data_7KX
#
_chem_comp.id 7KX
_chem_comp.name N-[3-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H14 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-11-07
_chem_comp.pdbx_modified_date 2017-02-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.298
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7KX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5TTV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7KX N3 N1 N 0 1 Y N N N N N 3.170 14.033 -3.123 3.438 -2.008 0.608 N3 7KX 1
7KX C4 C1 C 0 1 Y N N N N N -0.975 18.428 -5.293 -2.098 1.182 0.399 C4 7KX 2
7KX N2 N2 N 0 1 Y N N N N N 1.769 12.088 -3.516 4.669 -0.430 -0.868 N2 7KX 3
7KX C7 C2 C 0 1 Y N N N N N -1.530 16.051 -3.970 0.518 2.112 0.388 C7 7KX 4
7KX C6 C3 C 0 1 Y N N N N N -2.567 16.865 -4.392 -0.534 3.005 0.342 C6 7KX 5
7KX C9 C4 C 0 1 Y N N N N N 0.064 17.588 -4.901 -1.048 0.277 0.446 C9 7KX 6
7KX C13 C5 C 0 1 Y N N N N N 0.480 11.872 -3.930 4.331 0.777 -1.419 C13 7KX 7
7KX C8 C6 C 0 1 Y N N N N N -0.203 16.395 -4.224 0.266 0.741 0.441 C8 7KX 8
7KX C1 C7 C 0 1 N N N N N N 0.729 21.737 -7.296 -5.262 -2.194 -1.057 C1 7KX 9
7KX C2 C8 C 0 1 N N N N N N -0.782 21.684 -7.192 -5.177 -0.869 -0.297 C2 7KX 10
7KX C3 C9 C 0 1 N N N N N N -1.282 20.290 -6.900 -3.738 -0.427 -0.219 C3 7KX 11
7KX O1 O1 O 0 1 N N N N N N -2.149 19.752 -7.594 -2.867 -1.105 -0.721 O1 7KX 12
7KX N1 N3 N 0 1 N N N N N N -0.694 19.702 -5.833 -3.419 0.722 0.410 N1 7KX 13
7KX C5 C10 C 0 1 Y N N N N N -2.295 18.053 -5.053 -1.837 2.546 0.348 C5 7KX 14
7KX C10 C11 C 0 1 Y N N N N N 0.907 15.498 -3.806 1.392 -0.220 0.491 C10 7KX 15
7KX C11 C12 C 0 1 Y N N N N N 0.818 14.082 -3.852 2.588 0.036 -0.199 C11 7KX 16
7KX C12 C13 C 0 1 Y N N N N N -0.143 13.053 -4.153 3.083 1.114 -1.051 C12 7KX 17
7KX C14 C14 C 0 1 Y N N N N N 2.020 13.431 -3.473 3.631 -0.911 -0.118 C14 7KX 18
7KX C15 C15 C 0 1 Y N N N N N 3.078 15.364 -3.108 2.299 -2.206 1.238 C15 7KX 19
7KX N4 N4 N 0 1 Y N N N N N 2.031 16.127 -3.423 1.298 -1.349 1.191 N4 7KX 20
7KX H1 H1 H 0 1 N N N N N N 2.426 11.372 -3.281 5.521 -0.879 -0.992 H1 7KX 21
7KX H2 H2 H 0 1 N N N N N N -1.752 15.138 -3.437 1.535 2.475 0.384 H2 7KX 22
7KX H3 H3 H 0 1 N N N N N N -3.590 16.574 -4.206 -0.337 4.066 0.301 H3 7KX 23
7KX H4 H4 H 0 1 N N N N N N 1.085 17.861 -5.122 -1.249 -0.783 0.487 H4 7KX 24
7KX H5 H5 H 0 1 N N N N N N 0.027 10.900 -4.060 4.971 1.371 -2.054 H5 7KX 25
7KX H6 H6 H 0 1 N N N N N N 1.046 22.768 -7.509 -4.677 -2.951 -0.534 H6 7KX 26
7KX H7 H7 H 0 1 N N N N N N 1.174 21.405 -6.346 -6.303 -2.514 -1.113 H7 7KX 27
7KX H8 H8 H 0 1 N N N N N N 1.064 21.075 -8.108 -4.868 -2.061 -2.064 H8 7KX 28
7KX H9 H9 H 0 1 N N N N N N -1.106 22.354 -6.382 -5.762 -0.112 -0.819 H9 7KX 29
7KX H10 H10 H 0 1 N N N N N N -1.215 22.024 -8.144 -5.571 -1.002 0.711 H10 7KX 30
7KX H11 H11 H 0 1 N N N N N N 0.021 20.230 -5.375 -4.106 1.230 0.870 H11 7KX 31
7KX H12 H12 H 0 1 N N N N N N -3.105 18.687 -5.381 -2.656 3.249 0.311 H12 7KX 32
7KX H13 H13 H 0 1 N N N N N N -1.159 13.195 -4.490 2.549 2.010 -1.331 H13 7KX 33
7KX H14 H14 H 0 1 N N N N N N 3.968 15.893 -2.800 2.179 -3.109 1.818 H14 7KX 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7KX O1 C3 DOUB N N 1
