data_7LD
#
_chem_comp.id 7LD
_chem_comp.name (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H25 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Lysergic acid diethylamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-11-10
_chem_comp.pdbx_modified_date 2022-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 323.432
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7LD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5TVN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7LD N1 N1 N 0 1 Y N N N N N -25.976 -12.817 6.961 5.157 0.314 0.448 N1 7LD 1
7LD N3 N2 N 0 1 N N N N N N -21.864 -20.023 10.866 -3.879 0.503 0.291 N3 7LD 2
7LD C4 C1 C 0 1 Y N N N N N -26.221 -12.989 9.395 4.058 2.564 -0.124 C4 7LD 3
7LD C5 C2 C 0 1 Y N N N N N -25.866 -13.776 10.490 2.791 3.064 -0.401 C5 7LD 4
7LD C6 C3 C 0 1 Y N N N N N -24.689 -15.220 9.007 1.704 0.942 -0.174 C6 7LD 5
7LD C7 C4 C 0 1 Y N N N N N -24.779 -14.611 6.745 3.316 -0.941 0.435 C7 7LD 6
7LD C8 C5 C 0 1 Y N N N N N -25.338 -13.597 6.082 4.632 -0.957 0.618 C8 7LD 7
7LD C10 C6 C 0 1 N N N N N N -23.329 -17.078 9.739 -0.607 0.287 0.043 C10 7LD 8
7LD C13 C7 C 0 1 N N N N N N -23.007 -18.837 8.162 -1.324 -1.921 -0.782 C13 7LD 9
7LD C15 C8 C 0 1 N N N N N N -23.988 -15.691 6.352 2.217 -1.970 0.493 C15 7LD 10
7LD C17 C9 C 0 1 N N N N N N -20.534 -20.017 10.238 -3.602 0.630 1.724 C17 7LD 11
7LD C20 C10 C 0 1 N N N N N N -22.772 -22.256 11.381 -4.952 2.472 -0.686 C20 7LD 12
7LD N2 N3 N 0 1 N N N N N N -22.935 -17.809 7.116 -0.063 -2.449 -0.252 N2 7LD 13
7LD C12 C11 C 0 1 N N N N N N -23.226 -18.427 5.814 0.260 -3.748 -0.858 C12 7LD 14
7LD C11 C12 C 0 1 N N R N N N -23.992 -16.826 7.392 1.048 -1.516 -0.393 C11 7LD 15
7LD C3 C13 C 0 1 Y N N N N N -25.080 -14.430 8.019 2.993 0.445 0.116 C3 7LD 16
7LD C1 C14 C 0 1 Y N N N N N -25.812 -13.339 8.177 4.168 1.200 0.143 C1 7LD 17
7LD C2 C15 C 0 1 Y N N N N N -25.086 -14.914 10.302 1.632 2.292 -0.431 C2 7LD 18
7LD C9 C16 C 0 1 N N N N N N -23.939 -16.350 8.714 0.644 -0.084 -0.164 C9 7LD 19
7LD C14 C17 C 0 1 N N R N N N -22.597 -18.247 9.509 -1.735 -0.710 0.062 C14 7LD 20
7LD C16 C18 C 0 1 N N N N N N -22.857 -19.171 10.533 -2.976 -0.083 -0.520 C16 7LD 21
7LD O1 O1 O 0 1 N N N N N N -23.959 -19.190 11.081 -3.161 -0.105 -1.718 O1 7LD 22
7LD C19 C19 C 0 1 N N N N N N -22.040 -21.027 11.928 -5.136 1.013 -0.261 C19 7LD 23
7LD C18 C20 C 0 1 N N N N N N -19.495 -19.669 11.303 -4.217 -0.557 2.469 C18 7LD 24
7LD H1 H1 H 0 1 N N N N N N -26.488 -11.986 6.744 6.095 0.542 0.538 H1 7LD 25
7LD H2 H2 H 0 1 N N N N N N -26.823 -12.103 9.534 4.925 3.208 -0.117 H2 7LD 26
7LD H3 H3 H 0 1 N N N N N N -26.195 -13.503 11.482 2.700 4.121 -0.606 H3 7LD 27
