ CAW OAX SING N N 12
7BQ CAT OAS SING N N 13
7BQ CAV OAY SING N N 14
7BQ CAP CAQ SING N N 15
7BQ OAS CAR SING N N 16
7BQ CAQ CAR SING N N 17
7BQ CAR NAI SING N N 18
7BQ CAR CBA SING N N 19
7BQ NAI NAJ SING Y N 20
7BQ NAI CD1 SING Y N 21
7BQ NAJ ND2 DOUB Y N 22
7BQ CBA OBC DOUB N N 23
7BQ CBA OBB SING N N 24
7BQ CD1 CG DOUB Y N 25
7BQ O6 C6 SING N N 26
7BQ ND2 CG SING Y N 27
7BQ CG CB SING N N 28
7BQ CB CA SING N N 29
7BQ C6 C5 SING N N 30
7BQ OBV CBS DOUB N N 31
7BQ NAA CBE SING N N 32
7BQ NAA C SING N N 33
7BQ CBE CBQ SING N N 34
7BQ C5 O5 SING N N 35
7BQ C5 C4 SING N N 36
7BQ O5 C1 SING N N 37
7BQ C CA SING N N 38
7BQ C O DOUB N N 39
7BQ CA N SING N N 40
7BQ CBS N SING N N 41
7BQ CBS CBT SING N N 42
7BQ CBQ C1 SING N N 43
7BQ C1 C2 SING N N 44
7BQ CCA CBZ DOUB Y N 45
7BQ CCA CBU SING Y N 46
7BQ CBZ CBY SING Y N 47
7BQ C4 O4 SING N N 48
7BQ C4 C3 SING N N 49
7BQ CBT CBU SING N N 50
7BQ CBU CBW DOUB Y N 51
7BQ CBY CBX DOUB Y N 52
7BQ CBW CBX SING Y N 53
7BQ C2 C3 SING N N 54
7BQ C2 O2 SING N N 55
7BQ C3 O3 SING N N 56
7BQ C4 H1 SING N N 57
7BQ C5 H2 SING N N 58
7BQ C6 H3 SING N N 59
7BQ C6 H4 SING N N 60
7BQ C3 H5 SING N N 61
7BQ O2 H6 SING N N 62
7BQ C2 H7 SING N N 63
7BQ O3 H8 SING N N 64
7BQ O4 H9 SING N N 65
7BQ O6 H10 SING N N 66
7BQ C1 H11 SING N N 67
7BQ CBQ H12 SING N N 68
7BQ CBQ H13 SING N N 69
7BQ CBE H14 SING N N 70
7BQ CBE H15 SING N N 71
7BQ NAA H16 SING N N 72
7BQ CA H17 SING N N 73
7BQ N H18 SING N N 74
7BQ CBT H19 SING N N 75
7BQ CBT H20 SING N N 76
7BQ CBW H21 SING N N 77
7BQ CBX H22 SING N N 78
7BQ CBY H23 SING N N 79
7BQ CBZ H24 SING N N 80
7BQ CCA H25 SING N N 81
7BQ CB H26 SING N N 82
7BQ CB H27 SING N N 83
7BQ CD1 H28 SING N N 84
7BQ OBB H29 SING N N 85
7BQ CAQ H30 SING N N 86
7BQ CAQ H31 SING N N 87
7BQ CAP H32 SING N N 88
7BQ OBD H33 SING N N 89
7BQ CAO H34 SING N N 90
7BQ NAN H35 SING N N 91
7BQ CAK H36 SING N N 92
7BQ CAK H37 SING N N 93
7BQ CAK H38 SING N N 94
7BQ CAT H39 SING N N 95
7BQ CAU H40 SING N N 96
7BQ OAZ H41 SING N N 97
7BQ CAV H42 SING N N 98
7BQ OAY H43 SING N N 99
7BQ CAW H44 SING N N 100
7BQ CAW H45 SING N N 101
7BQ OAX H46 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7BQ InChI InChI 1.03 InChI=1S/C32H46N6O15/c1-15(41)34-24-19(42)11-32(31(50)51,53-29(24)25(45)20(43)13-39)38-12-17(36-37-38)10-18(35-23(44)9-16-5-3-2-4-6-16)30(49)33-8-7-21-26(46)28(48)27(47)22(14-40)52-21/h2-6,12,18-22,24-29,39-40,42-43,45-48H,7-11,13-14H2,1H3,(H,33,49)(H,34,41)(H,35,44)(H,50,51)/t18-,19+,20-,21+,22-,24-,25-,26+,27+,28-,29-,32-/m1/s1
7BQ InChIKey InChI 1.03 VJJPXKHAIAQVCK-WOQXIOLNSA-N
