data_7L1
#
_chem_comp.id 7L1
_chem_comp.name
"S-{(3S,5R,9R)-1-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} ethanethioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H38 N7 O17 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-11-07
_chem_comp.pdbx_modified_date 2018-07-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 809.571
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7L1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5TS7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7L1 C15 C1 C 0 1 N N N N N N 6.576 71.352 17.768 -4.078 4.172 2.099 C15 7L1 1
7L1 C17 C2 C 0 1 N N N N N N 5.915 72.602 18.310 -3.432 5.231 2.995 C17 7L1 2
7L1 C20 C3 C 0 1 N N N N N N 7.777 72.264 15.640 -6.234 3.349 1.193 C20 7L1 3
7L1 C24 C4 C 0 1 N N N N N N 9.305 75.099 15.452 -6.548 -0.345 0.899 C24 7L1 4
7L1 C28 C5 C 0 1 N N N N N N 8.274 75.618 19.185 -7.566 -3.553 -0.926 C28 7L1 5
7L1 C01 C6 C 0 1 N N R N N N -0.485 67.670 20.635 6.005 1.485 -0.758 C01 7L1 6
7L1 O02 O1 O 0 1 N N N N N N -1.592 68.119 21.296 7.083 2.158 -0.104 O02 7L1 7
7L1 C03 C7 C 0 1 N N R N N N 0.744 68.463 21.076 4.655 1.917 -0.154 C03 7L1 8
7L1 C04 C8 C 0 1 N N N N N N 2.055 67.583 20.879 3.783 2.558 -1.236 C04 7L1 9
7L1 O05 O2 O 0 1 N N N N N N 2.145 67.135 19.527 2.582 3.060 -0.645 O05 7L1 10
7L1 P06 P1 P 0 1 N N N N N N 3.502 66.475 19.059 1.431 3.800 -1.492 P06 7L1 11
7L1 O07 O3 O 0 1 N N N N N N 4.131 65.761 20.221 2.006 5.180 -2.088 O07 7L1 12
7L1 O08 O4 O 0 1 N N N N N N 3.233 65.477 17.957 0.997 2.925 -2.605 O08 7L1 13
7L1 O09 O5 O 0 1 N N N N N N 4.447 67.675 18.584 0.175 4.111 -0.534 O09 7L1 14
7L1 P10 P2 P 0 1 N N N N N N 5.341 67.760 17.257 -1.380 4.433 -0.797 P10 7L1 15
7L1 O11 O6 O 0 1 N N N N N N 6.207 66.546 17.126 -1.533 5.942 -1.335 O11 7L1 16
7L1 O12 O7 O 0 1 N N N N N N 4.469 67.865 16.035 -1.914 3.492 -1.807 O12 7L1 17
7L1 O13 O8 O 0 1 N N N N N N 6.200 69.049 17.389 -2.202 4.268 0.578 O13 7L1 18
7L1 C14 C9 C 0 1 N N N N N N 5.722 70.126 18.134 -3.625 4.383 0.653 C14 7L1 19
7L1 C16 C10 C 0 1 N N N N N N 7.938 71.191 18.407 -3.654 2.779 2.568 C16 7L1 20
7L1 C18 C11 C 0 1 N N R N N N 6.637 71.427 16.218 -5.601 4.296 2.179 C18 7L1 21
7L1 O19 O9 O 0 1 N N N N N N 5.442 71.930 15.743 -5.987 5.636 1.867 O19 7L1 22
7L1 O21 O10 O 0 1 N N N N N N 8.937 71.885 15.671 -6.782 3.782 0.201 O21 7L1 23
7L1 N22 N1 N 0 1 N N N N N N 7.489 73.551 14.965 -6.193 2.020 1.413 N22 7L1 24
7L1 C23 C12 C 0 1 N N N N N N 8.576 74.305 14.407 -6.715 1.094 0.405 C23 7L1 25
7L1 C25 C13 C 0 1 N N N N N N 8.543 75.592 16.716 -7.085 -1.297 -0.138 C25 7L1 26