7LD H4 H4 H 0 1 N N N N N N -25.284 -13.434 5.016 5.210 -1.836 0.864 H4 7LD 28
7LD H5 H5 H 0 1 N N N N N N -23.427 -16.722 10.754 -0.826 1.332 0.204 H5 7LD 29
7LD H6 H6 H 0 1 N N N N N N -24.038 -19.215 8.229 -1.186 -1.615 -1.819 H6 7LD 30
7LD H7 H7 H 0 1 N N N N N N -22.329 -19.664 7.906 -2.098 -2.687 -0.726 H7 7LD 31
7LD H8 H8 H 0 1 N N N N N N -24.373 -16.083 5.399 2.596 -2.927 0.133 H8 7LD 32
7LD H9 H9 H 0 1 N N N N N N -22.954 -15.341 6.214 1.873 -2.078 1.521 H9 7LD 33
7LD H10 H10 H 0 1 N N N N N N -20.317 -21.011 9.819 -2.525 0.643 1.887 H10 7LD 34
7LD H11 H11 H 0 1 N N N N N N -20.507 -19.267 9.434 -4.037 1.557 2.097 H11 7LD 35
7LD H12 H12 H 0 1 N N N N N N -22.896 -22.997 12.184 -5.888 2.851 -1.096 H12 7LD 36
7LD H13 H13 H 0 1 N N N N N N -23.760 -21.956 11.003 -4.666 3.069 0.180 H13 7LD 37
7LD H14 H14 H 0 1 N N N N N N -22.185 -22.698 10.562 -4.172 2.533 -1.444 H14 7LD 38
7LD H16 H16 H 0 1 N N N N N N -22.450 -19.170 5.579 1.136 -4.171 -0.366 H16 7LD 39
7LD H17 H17 H 0 1 N N N N N N -24.207 -18.922 5.855 -0.586 -4.424 -0.739 H17 7LD 40
7LD H18 H18 H 0 1 N N N N N N -23.239 -17.651 5.035 0.470 -3.612 -1.919 H18 7LD 41
7LD H19 H19 H 0 1 N N N N N N -24.952 -17.349 7.266 1.389 -1.582 -1.426 H19 7LD 42
7LD H20 H20 H 0 1 N N N N N N -24.799 -15.538 11.136 0.680 2.751 -0.655 H20 7LD 43
7LD H21 H21 H 0 1 N N N N N N -21.522 -18.018 9.473 -1.929 -1.025 1.087 H21 7LD 44
7LD H22 H22 H 0 1 N N N N N N -21.053 -21.331 12.307 -5.422 0.416 -1.126 H22 7LD 45
7LD H23 H23 H 0 1 N N N N N N -22.629 -20.589 12.748 -5.917 0.952 0.498 H23 7LD 46
7LD H24 H24 H 0 1 N N N N N N -18.493 -19.660 10.849 -5.294 -0.570 2.306 H24 7LD 47
7LD H25 H25 H 0 1 N N N N N N -19.717 -18.676 11.721 -3.782 -1.485 2.096 H25 7LD 48
7LD H26 H26 H 0 1 N N N N N N -19.527 -20.420 12.106 -4.011 -0.463 3.535 H26 7LD 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7LD C12 N2 SING N N 1
7LD C8 C7 DOUB Y N 2
7LD C8 N1 SING Y N 3
7LD C15 C7 SING N N 4
7LD C15 C11 SING N N 5
7LD C7 C3 SING Y N 6
7LD N1 C1 SING Y N 7
7LD N2 C11 SING N N 8
7LD N2 C13 SING N N 9
7LD C11 C9 SING N N 10
7LD C3 C1 DOUB Y N 11
7LD C3 C6 SING Y N 12
7LD C13 C14 SING N N 13
7LD C1 C4 SING Y N 14
7LD C9 C6 SING N N 15
7LD C9 C10 DOUB N N 16
7LD C6 C2 DOUB Y N 17
7LD C4 C5 DOUB Y N 18
7LD C14 C10 SING N N 19
7LD C14 C16 SING N N 20
7LD C17 N3 SING N N 21
7LD C17 C18 SING N N 22
7LD C2 C5 SING Y N 23
7LD C16 N3 SING N N 24
7LD C16 O1 DOUB N N 25
7LD N3 C19 SING N N 26
7LD C20 C19 SING N N 27
7LD N1 H1 SING N N 28
7LD C4 H2 SING N N 29
7LD C5 H3 SING N N 30
7LD C8 H4 SING N N 31
7LD C10 H5 SING N N 32
7LD C13 H6 SING N N 33
7LD C13 H7 SING N N 34