7BQ SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@@H]1[C@@H](O)C[C@](O[C@H]1[C@H](O)[C@H](O)CO)(n2cc(C[C@@H](NC(=O)Cc3ccccc3)C(=O)NCC[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)nn2)C(O)=O
7BQ SMILES CACTVS 3.385 CC(=O)N[CH]1[CH](O)C[C](O[CH]1[CH](O)[CH](O)CO)(n2cc(C[CH](NC(=O)Cc3ccccc3)C(=O)NCC[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)nn2)C(O)=O
7BQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)n2cc(nn2)C[C@H](C(=O)NCC[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)Cc4ccccc4)O
7BQ SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)n2cc(nn2)CC(C(=O)NCCC3C(C(C(C(O3)CO)O)O)O)NC(=O)Cc4ccccc4)O
#
_pdbx_chem_comp_identifier.comp_id 7BQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[(2~{R})-3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-2-(2-phenylethanoylamino)propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7BQ 'Create component' 2016-09-29 EBI
7BQ 'Initial release' 2017-05-31 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7BQ C4 C 12.884 -8.383 1
7BQ C5 C 13.542 -7.035 2
7BQ C6 C 15.038 -6.931 3
7BQ C3 C 11.388 -8.488 4
7BQ O2 O 9.053 -7.349 5
7BQ C2 C 10.549 -7.244 6
7BQ O3 O 10.730 -9.836 7
7BQ O4 O 13.723 -9.627 8
7BQ O6 O 15.877 -8.174 9
7BQ O5 O 12.703 -5.792 10
7BQ C1 C 11.207 -5.896 11
7BQ CBQ C 10.368 -4.653 12
7BQ CBE C 11.026 -3.304 13
7BQ NAA N 10.187 -2.061 14
7BQ C C 10.844 -0.713 15
7BQ O O 12.341 -0.608 16
7BQ CA C 10.005 0.531 17
7BQ N N 8.509 0.426 18
7BQ CBS C 7.670 1.670 19
7BQ OBV O 8.328 3.018 20
7BQ CBT C 6.174 1.565 21
7BQ CBU C 5.335 2.809 22
7BQ CBW C 3.839 2.704 23
7BQ CBX C 3.000 3.948 24
7BQ CBY C 3.658 5.296 25
7BQ CBZ C 5.154 5.401 26
7BQ CCA C 5.993 4.157 27
7BQ CB C 10.663 1.879 28
7BQ CG C 12.159 1.984 29
7BQ CD1 C 12.954 3.256 30
7BQ ND2 N 13.123 0.835 31
7BQ NAJ N 14.514 1.397 32
7BQ NAI N 14.410 2.893 33
7BQ CAR C 15.559 3.857 34
7BQ CBA C 16.309 2.558 35
7BQ OBC O 17.809 2.558 36
7BQ OBB O 16.048 1.081 37
7BQ OAS O 16.858 4.607 38
7BQ CAQ C 14.260 4.607 39
7BQ CAP C 14.260 6.107 40
7BQ OBD O 12.961 6.857 41
7BQ CAO C 15.559 6.857 42
7BQ NAN N 15.559 8.357 43
7BQ CAL C 14.260 9.107 44
7BQ OAM O 14.260 10.607 45
7BQ CAK C 12.961 8.357 46
7BQ CAT C 16.858 6.107 47
7BQ CAU C 18.157 6.857 48
7BQ OAZ O 18.157 8.357 49
7BQ CAV C 19.456 6.107 50
7BQ OAY O 19.456 4.607 51
7BQ CAW C 20.755 6.857 52
7BQ OAX O 22.054 6.107 53
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7BQ CAK CAL SINGLE NONE 1
7BQ OAM CAL DOUBLE NONE 2
7BQ CAL NAN SINGLE NONE 3
7BQ CAU OAZ SINGLE BEGINDASH 4
7BQ CAO NAN SINGLE BEGINWEDGE 5
7BQ CAU CAT SINGLE NONE 6
7BQ CAU CAV SINGLE NONE 7
7BQ CAO CAT SINGLE NONE 8
7BQ CAO CAP SINGLE NONE 9
7BQ CAP OBD SINGLE BEGINDASH 10