7L1 O26 O11 O 0 1 N N N N N N 7.592 76.377 16.599 -7.556 -0.868 -1.170 O26 7L1 27
7L1 N27 N2 N 0 1 N N N N N N 8.962 75.164 18.007 -7.044 -2.626 0.082 N27 7L1 28
7L1 C29 C14 C 0 1 N N N N N N 8.658 77.056 19.526 -7.399 -4.991 -0.432 C29 7L1 29
7L1 S30 S1 S 0 1 N N N N N N 8.490 77.367 21.291 -8.045 -6.135 -1.677 S30 7L1 30
7L1 C31 C15 C 0 1 N N N N N N 10.161 77.257 21.973 -7.743 -7.628 -0.894 C31 7L1 31
7L1 C32 C16 C 0 1 N N N N N N 10.415 77.425 23.462 -8.123 -8.922 -1.566 C32 7L1 32
7L1 O33 O12 O 0 1 N N N N N N 11.115 77.234 21.217 -7.223 -7.643 0.202 O33 7L1 33
7L1 O34 O13 O 0 1 N N N N N N 0.770 69.490 20.316 4.016 0.734 0.354 O34 7L1 34
7L1 C35 C17 C 0 1 N N R N N N -0.448 69.323 19.254 5.064 -0.204 0.679 C35 7L1 35
7L1 N36 N3 N 0 1 Y N N N N N -0.109 69.847 17.965 4.539 -1.571 0.719 N36 7L1 36
7L1 C37 C18 C 0 1 Y N N N N N 1.081 69.791 17.384 3.423 -2.025 0.082 C37 7L1 37
7L1 N38 N4 N 0 1 Y N N N N N 1.031 70.375 16.180 3.250 -3.290 0.335 N38 7L1 38
7L1 C39 C19 C 0 1 Y N N N N N -0.248 70.819 15.975 4.242 -3.727 1.148 C39 7L1 39
7L1 C40 C20 C 0 1 Y N N N N N -0.982 70.485 17.117 5.084 -2.631 1.400 C40 7L1 40
7L1 N41 N5 N 0 1 Y N N N N N -2.310 70.812 17.197 6.146 -2.798 2.181 N41 7L1 41
7L1 C42 C21 C 0 1 Y N N N N N -2.909 71.459 16.170 6.410 -3.973 2.713 C42 7L1 42
7L1 N43 N6 N 0 1 Y N N N N N -2.274 71.799 15.078 5.648 -5.032 2.505 N43 7L1 43
7L1 C44 C22 C 0 1 Y N N N N N -0.945 71.508 14.921 4.567 -4.962 1.736 C44 7L1 44
7L1 N45 N7 N 0 1 N N N N N N -0.266 71.877 13.732 3.775 -6.076 1.524 N45 7L1 45
7L1 C46 C23 C 0 1 N N R N N N -0.569 68.070 19.169 6.073 -0.037 -0.486 C46 7L1 46
7L1 O47 O14 O 0 1 N N N N N N -1.859 67.606 18.545 7.388 -0.425 -0.082 O47 7L1 47
7L1 P48 P3 P 0 1 N N N N N N -2.020 66.001 18.373 8.210 -1.611 -0.796 P48 7L1 48
7L1 O49 O15 O 0 1 N N N N N N -2.237 65.383 19.745 9.693 -1.686 -0.174 O49 7L1 49
7L1 O50 O16 O 0 1 N N N N N N -0.741 65.429 17.764 7.454 -3.012 -0.550 O50 7L1 50
7L1 O51 O17 O 0 1 N N N N N N -3.207 65.700 17.495 8.297 -1.346 -2.249 O51 7L1 51
7L1 H1 H1 H 0 1 N N N N N N 5.872 72.548 19.408 -3.635 6.222 2.590 H1 7L1 52
7L1 H2 H2 H 0 1 N N N N N N 6.498 73.485 18.009 -3.846 5.157 4.001 H2 7L1 53
7L1 H3 H3 H 0 1 N N N N N N 4.895 72.681 17.907 -2.355 5.067 3.033 H3 7L1 54
7L1 H4 H4 H 0 1 N N N N N N 10.138 74.473 15.805 -5.491 -0.550 1.068 H4 7L1 55
7L1 H5 H5 H 0 1 N N N N N N 9.705 75.993 14.952 -7.097 -0.475 1.831 H5 7L1 56
7L1 H6 H6 H 0 1 N N N N N N 7.189 75.568 19.009 -8.623 -3.347 -1.095 H6 7L1 57
7L1 H7 H7 H 0 1 N N N N N N 8.539 74.965 20.030 -7.017 -3.423 -1.858 H7 7L1 58