7LD C15 H8 SING N N 35
7LD C15 H9 SING N N 36
7LD C17 H10 SING N N 37
7LD C17 H11 SING N N 38
7LD C20 H12 SING N N 39
7LD C20 H13 SING N N 40
7LD C20 H14 SING N N 41
7LD C12 H16 SING N N 42
7LD C12 H17 SING N N 43
7LD C12 H18 SING N N 44
7LD C11 H19 SING N N 45
7LD C2 H20 SING N N 46
7LD C14 H21 SING N N 47
7LD C19 H22 SING N N 48
7LD C19 H23 SING N N 49
7LD C18 H24 SING N N 50
7LD C18 H25 SING N N 51
7LD C18 H26 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7LD SMILES ACDLabs 12.01 n1c4cccc2c4c(c1)CC3N(CC(C=C23)C(N(CC)CC)=O)C
7LD InChI InChI 1.03 InChI=1S/C20H25N3O/c1-4-23(5-2)20(24)14-9-16-15-7-6-8-17-19(15)13(11-21-17)10-18(16)22(3)12-14/h6-9,11,14,18,21H,4-5,10,12H2,1-3H3/t14-,18-/m1/s1
7LD InChIKey InChI 1.03 VAYOSLLFUXYJDT-RDTXWAMCSA-N
7LD SMILES_CANONICAL CACTVS 3.385 CCN(CC)C(=O)[C@H]1CN(C)[C@@H]2Cc3c[nH]c4cccc(C2=C1)c34
7LD SMILES CACTVS 3.385 CCN(CC)C(=O)[CH]1CN(C)[CH]2Cc3c[nH]c4cccc(C2=C1)c34
7LD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCN(CC)C(=O)[C@H]1CN([C@@H]2Cc3c[nH]c4c3c(ccc4)C2=C1)C
7LD SMILES "OpenEye OEToolkits" 2.0.6 CCN(CC)C(=O)C1CN(C2Cc3c[nH]c4c3c(ccc4)C2=C1)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7LD "SYSTEMATIC NAME" ACDLabs 12.01 (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide
7LD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (6~{a}~{R},9~{R})-~{N},~{N}-diethyl-7-methyl-6,6~{a},8,9-tetrahydro-4~{H}-indolo[4,3-fg]quinoline-9-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7LD 'Create component' 2016-11-10 RCSB
7LD 'Initial release' 2017-02-01 RCSB
7LD 'Modify synonyms' 2022-09-27 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 7LD
_pdbx_chem_comp_synonyms.name "Lysergic acid diethylamide"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 7LD
_pdbe_chem_comp_drugbank_details.drugbank_id DB04829
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Lysergic acid diethylamide'
_pdbe_chem_comp_drugbank_details.description
'Debate continues over the nature and causes of chronic flashbacks. Explanations in terms of LSD physically remaining in the body for months or years after consumption have been discounted by experimental evidence. Some say HPPD is a manifestation of post-traumatic stress disorder, not related to the direct action of LSD on brain chemistry, and varies according to the susceptibility of the individual to the disorder. Many emotionally intense experiences can lead to flashbacks when a person is reminded acutely of the original experience. However, not all published case reports of chronic flashbacks appear to describe an anxious hyper-vigilant state reminiscent of post-traumatic stress disorder.'