7BQ CAW CAV SINGLE NONE 11
7BQ CAW OAX SINGLE NONE 12
7BQ CAT OAS SINGLE BEGINDASH 13
7BQ CAV OAY SINGLE BEGINWEDGE 14
7BQ CAP CAQ SINGLE NONE 15
7BQ OAS CAR SINGLE NONE 16
7BQ CAQ CAR SINGLE NONE 17
7BQ CAR NAI SINGLE BEGINDASH 18
7BQ CAR CBA SINGLE NONE 19
7BQ NAI NAJ SINGLE NONE 20
7BQ NAI CD1 SINGLE NONE 21
7BQ NAJ ND2 DOUBLE NONE 22
7BQ CBA OBC DOUBLE NONE 23
7BQ CBA OBB SINGLE NONE 24
7BQ CD1 CG DOUBLE NONE 25
7BQ O6 C6 SINGLE NONE 26
7BQ ND2 CG SINGLE NONE 27
7BQ CG CB SINGLE NONE 28
7BQ CA CB SINGLE BEGINDASH 29
7BQ C5 C6 SINGLE BEGINDASH 30
7BQ OBV CBS DOUBLE NONE 31
7BQ NAA CBE SINGLE NONE 32
7BQ NAA C SINGLE NONE 33
7BQ CBE CBQ SINGLE NONE 34
7BQ C5 O5 SINGLE NONE 35
7BQ C5 C4 SINGLE NONE 36
7BQ O5 C1 SINGLE NONE 37
7BQ C CA SINGLE NONE 38
7BQ C O DOUBLE NONE 39
7BQ CA N SINGLE NONE 40
7BQ CBS N SINGLE NONE 41
7BQ CBS CBT SINGLE NONE 42
7BQ C1 CBQ SINGLE BEGINDASH 43
7BQ C1 C2 SINGLE NONE 44
7BQ CCA CBZ DOUBLE NONE 45
7BQ CCA CBU SINGLE NONE 46
7BQ CBZ CBY SINGLE NONE 47
7BQ C4 O4 SINGLE BEGINDASH 48
7BQ C4 C3 SINGLE NONE 49
7BQ CBT CBU SINGLE NONE 50
7BQ CBU CBW DOUBLE NONE 51
7BQ CBY CBX DOUBLE NONE 52
7BQ CBW CBX SINGLE NONE 53
7BQ C2 C3 SINGLE NONE 54
7BQ C2 O2 SINGLE BEGINWEDGE 55
7BQ C3 O3 SINGLE BEGINDASH 56
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7BQ MurckoScaffold S1 scaffold 'O=C(Cc1ccccc1)N[C@H](Cc1cn(C2CCCCO2)nn1)C(=O)NCC[C@H]1CCCCO1' InChI=1S/C25H35N5O4/c31-23(16-19-8-2-1-3-9-19)27-22(25(32)26-13-12-21-10-4-6-14-33-21)17-20-18-30(29-28-20)24-11-5-7-15-34-24/h1-3,8-9,18,21-22,24H,4-7,10-17H2,(H,26,32)(H,27,31)/t21-,22-,24?/m1/s1 NXOPIYVKXIMKCQ-GNLJQLLCSA-N
7BQ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
7BQ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
7BQ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7BQ C4 S1 1
7BQ C5 S1 1
7BQ C3 S1 1
7BQ C2 S1 1
7BQ O5 S1 1
7BQ C1 S1 1
7BQ CBQ S1 1
7BQ CBE S1 1
7BQ NAA S1 1
7BQ C S1 1
7BQ O S1 1
7BQ CA S1 1
7BQ N S1 1
7BQ CBS S1 1
7BQ OBV S1 1
7BQ CBT S1 1
7BQ CBU S1 1
7BQ CBW S1 1
7BQ CBX S1 1
7BQ CBY S1 1
7BQ CBZ S1 1
7BQ CCA S1 1
7BQ CB S1 1
7BQ CG S1 1
7BQ CD1 S1 1
7BQ ND2 S1 1
7BQ NAJ S1 1
7BQ NAI S1 1
7BQ CAR S1 1
7BQ OAS S1 1
7BQ CAQ S1 1
7BQ CAP S1 1
7BQ CAO S1 1
7BQ CAT S1 1
7BQ NAA F1 1
7BQ C F1 1
7BQ O F1 1
7BQ CA F1 1
7BQ N F1 2
7BQ CBS F1 2
7BQ OBV F1 2
7BQ CBT F1 2
7BQ NAN F1 3
7BQ CAL F1 3
7BQ OAM F1 3
7BQ CAK F1 3
7BQ O F2 1
7BQ C F2 1
7BQ CA F2 1
7BQ N F2 1
7BQ OBC F2 2
7BQ CBA F2 2
7BQ CAR F2 2
7BQ NAI F2 2
7BQ CBU F3 1
7BQ CCA F3 1
7BQ CBZ F3 1
7BQ CBY F3 1
7BQ CBX F3 1
7BQ CBW F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7BQ
_pdbe_chem_comp_rdkit_properties.exactmw 754.302