7L1 H8 H8 H 0 1 N N N N N N -0.316 66.588 20.741 6.026 1.685 -1.829 H8 7L1 59
7L1 H9 H9 H 0 1 N N N N N N -1.538 67.869 22.211 7.057 3.121 -0.193 H9 7L1 60
7L1 H10 H10 H 0 1 N N N N N N 0.650 68.715 22.143 4.821 2.626 0.656 H10 7L1 61
7L1 H11 H11 H 0 1 N N N N N N 2.013 66.712 21.549 4.328 3.378 -1.703 H11 7L1 62
7L1 H12 H12 H 0 1 N N N N N N 2.940 68.189 21.121 3.533 1.812 -1.990 H12 7L1 63
7L1 H13 H13 H 0 1 N N N N N N 4.224 64.839 20.014 2.310 5.804 -1.414 H13 7L1 64
7L1 H14 H14 H 0 1 N N N N N N 6.018 66.109 16.304 -1.202 6.614 -0.723 H14 7L1 65
7L1 H15 H15 H 0 1 N N N N N N 4.667 70.315 17.887 -4.084 3.629 0.014 H15 7L1 66
7L1 H16 H16 H 0 1 N N N N N N 5.814 69.910 19.209 -3.927 5.376 0.318 H16 7L1 67
7L1 H17 H17 H 0 1 N N N N N N 7.827 71.144 19.500 -2.566 2.722 2.601 H17 7L1 68
7L1 H18 H18 H 0 1 N N N N N N 8.405 70.263 18.046 -4.058 2.592 3.563 H18 7L1 69
7L1 H19 H19 H 0 1 N N N N N N 8.572 72.049 18.139 -4.036 2.030 1.874 H19 7L1 70
7L1 H20 H20 H 0 1 N N N N N N 6.768 70.398 15.851 -5.933 4.047 3.187 H20 7L1 71
7L1 H21 H21 H 0 1 N N N N N N 4.721 71.420 16.094 -5.723 5.926 0.983 H21 7L1 72
7L1 H22 H22 H 0 1 N N N N N N 6.550 73.890 14.899 -5.817 1.676 2.238 H22 7L1 73
7L1 H23 H23 H 0 1 N N N N N N 9.283 73.610 13.932 -6.166 1.224 -0.527 H23 7L1 74
7L1 H24 H24 H 0 1 N N N N N N 8.177 74.996 13.650 -7.772 1.299 0.235 H24 7L1 75
7L1 H25 H25 H 0 1 N N N N N N 9.741 74.543 18.095 -6.668 -2.970 0.908 H25 7L1 76
7L1 H26 H26 H 0 1 N N N N N N 9.702 77.230 19.228 -6.342 -5.197 -0.262 H26 7L1 77
7L1 H27 H27 H 0 1 N N N N N N 8.000 77.744 18.975 -7.949 -5.121 0.501 H27 7L1 78
7L1 H28 H28 H 0 1 N N N N N N 11.497 77.506 23.643 -7.288 -9.277 -2.169 H28 7L1 79
7L1 H29 H29 H 0 1 N N N N N N 9.914 78.337 23.819 -8.368 -9.666 -0.809 H29 7L1 80
7L1 H30 H30 H 0 1 N N N N N N 10.017 76.553 24.002 -8.990 -8.757 -2.207 H30 7L1 81
7L1 H31 H31 H 0 1 N N N N N N -1.335 69.829 19.663 5.530 0.055 1.630 H31 7L1 82
7L1 H32 H32 H 0 1 N N N N N N 1.962 69.341 17.818 2.777 -1.424 -0.540 H32 7L1 83
7L1 H33 H33 H 0 1 N N N N N N -3.957 71.705 16.256 7.281 -4.075 3.342 H33 7L1 84
7L1 H34 H34 H 0 1 N N N N N N -0.902 72.340 13.114 4.006 -6.922 1.940 H34 7L1 85
7L1 H35 H35 H 0 1 N N N N N N 0.488 72.494 13.957 2.988 -6.013 0.960 H35 7L1 86
7L1 H36 H36 H 0 1 N N N N N N 0.270 67.603 18.632 5.753 -0.603 -1.361 H36 7L1 87
7L1 H37 H37 H 0 1 N N N N N N -3.075 64.936 19.763 10.246 -2.380 -0.558 H37 7L1 88
7L1 H38 H38 H 0 1 N N N N N N -0.947 64.993 16.946 7.361 -3.250 0.383 H38 7L1 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7L1 N45 C44 SING N N 1