7KX C1 C2 SING N N 2
7KX C2 C3 SING N N 3
7KX C3 N1 SING N N 4
7KX N1 C4 SING N N 5
7KX C4 C5 DOUB Y N 6
7KX C4 C9 SING Y N 7
7KX C5 C6 SING Y N 8
7KX C9 C8 DOUB Y N 9
7KX C6 C7 DOUB Y N 10
7KX C8 C7 SING Y N 11
7KX C8 C10 SING N N 12
7KX C12 C13 DOUB Y N 13
7KX C12 C11 SING Y N 14
7KX C13 N2 SING Y N 15
7KX C11 C10 DOUB Y N 16
7KX C11 C14 SING Y N 17
7KX C10 N4 SING Y N 18
7KX N2 C14 SING Y N 19
7KX C14 N3 DOUB Y N 20
7KX N4 C15 DOUB Y N 21
7KX N3 C15 SING Y N 22
7KX N2 H1 SING N N 23
7KX C7 H2 SING N N 24
7KX C6 H3 SING N N 25
7KX C9 H4 SING N N 26
7KX C13 H5 SING N N 27
7KX C1 H6 SING N N 28
7KX C1 H7 SING N N 29
7KX C1 H8 SING N N 30
7KX C2 H9 SING N N 31
7KX C2 H10 SING N N 32
7KX N1 H11 SING N N 33
7KX C5 H12 SING N N 34
7KX C12 H13 SING N N 35
7KX C15 H14 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7KX SMILES ACDLabs 12.01 n2cnc(c1cccc(c1)NC(CC)=O)c3c2ncc3
7KX InChI InChI 1.03 InChI=1S/C15H14N4O/c1-2-13(20)19-11-5-3-4-10(8-11)14-12-6-7-16-15(12)18-9-17-14/h3-9H,2H2,1H3,(H,19,20)(H,16,17,18)
7KX InChIKey InChI 1.03 KBXLCIHWXYBYSJ-UHFFFAOYSA-N
7KX SMILES_CANONICAL CACTVS 3.385 CCC(=O)Nc1cccc(c1)c2ncnc3[nH]ccc23
7KX SMILES CACTVS 3.385 CCC(=O)Nc1cccc(c1)c2ncnc3[nH]ccc23
7KX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCC(=O)Nc1cccc(c1)c2c3cc[nH]c3ncn2
7KX SMILES "OpenEye OEToolkits" 2.0.6 CCC(=O)Nc1cccc(c1)c2c3cc[nH]c3ncn2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7KX "SYSTEMATIC NAME" ACDLabs 12.01 N-[3-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]propanamide
7KX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 ~{N}-[3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7KX 'Create component' 2016-11-07 RCSB
7KX 'Initial release' 2017-02-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7KX N3 N 6.897 -5.330 1
7KX C4 C 5.598 1.421 2
7KX N2 N 9.616 -5.037 3
7KX C7 C 8.196 -0.080 4
7KX C6 C 8.196 1.421 5
7KX C9 C 5.598 -0.080 6
7KX C13 C 10.491 -3.829 7
7KX C8 C 6.897 -0.830 8
7KX C1 C 3.000 5.920 9
7KX C2 C 3.000 4.420 10
7KX C3 C 4.299 3.671 11
7KX O1 O 5.598 4.420 12
7KX N1 N 4.299 2.171 13
7KX C5 C 6.897 2.171 14
7KX C10 C 6.897 -2.329 15
7KX C11 C 8.196 -3.079 16
7KX C12 C 9.616 -2.622 17
7KX C14 C 8.196 -4.580 18
7KX C15 C 5.598 -4.580 19
7KX N4 N 5.598 -3.079 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7KX O1 C3 DOUBLE NONE 1
7KX C1 C2 SINGLE NONE 2
7KX C2 C3 SINGLE NONE 3
7KX C3 N1 SINGLE NONE 4
7KX N1 C4 SINGLE NONE 5
7KX C4 C5 DOUBLE NONE 6
7KX C4 C9 SINGLE NONE 7
7KX C5 C6 SINGLE NONE 8
7KX C9 C8 DOUBLE NONE 9
7KX C6 C7 DOUBLE NONE 10
7KX C8 C7 SINGLE NONE 11
7KX C8 C10 SINGLE NONE 12
7KX C12 C13 DOUBLE NONE 13
7KX C12 C11 SINGLE NONE 14
7KX C13 N2 SINGLE NONE 15
7KX C11 C10 DOUBLE NONE 16
7KX C11 C14 SINGLE NONE 17
7KX C10 N4 SINGLE NONE 18
7KX N2 C14 SINGLE NONE 19
7KX C14 N3 DOUBLE NONE 20
7KX N4 C15 DOUBLE NONE 21
7KX N3 C15 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7KX MurckoScaffold S1 scaffold 'c1ccc(-c2ncnc3[nH]ccc23)cc1' InChI=1S/C12H9N3/c1-2-4-9(5-3-1)11-10-6-7-13-12(10)15-8-14-11/h1-8H,(H,13,14,15) XWMVYDXYOLGHBU-UHFFFAOYSA-N
7KX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
