data_7MC
#
_chem_comp.id 7MC
_chem_comp.name "5'-O-[(R)-[(N-acetyl-L-alpha-aspartyl)amino](3-aminopropoxy)phosphoryl]adenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H29 N8 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-04-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 560.455
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7MC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3R9G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7MC C C C 0 1 N N N N N N 65.855 10.392 5.200 -2.376 0.771 0.236 C 7MC 1
7MC N N N 0 1 N N N N N N 65.338 11.917 3.296 -1.922 3.076 -0.374 N 7MC 2
7MC O O O 0 1 N N N N N N 64.934 10.807 5.897 -1.965 0.501 -0.872 O 7MC 3
7MC P P P 0 1 N N R N N N 66.088 8.162 6.660 -2.736 -1.774 0.564 P 7MC 4
7MC N1 N1 N 0 1 Y N N N N N 62.408 1.169 10.675 7.305 1.046 -1.267 N1 7MC 5
7MC C2 C2 C 0 1 Y N N N N N 61.520 1.613 9.768 7.167 -0.264 -1.165 C2 7MC 6
7MC N3 N3 N 0 1 Y N N N N N 61.592 2.837 9.215 6.022 -0.831 -0.849 N3 7MC 7
7MC C4 C4 C 0 1 Y N N N N N 62.599 3.665 9.602 4.942 -0.092 -0.616 C4 7MC 8
7MC C5 C5 C 0 1 Y N N N N N 63.537 3.249 10.544 5.037 1.307 -0.711 C5 7MC 9
7MC C6 C6 C 0 1 Y N N N N N 63.428 1.960 11.087 6.281 1.865 -1.052 C6 7MC 10
7MC N6 N6 N 0 1 N N N N N N 64.323 1.512 12.005 6.435 3.236 -1.162 N6 7MC 11
7MC N7 N7 N 0 1 Y N N N N N 64.400 4.275 10.724 3.812 1.811 -0.430 N7 7MC 12
7MC C8 C8 C 0 1 Y N N N N N 64.009 5.292 9.926 2.990 0.834 -0.174 C8 7MC 13
7MC N8 N8 N 0 1 N N N N N N 66.483 9.238 5.372 -2.790 -0.212 1.060 N8 7MC 14
7MC N9 N9 N 0 1 Y N N N N N 62.904 4.920 9.255 3.640 -0.360 -0.275 N9 7MC 15
7MC CA CA C 0 1 N N S N N N 66.366 11.152 4.014 -2.420 2.206 0.695 CA 7MC 16
7MC CB CB C 0 1 N N N N N N 67.619 12.002 4.297 -3.862 2.590 1.034 CB 7MC 17
7MC CG CG C 0 1 N N N N N N 67.554 13.029 5.402 -3.888 3.978 1.619 CG 7MC 18
7MC "C1'" "C1'" C 0 1 N N R N N N 62.140 5.721 8.276 3.055 -1.686 -0.061 "C1'" 7MC 19
7MC O1P O1P O 0 1 N N N N N N 66.791 6.796 6.409 -3.240 -2.653 1.643 O1P 7MC 20
7MC "C2'" "C2'" C 0 1 N N R N N N 61.990 7.185 8.650 3.300 -2.162 1.393 "C2'" 7MC 21
7MC "O2'" "O2'" O 0 1 N N N N N N 60.911 7.366 9.569 4.568 -2.810 1.511 "O2'" 7MC 22
7MC "C3'" "C3'" C 0 1 N N S N N N 61.750 7.840 7.299 2.142 -3.168 1.605 "C3'" 7MC 23
7MC "O3'" "O3'" O 0 1 N N N N N N 60.372 7.858 6.924 2.598 -4.506 1.394 "O3'" 7MC 24
7MC O31 O31 O 0 1 N N N N N N 66.542 8.796 8.052 -3.654 -1.953 -0.747 O31 7MC 25
7MC C32 C32 C 0 1 N N N N N N 65.730 9.665 8.831 -5.081 -1.879 -0.713 C32 7MC 26
7MC C33 C33 C 0 1 N N N N N N 66.633 10.325 9.863 -5.636 -2.092 -2.123 C33 7MC 27
7MC C34 C34 C 0 1 N N N N N N 67.452 11.437 9.219 -7.164 -2.013 -2.087 C34 7MC 28
7MC N35 N35 N 0 1 N N N N N N 68.661 11.652 9.990 -7.696 -2.217 -3.441 N35 7MC 29
7MC C36 C36 C 0 1 N N N N N N 64.186 11.364 2.851 -0.603 3.338 -0.470 C36 7MC 30