7L1 C23 N22 SING N N 2
7L1 C23 C24 SING N N 3
7L1 C44 N43 DOUB Y N 4
7L1 C44 C39 SING Y N 5
7L1 N22 C20 SING N N 6
7L1 N43 C42 SING Y N 7
7L1 C24 C25 SING N N 8
7L1 C20 O21 DOUB N N 9
7L1 C20 C18 SING N N 10
7L1 O19 C18 SING N N 11
7L1 C39 N38 SING Y N 12
7L1 C39 C40 DOUB Y N 13
7L1 O12 P10 DOUB N N 14
7L1 C42 N41 DOUB Y N 15
7L1 N38 C37 DOUB Y N 16
7L1 C18 C15 SING N N 17
7L1 O26 C25 DOUB N N 18
7L1 C25 N27 SING N N 19
7L1 C40 N41 SING Y N 20
7L1 C40 N36 SING Y N 21
7L1 O11 P10 SING N N 22
7L1 P10 O13 SING N N 23
7L1 P10 O09 SING N N 24
7L1 C37 N36 SING Y N 25
7L1 O13 C14 SING N N 26
7L1 O51 P48 DOUB N N 27
7L1 O50 P48 SING N N 28
7L1 C15 C14 SING N N 29
7L1 C15 C17 SING N N 30
7L1 C15 C16 SING N N 31
7L1 O08 P06 DOUB N N 32
7L1 N36 C35 SING N N 33
7L1 N27 C28 SING N N 34
7L1 P48 O47 SING N N 35
7L1 P48 O49 SING N N 36
7L1 O47 C46 SING N N 37
7L1 O09 P06 SING N N 38
7L1 P06 O05 SING N N 39
7L1 P06 O07 SING N N 40
7L1 C46 C35 SING N N 41
7L1 C46 C01 SING N N 42
7L1 C28 C29 SING N N 43
7L1 C35 O34 SING N N 44
7L1 C29 S30 SING N N 45
7L1 O05 C04 SING N N 46
7L1 O34 C03 SING N N 47
7L1 C01 C03 SING N N 48
7L1 C01 O02 SING N N 49
7L1 C04 C03 SING N N 50
7L1 O33 C31 DOUB N N 51
7L1 S30 C31 SING N N 52
7L1 C31 C32 SING N N 53
7L1 C17 H1 SING N N 54
7L1 C17 H2 SING N N 55
7L1 C17 H3 SING N N 56
7L1 C24 H4 SING N N 57
7L1 C24 H5 SING N N 58
7L1 C28 H6 SING N N 59
7L1 C28 H7 SING N N 60
7L1 C01 H8 SING N N 61
7L1 O02 H9 SING N N 62
7L1 C03 H10 SING N N 63
7L1 C04 H11 SING N N 64
7L1 C04 H12 SING N N 65
7L1 O07 H13 SING N N 66
7L1 O11 H14 SING N N 67
7L1 C14 H15 SING N N 68
7L1 C14 H16 SING N N 69
7L1 C16 H17 SING N N 70
7L1 C16 H18 SING N N 71
7L1 C16 H19 SING N N 72
7L1 C18 H20 SING N N 73
7L1 O19 H21 SING N N 74
7L1 N22 H22 SING N N 75
7L1 C23 H23 SING N N 76
7L1 C23 H24 SING N N 77
7L1 N27 H25 SING N N 78
7L1 C29 H26 SING N N 79
7L1 C29 H27 SING N N 80
7L1 C32 H28 SING N N 81
7L1 C32 H29 SING N N 82
7L1 C32 H30 SING N N 83
7L1 C35 H31 SING N N 84
7L1 C37 H32 SING N N 85
7L1 C42 H33 SING N N 86
7L1 N45 H34 SING N N 87
7L1 N45 H35 SING N N 88
7L1 C46 H36 SING N N 89
7L1 O49 H37 SING N N 90
7L1 O50 H38 SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7L1 SMILES ACDLabs 12.01 C(COP(OP(OCC1C(O)C(C(O1)n2cnc3c2ncnc3N)OP(O)(O)=O)(O)=O)(O)=O)(C)(C)C(C(=O)NCCC(NCCSC(C)=O)=O)O
7L1 InChI InChI 1.03 InChI=1S/C23H38N7O17P3S/c1-12(31)51-7-6-25-14(32)4-5-26-21(35)18(34)23(2,3)9-44-50(41,42)47-49(39,40)43-8-13-16(33)17(46-48(36,37)38)22(45-13)30-11-29-15-19(24)27-10-28-20(15)30/h10-11,13,16-18,22,33-34H,4-9H2,1-3H3,(H,25,32)(H,26,35)(H,39,40)(H,41,42)(H2,24,27,28)(H2,36,37,38)/t13-,16-,17-,18+,22-/m1/s1