_pdbe_chem_comp_rdkit_properties.amw 754.747
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 21
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 12
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 25
_pdbe_chem_comp_rdkit_properties.NumHBD 12
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 53
_pdbe_chem_comp_rdkit_properties.NumAtoms 99
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 12
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 367.284
_pdbe_chem_comp_rdkit_properties.tpsa 335.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP -6.107
_pdbe_chem_comp_rdkit_properties.CrippenMR 174.475
_pdbe_chem_comp_rdkit_properties.chi0v 24.807
_pdbe_chem_comp_rdkit_properties.chi1v 12.883
_pdbe_chem_comp_rdkit_properties.chi2v 5.536
_pdbe_chem_comp_rdkit_properties.chi3v 5.536
_pdbe_chem_comp_rdkit_properties.chi4v 3.375
_pdbe_chem_comp_rdkit_properties.chi0n 70.807
_pdbe_chem_comp_rdkit_properties.chi1n 34.898
_pdbe_chem_comp_rdkit_properties.chi2n 5.536
_pdbe_chem_comp_rdkit_properties.chi3n 5.536
_pdbe_chem_comp_rdkit_properties.chi4n 3.375
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.160
_pdbe_chem_comp_rdkit_properties.kappa1 11.677
_pdbe_chem_comp_rdkit_properties.kappa2 18.249
_pdbe_chem_comp_rdkit_properties.kappa3 9.886
_pdbe_chem_comp_rdkit_properties.Phi 4.020
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7BQ UniChem PDBe 7BQ
7BQ UniChem PubChem 127021005
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7BQ C4 -10.040 0.115 1.216 ETKDGv3 1
7BQ C5 -9.027 1.290 1.443 ETKDGv3 2
7BQ C6 -9.414 2.224 2.599 ETKDGv3 3
7BQ C3 -9.415 -1.237 1.620 ETKDGv3 4
7BQ O2 -8.337 -2.038 -0.374 ETKDGv3 5
7BQ C2 -8.078 -1.451 0.877 ETKDGv3 6
7BQ O3 -9.185 -1.272 3.007 ETKDGv3 7
7BQ O4 -11.250 0.323 1.902 ETKDGv3 8
7BQ O6 -9.417 1.526 3.814 ETKDGv3 9
7BQ O5 -7.705 0.824 1.676 ETKDGv3 10
7BQ C1 -7.320 -0.107 0.679 ETKDGv3 11
7BQ CBQ -5.798 -0.321 0.750 ETKDGv3 12
7BQ CBE -5.029 0.966 0.426 ETKDGv3 13
7BQ NAA -3.589 0.733 0.505 ETKDGv3 14
7BQ C -2.865 0.030 -0.516 ETKDGv3 15
7BQ O -3.466 -0.397 -1.539 ETKDGv3 16
7BQ CA -1.395 -0.246 -0.343 ETKDGv3 17
7BQ N -0.701 -0.090 -1.627 ETKDGv3 18
7BQ CBS 0.334 0.880 -1.843 ETKDGv3 19
7BQ OBV 0.589 1.753 -0.969 ETKDGv3 20
7BQ CBT 1.090 0.893 -3.135 ETKDGv3 21
7BQ CBU 0.300 1.621 -4.187 ETKDGv3 22
7BQ CBW -0.535 0.955 -5.006 ETKDGv3 23
7BQ CBX -1.336 1.689 -6.008 ETKDGv3 24
7BQ CBY -1.245 3.022 -6.095 ETKDGv3 25
7BQ CBZ -0.343 3.761 -5.188 ETKDGv3 26
7BQ CCA 0.387 3.100 -4.282 ETKDGv3 27
7BQ CB -1.187 -1.667 0.208 ETKDGv3 28
7BQ CG 0.271 -1.992 0.328 ETKDGv3 29
7BQ CD1 1.115 -1.456 1.195 ETKDGv3 30