_pdbe_chem_comp_drugbank_details.cas_number 50-37-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
7LD 'Lysergic acid diethylamide' wwPDB ?
7LD (+)-LSD DrugBank ?
7LD 'D-lysergic acid diethylamide' DrugBank ?
7LD LSD DrugBank ?
7LD 'LSD 25' DrugBank ?
7LD 'Lysergic acid diethylamide' DrugBank ?
7LD Lysergide DrugBank ?
7LD Lysergidum DrugBank ?
7LD N,N-diethyl-(+)-lysergamide DrugBank ?
7LD N,N-diethyl-D-lysergamide DrugBank ?
7LD N,N-diethyllysergamide DrugBank ?
7LD Delysid DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id 7LD
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04829
_pdbe_chem_comp_drugbank_classification.parent 'Lysergic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Ergoline and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Alkaloids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as lysergic acids and derivatives. These are alkaloids with a structure based on the lysergic acid skeleton.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
7LD DB04829 '5-hydroxytryptamine receptor 1A' Humans P08908 unknown 1
7LD DB04829 '5-hydroxytryptamine receptor 2B' Humans P41595 unknown 2
7LD DB04829 '5-hydroxytryptamine receptor 6' Humans P50406 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7LD N1 N 9.797 -4.985 1
7LD N3 N 4.308 3.555 2
7LD C4 C 6.968 -5.616 3
7LD C5 C 5.615 -4.835 4
7LD C6 C 6.992 -2.512 5
7LD C7 C 9.591 -2.512 6
7LD C8 C 10.517 -3.680 7
7LD C10 C 5.627 -0.252 8
7LD C13 C 6.968 2.092 9
7LD C15 C 9.591 -1.012 10
7LD C17 C 3.006 4.300 11
7LD C20 C 5.598 5.810 12
7LD N2 N 8.316 1.300 13
7LD C12 C 9.623 2.035 14
7LD C11 C 8.292 -0.262 15
7LD C3 C 8.292 -3.262 16
7LD C1 C 8.316 -4.825 17
7LD C2 C 5.627 -3.273 18
7LD C9 C 6.992 -1.012 19
7LD C14 C 5.615 1.310 20
7LD C16 C 4.314 2.055 21
7LD O1 O 3.017 1.300 22
7LD C19 C 5.604 4.310 23
7LD C18 C 3.000 5.800 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7LD C12 N2 SINGLE NONE 1
7LD C8 C7 DOUBLE NONE 2
7LD C8 N1 SINGLE NONE 3
7LD C15 C7 SINGLE NONE 4
7LD C15 C11 SINGLE NONE 5
7LD C7 C3 SINGLE NONE 6
7LD N1 C1 SINGLE NONE 7
7LD N2 C11 SINGLE NONE 8
7LD N2 C13 SINGLE NONE 9
7LD C11 C9 SINGLE NONE 10
7LD C3 C1 DOUBLE NONE 11
7LD C3 C6 SINGLE NONE 12
7LD C13 C14 SINGLE NONE 13
7LD C1 C4 SINGLE NONE 14
7LD C9 C6 SINGLE NONE 15
7LD C9 C10 DOUBLE NONE 16
7LD C6 C2 DOUBLE NONE 17
7LD C4 C5 DOUBLE NONE 18
7LD C14 C10 SINGLE NONE 19
7LD C14 C16 SINGLE BEGINWEDGE 20
7LD C17 N3 SINGLE NONE 21
7LD C17 C18 SINGLE NONE 22