7L1 InChIKey InChI 1.03 MQSYUKPDTZCOHX-ZSJPKINUSA-N
7L1 SMILES_CANONICAL CACTVS 3.385 CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O[P](O)(O)=O)[C@@H]1O)n2cnc3c(N)ncnc23
7L1 SMILES CACTVS 3.385 CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O[P](O)(O)=O)[CH]1O)n2cnc3c(N)ncnc23
7L1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)OP(=O)(O)O)O)O
7L1 SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)OP(=O)(O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7L1 "SYSTEMATIC NAME" ACDLabs 12.01 "S-{(3S,5R,9R)-1-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} ethanethioate"
7L1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] ethanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7L1 'Create component' 2016-11-07 RCSB
7L1 'Initial release' 2018-08-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7L1 C15 C 20.000 3.330 1
7L1 C17 C 20.612 4.699 2
7L1 C20 C 22.584 3.597 3
7L1 C24 C 26.537 3.251 4
7L1 C28 C 30.337 4.398 5
7L1 C01 C 8.236 2.727 6
7L1 O02 O 7.775 4.155 7
7L1 C03 C 9.662 2.261 8
7L1 C04 C 10.877 3.141 9
7L1 O05 O 12.247 2.528 10
7L1 P06 P 13.462 3.408 11
7L1 O07 O 12.582 4.623 12
7L1 O08 O 14.341 2.193 13
7L1 O09 O 14.677 4.288 14
7L1 P10 P 16.046 3.675 15
7L1 O11 O 15.434 2.306 16
7L1 O12 O 16.658 5.044 17
7L1 O13 O 17.415 3.062 18
7L1 C14 C 18.630 3.942 19
7L1 C16 C 19.387 1.960 20
7L1 C18 C 21.369 2.717 21
7L1 O19 O 21.523 1.225 22
7L1 O21 O 22.430 5.089 23
7L1 N22 N 23.953 2.984 24
7L1 C23 C 25.168 3.864 25
7L1 C25 C 27.752 4.131 26
7L1 O26 O 27.598 5.623 27
7L1 N27 N 29.122 3.518 28
7L1 C29 C 31.706 3.785 29
7L1 S30 S 32.921 4.665 30
7L1 C31 C 34.290 4.053 31
7L1 C32 C 35.505 4.932 32
7L1 O33 O 34.444 2.561 33
7L1 O34 O 9.660 0.761 34
7L1 C35 C 8.232 0.300 35
7L1 N36 N 7.766 -1.126 36
7L1 C37 C 8.642 -2.333 37
7L1 N38 N 7.766 -3.540 38
7L1 C39 C 6.347 -3.083 39
7L1 C40 C 6.347 -1.583 40
7L1 N41 N 5.048 -0.833 41
7L1 C42 C 3.749 -1.583 42
7L1 N43 N 3.749 -3.083 43
7L1 C44 C 5.048 -3.833 44
7L1 N45 N 5.048 -5.333 45
7L1 C46 C 7.353 1.515 46
7L1 O47 O 5.853 1.518 47
7L1 P48 P 5.105 2.818 48
7L1 O49 O 6.405 3.566 49
7L1 O50 O 3.805 2.071 50
7L1 O51 O 4.357 4.119 51
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7L1 N45 C44 SINGLE NONE 1
7L1 C23 N22 SINGLE NONE 2
7L1 C23 C24 SINGLE NONE 3
7L1 C44 N43 SINGLE NONE 4
7L1 C44 C39 DOUBLE NONE 5
7L1 N22 C20 SINGLE NONE 6
7L1 N43 C42 DOUBLE NONE 7
7L1 C24 C25 SINGLE NONE 8
7L1 C20 O21 DOUBLE NONE 9
7L1 C20 C18 SINGLE NONE 10
7L1 C18 O19 SINGLE BEGINDASH 11