7MC C37 C37 C 0 1 N N N N N N 63.930 10.096 3.149 -0.104 4.321 -1.497 C37 7MC 31
7MC O38 O38 O 0 1 N N N N N N 63.340 11.997 2.204 0.181 2.782 0.270 O38 7MC 32
7MC "C4'" "C4'" C 0 1 N N R N N N 62.462 6.919 6.315 1.101 -2.776 0.538 "C4'" 7MC 33
7MC "O4'" "O4'" O 0 1 N N N N N N 62.874 5.777 7.069 1.615 -1.628 -0.159 "O4'" 7MC 34
7MC "C5'" "C5'" C 0 1 N N N N N N 63.717 7.518 5.701 -0.226 -2.423 1.212 "C5'" 7MC 35
7MC "O5'" "O5'" O 0 1 N N N N N N 64.512 8.033 6.772 -1.216 -2.174 0.212 "O5'" 7MC 36
7MC OD1 OD1 O 0 1 N N N N N N 68.619 13.280 6.016 -5.061 4.572 1.888 OD1 7MC 37
7MC OD2 OD2 O 0 1 N N N N N N 66.490 13.630 5.640 -2.852 4.558 1.847 OD2 7MC 38
7MC HN HN H 0 1 N N N N N N 65.497 12.890 3.129 -2.541 3.463 -1.012 HN 7MC 39
7MC H2 H2 H 0 1 N N N N N N 60.714 0.958 9.471 8.025 -0.893 -1.348 H2 7MC 40
7MC HN6 HN6 H 0 1 N N N N N N 64.086 0.579 12.274 7.299 3.609 -1.398 HN6 7MC 41
7MC HN6A HN6A H 0 0 N N N N N N 65.241 1.521 11.608 5.680 3.823 -1.002 HN6A 7MC 42
7MC H8 H8 H 0 1 N N N N N N 64.503 6.248 9.840 1.947 0.953 0.082 H8 7MC 43
7MC HN8 HN8 H 0 1 N N N N N N 67.210 8.983 4.734 -3.119 0.004 1.947 HN8 7MC 44
7MC HA HA H 0 1 N N N N N N 66.687 10.354 3.328 -1.795 2.324 1.580 HA 7MC 45
7MC HB HB H 0 1 N N N N N N 68.421 11.300 4.567 -4.467 2.566 0.128 HB 7MC 46
7MC HBA HBA H 0 1 N N N N N N 67.843 12.551 3.370 -4.265 1.883 1.759 HBA 7MC 47
7MC "H1'" "H1'" H 0 1 N N N N N N 61.155 5.236 8.218 3.462 -2.403 -0.774 "H1'" 7MC 48
7MC "H2'" "H2'" H 0 1 N N N N N N 62.856 7.617 9.173 3.225 -1.329 2.093 "H2'" 7MC 49
7MC "HO2'" "HO2'" H 0 0 N N N N N N 60.834 8.287 9.790 4.766 -3.126 2.403 "HO2'" 7MC 50
7MC "H3'" "H3'" H 0 1 N N N N N N 62.097 8.884 7.319 1.722 -3.062 2.605 "H3'" 7MC 51
7MC "HO3'" "HO3'" H 0 0 N N N N N N 60.280 8.276 6.076 3.296 -4.784 2.003 "HO3'" 7MC 52
7MC H32 H32 H 0 1 N N N N N N 65.266 10.428 8.189 -5.469 -2.652 -0.049 H32 7MC 53
7MC H32A H32A H 0 0 N N N N N N 64.935 9.094 9.332 -5.386 -0.899 -0.347 H32A 7MC 54
7MC H33 H33 H 0 1 N N N N N N 66.013 10.752 10.665 -5.248 -1.319 -2.787 H33 7MC 55
7MC H33A H33A H 0 0 N N N N N N 67.315 9.570 10.281 -5.331 -3.072 -2.489 H33A 7MC 56
7MC H34 H34 H 0 1 N N N N N N 67.718 11.149 8.191 -7.552 -2.786 -1.423 H34 7MC 57
7MC H34A H34A H 0 0 N N N N N N 66.860 12.364 9.198 -7.468 -1.033 -1.720 H34A 7MC 58
7MC HN35 HN35 H 0 0 N N N N N N 69.200 12.382 9.569 -8.704 -2.170 -3.443 HN35 7MC 59
7MC HN3A HN3A H 0 0 N N N N N N 68.418 11.914 10.924 -7.301 -1.552 -4.089 HN3A 7MC 60
7MC H37 H37 H 0 1 N N N N N N 62.948 9.814 2.742 -0.947 4.715 -2.064 H37 7MC 61
7MC H37A H37A H 0 0 N N N N N N 64.707 9.452 2.711 0.411 5.141 -0.995 H37A 7MC 62
7MC H37B H37B H 0 0 N N N N N N 63.923 9.970 4.242 0.587 3.819 -2.174 H37B 7MC 63
7MC "H4'" "H4'" H 0 1 N N N N N N 61.768 6.705 5.489 0.958 -3.600 -0.160 "H4'" 7MC 64