7LD C2 C5 SINGLE NONE 23
7LD C16 N3 SINGLE NONE 24
7LD C16 O1 DOUBLE NONE 25
7LD N3 C19 SINGLE NONE 26
7LD C20 C19 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7LD MurckoScaffold S1 scaffold 'C1=C2c3cccc4[nH]cc(c34)C[C@H]2NCC1' InChI=1S/C14H14N2/c1-3-11-10-4-2-6-15-13(10)7-9-8-16-12(5-1)14(9)11/h1,3-5,8,13,15-16H,2,6-7H2/t13-/m1/s1 VUEGRGTYEAPQFU-CYBMUJFWSA-N
7LD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
7LD indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
7LD phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
7LD pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7LD N1 S1 1
7LD C4 S1 1
7LD C5 S1 1
7LD C6 S1 1
7LD C7 S1 1
7LD C8 S1 1
7LD C10 S1 1
7LD C13 S1 1
7LD C15 S1 1
7LD N2 S1 1
7LD C11 S1 1
7LD C3 S1 1
7LD C1 S1 1
7LD C2 S1 1
7LD C9 S1 1
7LD C14 S1 1
7LD N3 F1 1
7LD C16 F1 1
7LD O1 F1 1
7LD C14 F1 1
7LD C1 F2 1
7LD C3 F2 1
7LD C7 F2 1
7LD C8 F2 1
7LD N1 F2 1
7LD C6 F2 1
7LD C2 F2 1
7LD C5 F2 1
7LD C4 F2 1
7LD C4 F3 1
7LD C1 F3 1
7LD C3 F3 1
7LD C6 F3 1
7LD C2 F3 1
7LD C5 F3 1
7LD C8 F4 1
7LD C7 F4 1
7LD C3 F4 1
7LD C1 F4 1
7LD N1 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7LD
_pdbe_chem_comp_rdkit_properties.exactmw 323.200
_pdbe_chem_comp_rdkit_properties.amw 323.440
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.450
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 177.864
_pdbe_chem_comp_rdkit_properties.tpsa 39.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.368
_pdbe_chem_comp_rdkit_properties.CrippenMR 95.078
_pdbe_chem_comp_rdkit_properties.chi0v 11.750
_pdbe_chem_comp_rdkit_properties.chi1v 6.493
_pdbe_chem_comp_rdkit_properties.chi2v 3.453
_pdbe_chem_comp_rdkit_properties.chi3v 3.453
_pdbe_chem_comp_rdkit_properties.chi4v 2.421
_pdbe_chem_comp_rdkit_properties.chi0n 36.750
_pdbe_chem_comp_rdkit_properties.chi1n 18.940
_pdbe_chem_comp_rdkit_properties.chi2n 3.453
_pdbe_chem_comp_rdkit_properties.chi3n 3.453
_pdbe_chem_comp_rdkit_properties.chi4n 2.421
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.070
_pdbe_chem_comp_rdkit_properties.kappa1 3.853
_pdbe_chem_comp_rdkit_properties.kappa2 5.779
_pdbe_chem_comp_rdkit_properties.kappa3 2.204
_pdbe_chem_comp_rdkit_properties.Phi 0.928
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7LD UniChem ChEMBL CHEMBL263881
7LD UniChem DrugBank DB04829
7LD UniChem PDBe 7LD
7LD UniChem 'Guide to Pharmacology' 17
7LD UniChem 'KEGG LIGAND' C07542
7LD UniChem ChEBI 6605
7LD UniChem ZINC ZINC000096903803