7L1 C39 N38 SINGLE NONE 12
7L1 C39 C40 SINGLE NONE 13
7L1 O12 P10 DOUBLE NONE 14
7L1 C42 N41 SINGLE NONE 15
7L1 N38 C37 DOUBLE NONE 16
7L1 C18 C15 SINGLE NONE 17
7L1 O26 C25 DOUBLE NONE 18
7L1 C25 N27 SINGLE NONE 19
7L1 C40 N41 DOUBLE NONE 20
7L1 C40 N36 SINGLE NONE 21
7L1 P10 O11 SINGLE BEGINDASH 22
7L1 P10 O13 SINGLE NONE 23
7L1 P10 O09 SINGLE NONE 24
7L1 C37 N36 SINGLE NONE 25
7L1 O13 C14 SINGLE NONE 26
7L1 O51 P48 DOUBLE NONE 27
7L1 O50 P48 SINGLE NONE 28
7L1 C15 C14 SINGLE NONE 29
7L1 C15 C17 SINGLE NONE 30
7L1 C15 C16 SINGLE NONE 31
7L1 O08 P06 DOUBLE NONE 32
7L1 C35 N36 SINGLE BEGINWEDGE 33
7L1 N27 C28 SINGLE NONE 34
7L1 P48 O47 SINGLE NONE 35
7L1 P48 O49 SINGLE NONE 36
7L1 C46 O47 SINGLE BEGINDASH 37
7L1 O09 P06 SINGLE NONE 38
7L1 P06 O05 SINGLE NONE 39
7L1 P06 O07 SINGLE BEGINWEDGE 40
7L1 C46 C35 SINGLE NONE 41
7L1 C46 C01 SINGLE NONE 42
7L1 C28 C29 SINGLE NONE 43
7L1 C35 O34 SINGLE NONE 44
7L1 C29 S30 SINGLE NONE 45
7L1 O05 C04 SINGLE NONE 46
7L1 O34 C03 SINGLE NONE 47
7L1 C01 C03 SINGLE NONE 48
7L1 C01 O02 SINGLE BEGINDASH 49
7L1 C03 C04 SINGLE BEGINWEDGE 50
7L1 O33 C31 DOUBLE NONE 51
7L1 S30 C31 SINGLE NONE 52
7L1 C31 C32 SINGLE NONE 53
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7L1 MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
7L1 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
7L1 amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
7L1 imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
7L1 phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
7L1 purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
7L1 pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
7L1 ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7L1 C01 S1 1
7L1 C03 S1 1
7L1 O34 S1 1
7L1 C35 S1 1
7L1 N36 S1 1
7L1 C37 S1 1
7L1 N38 S1 1
7L1 C39 S1 1
7L1 C40 S1 1
7L1 N41 S1 1
7L1 C42 S1 1
7L1 N43 S1 1
7L1 C44 S1 1
7L1 C46 S1 1
7L1 N43 F1 1
7L1 C44 F1 1
7L1 C39 F1 1
7L1 C40 F1 1
7L1 N41 F1 1
7L1 C42 F1 1
7L1 N36 F1 1
7L1 C37 F1 1
7L1 N38 F1 1
7L1 N45 F1 1
7L1 N22 F2 1
7L1 C20 F2 1
7L1 O21 F2 1
7L1 C18 F2 1
7L1 N27 F2 2
7L1 C25 F2 2
7L1 O26 F2 2
7L1 C24 F2 2
7L1 C39 F3 1
7L1 C40 F3 1
7L1 N36 F3 1
7L1 C37 F3 1
7L1 N38 F3 1
7L1 O05 F4 1
7L1 P06 F4 1
7L1 O08 F4 1
7L1 O09 F4 1
7L1 O07 F4 1
7L1 O09 F4 2
7L1 P10 F4 2
7L1 O12 F4 2
7L1 O11 F4 2
7L1 O13 F4 2
7L1 O47 F4 3
7L1 P48 F4 3
7L1 O51 F4 3
7L1 O50 F4 3
7L1 O49 F4 3
7L1 N38 F5 1
7L1 C37 F5 1
7L1 N36 F5 1
7L1 C40 F5 1
7L1 C39 F5 1
7L1 C44 F5 1
7L1 N43 F5 1
7L1 C42 F5 1
7L1 N41 F5 1
7L1 C39 F6 1
7L1 C44 F6 1
7L1 N43 F6 1
7L1 C42 F6 1
7L1 N41 F6 1