7BQ ND2 1.004 -2.742 -0.638 ETKDGv3 31
7BQ NAJ 2.237 -2.654 -0.341 ETKDGv3 32
7BQ NAI 2.419 -1.877 0.809 ETKDGv3 33
7BQ CAR 3.691 -1.246 1.177 ETKDGv3 34
7BQ CBA 3.761 -1.191 2.689 ETKDGv3 35
7BQ OBC 4.281 -2.143 3.333 ETKDGv3 36
7BQ OBB 3.190 -0.126 3.383 ETKDGv3 37
7BQ OAS 4.742 -2.077 0.683 ETKDGv3 38
7BQ CAQ 3.742 0.189 0.557 ETKDGv3 39
7BQ CAP 4.504 0.188 -0.771 ETKDGv3 40
7BQ OBD 3.819 -0.608 -1.704 ETKDGv3 41
7BQ CAO 5.940 -0.348 -0.554 ETKDGv3 42
7BQ NAN 6.831 0.778 -0.246 ETKDGv3 43
7BQ CAL 7.599 1.455 -1.250 ETKDGv3 44
7BQ OAM 7.545 1.089 -2.455 ETKDGv3 45
7BQ CAK 8.453 2.620 -0.870 ETKDGv3 46
7BQ CAT 5.988 -1.401 0.599 ETKDGv3 47
7BQ CAU 7.094 -2.470 0.390 ETKDGv3 48
7BQ OAZ 7.041 -3.406 1.439 ETKDGv3 49
7BQ CAV 8.537 -1.904 0.286 ETKDGv3 50
7BQ OAY 9.425 -2.926 -0.097 ETKDGv3 51
7BQ CAW 9.029 -1.228 1.581 ETKDGv3 52
7BQ OAX 10.349 -0.790 1.409 ETKDGv3 53
7BQ H1 -10.256 0.070 0.122 ETKDGv3 54
7BQ H2 -9.025 1.927 0.528 ETKDGv3 55
7BQ H3 -8.675 3.055 2.653 ETKDGv3 56
7BQ H4 -10.416 2.671 2.410 ETKDGv3 57
7BQ H5 -10.112 -2.064 1.343 ETKDGv3 58
7BQ H6 -7.481 -2.427 -0.692 ETKDGv3 59
7BQ H7 -7.467 -2.158 1.489 ETKDGv3 60
7BQ H8 -10.055 -1.472 3.441 ETKDGv3 61
7BQ H9 -11.914 -0.305 1.513 ETKDGv3 62
7BQ H10 -9.683 2.182 4.509 ETKDGv3 63
7BQ H11 -7.549 0.298 -0.337 ETKDGv3 64
7BQ H12 -5.506 -1.111 0.026 ETKDGv3 65
7BQ H13 -5.518 -0.665 1.770 ETKDGv3 66
7BQ H14 -5.295 1.336 -0.588 ETKDGv3 67
7BQ H15 -5.306 1.755 1.160 ETKDGv3 68
7BQ H16 -3.068 1.128 1.320 ETKDGv3 69
7BQ H17 -0.990 0.473 0.402 ETKDGv3 70
7BQ H18 -0.935 -0.751 -2.403 ETKDGv3 71
7BQ H19 2.072 1.395 -2.991 ETKDGv3 72
7BQ H20 1.304 -0.151 -3.453 ETKDGv3 73
7BQ H21 -0.633 -0.121 -4.942 ETKDGv3 74
7BQ H22 -1.999 1.146 -6.669 ETKDGv3 75
7BQ H23 -1.833 3.560 -6.827 ETKDGv3 76
7BQ H24 -0.278 4.839 -5.257 ETKDGv3 77
7BQ H25 1.042 3.649 -3.617 ETKDGv3 78
7BQ H26 -1.662 -1.752 1.211 ETKDGv3 79
7BQ H27 -1.668 -2.411 -0.463 ETKDGv3 80
7BQ H28 0.880 -0.743 1.974 ETKDGv3 81
7BQ H29 3.210 -0.095 4.395 ETKDGv3 82
7BQ H30 4.264 0.893 1.244 ETKDGv3 83
7BQ H31 2.722 0.600 0.402 ETKDGv3 84
7BQ H32 4.539 1.238 -1.148 ETKDGv3 85
7BQ H33 4.156 -0.353 -2.602 ETKDGv3 86
7BQ H34 6.272 -0.837 -1.497 ETKDGv3 87
7BQ H35 6.788 1.206 0.706 ETKDGv3 88
7BQ H36 9.111 2.914 -1.715 ETKDGv3 89
7BQ H37 9.086 2.349 0.000 ETKDGv3 90
7BQ H38 7.805 3.480 -0.598 ETKDGv3 91
7BQ H39 6.192 -0.894 1.570 ETKDGv3 92
7BQ H40 6.884 -2.989 -0.577 ETKDGv3 93
7BQ H41 6.339 -4.070 1.207 ETKDGv3 94
7BQ H42 8.566 -1.148 -0.523 ETKDGv3 95
7BQ H43 9.470 -3.585 0.645 ETKDGv3 96
7BQ H44 8.984 -1.949 2.428 ETKDGv3 97
7BQ H45 8.389 -0.354 1.824 ETKDGv3 98
7BQ H46 10.614 -0.370 2.268 ETKDGv3 99
#