7LD UniChem fdasrs 8NA5SWF92O
7LD UniChem 'PubChem TPHARMA' 15470164
7LD UniChem NMRShiftDB 80004486
7LD UniChem BindingDb 21342
7LD UniChem BindingDb 50241702
7LD UniChem 'EPA CompTox Dashboard' DTXSID1023231
7LD UniChem DrugCentral 1621
7LD UniChem MetaboLights MTBLC6605
7LD UniChem ClinicalTrials LYSERGIDE
7LD UniChem 'Probes And Drugs' PD009135
7LD UniChem Nikkaji J9.239H
7LD UniChem eMolecules 591397
7LD UniChem SureChEMBL SCHEMBL113755
7LD UniChem 'PubChem TPHARMA' 15976361
7LD UniChem PubChem 5761
7LD UniChem ACTor 50-37-3
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7LD N1 -5.970 -0.048 -0.377 ETKDGv3 1
7LD N3 3.688 0.403 -0.201 ETKDGv3 2
7LD C4 -5.024 2.113 -1.506 ETKDGv3 3
7LD C5 -3.865 2.745 -1.796 ETKDGv3 4
7LD C6 -2.525 1.075 -0.555 ETKDGv3 5
7LD C7 -3.968 -0.799 0.381 ETKDGv3 6
7LD C8 -5.257 -1.119 0.263 ETKDGv3 7
7LD C10 -0.092 0.633 -0.526 ETKDGv3 8
7LD C13 0.899 -0.778 1.275 ETKDGv3 9
7LD C15 -2.788 -1.637 0.763 ETKDGv3 10
7LD C17 4.804 1.272 0.201 ETKDGv3 11
7LD C20 3.824 -0.766 -2.366 ETKDGv3 12
7LD N2 -0.316 -1.607 1.196 ETKDGv3 13
7LD C12 -0.405 -2.443 2.410 ETKDGv3 14
7LD C11 -1.523 -0.747 1.032 ETKDGv3 15
7LD C3 -3.803 0.478 -0.224 ETKDGv3 16
7LD C1 -4.955 0.908 -0.664 ETKDGv3 17
7LD C2 -2.553 2.204 -1.307 ETKDGv3 18
7LD C9 -1.321 0.333 -0.068 ETKDGv3 19
7LD C14 1.141 -0.099 -0.072 ETKDGv3 20
7LD C16 2.325 0.841 0.033 ETKDGv3 21
7LD O1 2.118 2.024 0.426 ETKDGv3 22
7LD C19 3.996 -0.879 -0.855 ETKDGv3 23
7LD C18 5.021 1.196 1.709 ETKDGv3 24
7LD H1 -6.960 -0.050 -0.710 ETKDGv3 25
7LD H2 -5.970 2.478 -1.882 ETKDGv3 26
7LD H3 -3.878 3.637 -2.409 ETKDGv3 27
7LD H4 -5.693 -2.073 0.529 ETKDGv3 28
7LD H5 0.037 1.347 -1.328 ETKDGv3 29
7LD H6 0.803 -0.016 2.085 ETKDGv3 30
7LD H7 1.788 -1.409 1.502 ETKDGv3 31
7LD H8 -3.064 -2.210 1.672 ETKDGv3 32
7LD H9 -2.573 -2.348 -0.063 ETKDGv3 33
7LD H10 5.744 0.972 -0.310 ETKDGv3 34
7LD H11 4.601 2.323 -0.100 ETKDGv3 35
7LD H12 2.787 -0.467 -2.625 ETKDGv3 36
7LD H13 4.043 -1.745 -2.841 ETKDGv3 37
7LD H14 4.527 -0.007 -2.770 ETKDGv3 38
7LD H16 -1.173 -3.232 2.284 ETKDGv3 39
7LD H17 -0.637 -1.831 3.310 ETKDGv3 40
7LD H18 0.549 -2.987 2.586 ETKDGv3 41
7LD H19 -1.707 -0.187 1.978 ETKDGv3 42
7LD H20 -1.649 2.727 -1.581 ETKDGv3 43
7LD H21 1.324 -0.882 -0.834 ETKDGv3 44
7LD H22 5.046 -1.180 -0.645 ETKDGv3 45
7LD H23 3.366 -1.695 -0.445 ETKDGv3 46
7LD H24 4.119 1.549 2.250 ETKDGv3 47
7LD H25 5.882 1.837 1.995 ETKDGv3 48
7LD H26 5.239 0.148 2.008 ETKDGv3 49
#