7KX phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
7KX pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
7KX pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7KX N3 S1 1
7KX C4 S1 1
7KX N2 S1 1
7KX C7 S1 1
7KX C6 S1 1
7KX C9 S1 1
7KX C13 S1 1
7KX C8 S1 1
7KX C5 S1 1
7KX C10 S1 1
7KX C11 S1 1
7KX C12 S1 1
7KX C14 S1 1
7KX C15 S1 1
7KX N4 S1 1
7KX N1 F1 1
7KX C3 F1 1
7KX O1 F1 1
7KX C2 F1 1
7KX C4 F2 1
7KX C5 F2 1
7KX C6 F2 1
7KX C7 F2 1
7KX C8 F2 1
7KX C9 F2 1
7KX C11 F3 1
7KX C10 F3 1
7KX N4 F3 1
7KX C15 F3 1
7KX N3 F3 1
7KX C14 F3 1
7KX C13 F4 1
7KX C12 F4 1
7KX C11 F4 1
7KX C14 F4 1
7KX N2 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7KX
_pdbe_chem_comp_rdkit_properties.exactmw 266.117
_pdbe_chem_comp_rdkit_properties.amw 266.304
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.411
_pdbe_chem_comp_rdkit_properties.tpsa 70.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.784
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.893
_pdbe_chem_comp_rdkit_properties.chi0v 9.697
_pdbe_chem_comp_rdkit_properties.chi1v 5.243
_pdbe_chem_comp_rdkit_properties.chi2v 2.290
_pdbe_chem_comp_rdkit_properties.chi3v 2.290
_pdbe_chem_comp_rdkit_properties.chi4v 1.491
_pdbe_chem_comp_rdkit_properties.chi0n 23.697
_pdbe_chem_comp_rdkit_properties.chi1n 12.137
_pdbe_chem_comp_rdkit_properties.chi2n 2.290
_pdbe_chem_comp_rdkit_properties.chi3n 2.290
_pdbe_chem_comp_rdkit_properties.chi4n 1.491
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.690
_pdbe_chem_comp_rdkit_properties.kappa1 4.150
_pdbe_chem_comp_rdkit_properties.kappa2 5.126
_pdbe_chem_comp_rdkit_properties.kappa3 2.252
_pdbe_chem_comp_rdkit_properties.Phi 1.064
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7KX UniChem PDBe 7KX
7KX UniChem ZINC ZINC000584905395
7KX UniChem PubChem 137348637
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7KX N3 4.367 2.140 -1.121 ETKDGv3 1
7KX C4 -1.407 -0.619 0.180 ETKDGv3 2
7KX N2 5.675 0.517 0.113 ETKDGv3 3
7KX C7 1.040 -1.850 -0.525 ETKDGv3 4
7KX C6 -0.043 -2.598 -0.289 ETKDGv3 5
7KX C9 -0.198 0.204 -0.067 ETKDGv3 6
7KX C13 5.246 -0.680 0.776 ETKDGv3 7
7KX C8 0.975 -0.373 -0.387 ETKDGv3 8
7KX C1 -5.545 1.465 0.017 ETKDGv3 9
7KX C2 -5.148 0.230 0.817 ETKDGv3 10
7KX C3 -3.941 -0.423 0.216 ETKDGv3 11
7KX O1 -4.095 -1.318 -0.659 ETKDGv3 12
7KX N1 -2.626 0.032 0.575 ETKDGv3 13
7KX C5 -1.317 -1.960 0.097 ETKDGv3 14
7KX C10 2.165 0.467 -0.648 ETKDGv3 15
7KX C11 3.394 0.143 -0.229 ETKDGv3 16
7KX C12 3.939 -0.927 0.605 ETKDGv3 17
7KX C14 4.498 1.013 -0.494 ETKDGv3 18
7KX C15 3.051 2.500 -1.595 ETKDGv3 19
7KX N4 2.025 1.716 -1.366 ETKDGv3 20
7KX H1 6.621 0.957 0.135 ETKDGv3 21
7KX H2 1.957 -2.331 -0.840 ETKDGv3 22
7KX H3 0.009 -3.674 -0.389 ETKDGv3 23
7KX H4 -0.272 1.281 0.025 ETKDGv3 24
7KX H5 5.905 -1.300 1.369 ETKDGv3 25
7KX H6 -5.788 1.184 -1.030 ETKDGv3 26
7KX H7 -4.718 2.207 0.015 ETKDGv3 27
7KX H8 -6.441 1.933 0.476 ETKDGv3 28
7KX H9 -4.930 0.523 1.866 ETKDGv3 29
7KX H10 -5.996 -0.489 0.831 ETKDGv3 30
7KX H11 -2.548 0.949 1.070 ETKDGv3 31
7KX H12 -2.162 -2.593 0.330 ETKDGv3 32
7KX H13 3.400 -1.754 1.046 ETKDGv3 33
7KX H14 2.909 3.427 -2.132 ETKDGv3 34
#