7L1 C40 F6 1
7L1 C46 F7 1
7L1 C01 F7 1
7L1 C03 F7 1
7L1 O34 F7 1
7L1 C35 F7 1
7L1 C04 F7 1
7L1 O05 F7 1
7L1 O02 F7 1
7L1 O47 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7L1
_pdbe_chem_comp_rdkit_properties.exactmw 809.126
_pdbe_chem_comp_rdkit_properties.amw 809.578
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 24
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 29
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 23
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 51
_pdbe_chem_comp_rdkit_properties.NumAtoms 89
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 28
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.652
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 346.925
_pdbe_chem_comp_rdkit_properties.tpsa 363.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.124
_pdbe_chem_comp_rdkit_properties.CrippenMR 169.742
_pdbe_chem_comp_rdkit_properties.chi0v 26.820
_pdbe_chem_comp_rdkit_properties.chi1v 16.719
_pdbe_chem_comp_rdkit_properties.chi2v 7.398
_pdbe_chem_comp_rdkit_properties.chi3v 7.398
_pdbe_chem_comp_rdkit_properties.chi4v 4.858
_pdbe_chem_comp_rdkit_properties.chi0n 61.321
_pdbe_chem_comp_rdkit_properties.chi1n 29.759
_pdbe_chem_comp_rdkit_properties.chi2n 4.383
_pdbe_chem_comp_rdkit_properties.chi3n 4.383
_pdbe_chem_comp_rdkit_properties.chi4n 2.599
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.440
_pdbe_chem_comp_rdkit_properties.kappa1 14.005
_pdbe_chem_comp_rdkit_properties.kappa2 17.590
_pdbe_chem_comp_rdkit_properties.kappa3 12.876
_pdbe_chem_comp_rdkit_properties.Phi 4.830
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7L1 UniChem PDBe 7L1
7L1 UniChem PubChem 134693794
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7L1 C15 2.479 -1.298 1.241 ETKDGv3 1
7L1 C17 1.708 -2.176 0.227 ETKDGv3 2
7L1 C20 4.754 -2.172 0.424 ETKDGv3 3
7L1 C24 7.689 -3.449 0.386 ETKDGv3 4
7L1 C28 8.803 0.141 1.432 ETKDGv3 5
7L1 C01 -6.036 -1.657 -0.486 ETKDGv3 6
7L1 O02 -6.740 -2.673 0.185 ETKDGv3 7
7L1 C03 -5.201 -0.848 0.512 ETKDGv3 8
7L1 C04 -3.880 -0.377 -0.111 ETKDGv3 9
7L1 O05 -3.173 0.391 0.834 ETKDGv3 10
7L1 P06 -1.792 1.044 0.075 ETKDGv3 11
7L1 O07 -0.934 -0.199 -0.699 ETKDGv3 12
7L1 O08 -2.229 2.083 -0.935 ETKDGv3 13
7L1 O09 -0.841 1.784 1.278 ETKDGv3 14
7L1 P10 0.670 2.162 0.590 ETKDGv3 15
7L1 O11 0.466 3.015 -0.858 ETKDGv3 16
7L1 O12 1.437 3.038 1.555 ETKDGv3 17
7L1 O13 1.566 0.743 0.281 ETKDGv3 18
7L1 C14 1.676 0.008 1.481 ETKDGv3 19
7L1 C16 2.573 -2.061 2.583 ETKDGv3 20
7L1 C18 3.903 -0.950 0.691 ETKDGv3 21
7L1 O19 4.571 -0.090 1.581 ETKDGv3 22
7L1 O21 4.723 -2.706 -0.718 ETKDGv3 23
7L1 N22 5.579 -2.731 1.458 ETKDGv3 24
7L1 C23 6.476 -3.863 1.226 ETKDGv3 25
7L1 C25 8.459 -2.347 1.052 ETKDGv3 26
7L1 O26 9.321 -2.633 1.926 ETKDGv3 27
7L1 N27 8.170 -0.977 0.737 ETKDGv3 28
7L1 C29 10.227 0.353 0.917 ETKDGv3 29
7L1 S30 11.056 1.702 1.828 ETKDGv3 30
7L1 C31 10.358 3.028 0.834 ETKDGv3 31
7L1 C32 9.128 3.751 1.283 ETKDGv3 32
7L1 O33 10.909 3.355 -0.205 ETKDGv3 33
7L1 O34 -5.945 0.277 0.932 ETKDGv3 34
7L1 C35 -7.123 0.333 0.158 ETKDGv3 35
7L1 N36 -7.355 1.702 -0.302 ETKDGv3 36
7L1 C37 -6.355 2.597 -0.837 ETKDGv3 37
7L1 N38 -6.810 3.524 -1.639 ETKDGv3 38
7L1 C39 -8.211 3.299 -1.711 ETKDGv3 39
7L1 C40 -8.541 2.182 -0.904 ETKDGv3 40
7L1 N41 -9.708 1.615 -0.927 ETKDGv3 41
7L1 C42 -10.731 2.223 -1.750 ETKDGv3 42
7L1 N43 -10.451 3.265 -2.498 ETKDGv3 43
7L1 C44 -9.123 3.838 -2.520 ETKDGv3 44
7L1 N45 -8.806 4.910 -3.408 ETKDGv3 45
7L1 C46 -6.991 -0.621 -1.022 ETKDGv3 46
7L1 O47 -8.253 -1.176 -1.342 ETKDGv3 47
7L1 P48 -8.359 -1.447 -3.025 ETKDGv3 48
7L1 O49 -7.060 -2.397 -3.556 ETKDGv3 49
7L1 O50 -9.803 -2.262 -3.356 ETKDGv3 50
7L1 O51 -8.364 -0.124 -3.758 ETKDGv3 51
7L1 H1 1.669 -1.688 -0.770 ETKDGv3 52
7L1 H2 0.665 -2.349 0.571 ETKDGv3 53
7L1 H3 2.190 -3.169 0.110 ETKDGv3 54
7L1 H4 8.353 -4.330 0.251 ETKDGv3 55
7L1 H5 7.363 -3.125 -0.625 ETKDGv3 56
7L1 H6 8.810 -0.050 2.527 ETKDGv3 57
7L1 H7 8.206 1.059 1.248 ETKDGv3 58
7L1 H8 -5.426 -2.093 -1.311 ETKDGv3 59
7L1 H9 -6.096 -3.415 0.328 ETKDGv3 60
7L1 H10 -4.960 -1.471 1.402 ETKDGv3 61
7L1 H11 -3.286 -1.275 -0.396 ETKDGv3 62
7L1 H12 -4.112 0.220 -1.023 ETKDGv3 63
7L1 H13 -0.575 0.207 -1.528 ETKDGv3 64
7L1 H14 1.375 3.073 -1.248 ETKDGv3 65
7L1 H15 2.191 0.614 2.261 ETKDGv3 66
7L1 H16 0.664 -0.260 1.864 ETKDGv3 67
7L1 H17 3.060 -3.050 2.449 ETKDGv3 68
7L1 H18 3.154 -1.479 3.330 ETKDGv3 69
7L1 H19 1.560 -2.243 3.001 ETKDGv3 70
7L1 H20 3.774 -0.418 -0.282 ETKDGv3 71
7L1 H21 5.311 0.337 1.074 ETKDGv3 72
7L1 H22 5.530 -2.334 2.423 ETKDGv3 73
7L1 H23 5.923 -4.680 0.713 ETKDGv3 74
7L1 H24 6.828 -4.260 2.203 ETKDGv3 75
7L1 H25 7.423 -0.765 0.038 ETKDGv3 76
7L1 H26 10.214 0.566 -0.173 ETKDGv3 77
7L1 H27 10.819 -0.573 1.075 ETKDGv3 78
7L1 H28 9.352 4.832 1.398 ETKDGv3 79
7L1 H29 8.777 3.353 2.258 ETKDGv3 80
7L1 H30 8.323 3.622 0.529 ETKDGv3 81
7L1 H31 -7.973 0.022 0.806 ETKDGv3 82
7L1 H32 -5.300 2.498 -0.618 ETKDGv3 83
7L1 H33 -11.729 1.807 -1.760 ETKDGv3 84
7L1 H34 -9.541 5.296 -4.040 ETKDGv3 85
7L1 H35 -7.847 5.323 -3.437 ETKDGv3 86
7L1 H36 -6.503 -0.073 -1.866 ETKDGv3 87
7L1 H37 -6.327 -1.756 -3.739 ETKDGv3 88
7L1 H38 -9.745 -3.099 -2.829 ETKDGv3 89
#