7MC "H5'" "H5'" H 0 1 N N N N N N 64.276 6.747 5.151 -0.546 -3.254 1.841 "H5'" 7MC 65
7MC "H5'A" "H5'A" H 0 0 N N N N N N 63.450 8.326 5.004 -0.097 -1.531 1.826 "H5'A" 7MC 66
7MC HOD1 HOD1 H 0 0 N N N N N N 68.464 13.969 6.652 -5.028 5.463 2.262 HOD1 7MC 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7MC CA C SING N N 1
7MC C N8 SING N N 2
7MC C O DOUB N N 3
7MC C36 N SING N N 4
7MC N CA SING N N 5
7MC N HN SING N N 6
7MC N8 P SING N N 7
7MC O1P P DOUB N N 8
7MC P "O5'" SING N N 9
7MC P O31 SING N N 10
7MC C2 N1 DOUB Y N 11
7MC N1 C6 SING Y N 12
7MC N3 C2 SING Y N 13
7MC C2 H2 SING N N 14
7MC N3 C4 DOUB Y N 15
7MC N9 C4 SING Y N 16
7MC C4 C5 SING Y N 17
7MC C5 N7 SING Y N 18
7MC C5 C6 DOUB Y N 19
7MC C6 N6 SING N N 20
7MC N6 HN6 SING N N 21
7MC N6 HN6A SING N N 22
7MC C8 N7 DOUB Y N 23
7MC N9 C8 SING Y N 24
7MC C8 H8 SING N N 25
7MC N8 HN8 SING N N 26
7MC "C1'" N9 SING N N 27
7MC CA CB SING N N 28
7MC CA HA SING N N 29
7MC CB CG SING N N 30
7MC CB HB SING N N 31
7MC CB HBA SING N N 32
7MC CG OD2 DOUB N N 33
7MC CG OD1 SING N N 34
7MC "O4'" "C1'" SING N N 35
7MC "C1'" "C2'" SING N N 36
7MC "C1'" "H1'" SING N N 37
7MC "C3'" "C2'" SING N N 38
7MC "C2'" "O2'" SING N N 39
7MC "C2'" "H2'" SING N N 40
7MC "O2'" "HO2'" SING N N 41
7MC "C4'" "C3'" SING N N 42
7MC "O3'" "C3'" SING N N 43
7MC "C3'" "H3'" SING N N 44
7MC "O3'" "HO3'" SING N N 45
7MC O31 C32 SING N N 46
7MC C32 C33 SING N N 47
7MC C32 H32 SING N N 48
7MC C32 H32A SING N N 49
7MC C34 C33 SING N N 50
7MC C33 H33 SING N N 51
7MC C33 H33A SING N N 52
7MC C34 N35 SING N N 53
7MC C34 H34 SING N N 54
7MC C34 H34A SING N N 55
7MC N35 HN35 SING N N 56
7MC N35 HN3A SING N N 57
7MC O38 C36 DOUB N N 58
7MC C36 C37 SING N N 59
7MC C37 H37 SING N N 60
7MC C37 H37A SING N N 61
7MC C37 H37B SING N N 62
7MC "C5'" "C4'" SING N N 63
7MC "C4'" "O4'" SING N N 64
7MC "C4'" "H4'" SING N N 65
7MC "C5'" "O5'" SING N N 66
7MC "C5'" "H5'" SING N N 67
7MC "C5'" "H5'A" SING N N 68
7MC OD1 HOD1 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7MC SMILES ACDLabs 12.01 O=C(O)CC(NC(=O)C)C(=O)NP(=O)(OCCCN)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
7MC SMILES_CANONICAL CACTVS 3.370 CC(=O)N[C@@H](CC(O)=O)C(=O)N[P@@](=O)(OCCCN)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
7MC SMILES CACTVS 3.370 CC(=O)N[CH](CC(O)=O)C(=O)N[P](=O)(OCCCN)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
7MC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(=O)N[C@@H](CC(=O)O)C(=O)N[P@@](=O)(OCCCN)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
7MC SMILES "OpenEye OEToolkits" 1.7.0 CC(=O)NC(CC(=O)O)C(=O)NP(=O)(OCCCN)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O
7MC InChI InChI 1.03 InChI=1S/C19H29N8O10P/c1-9(28)25-10(5-12(29)30)18(33)26-38(34,35-4-2-3-20)36-6-11-14(31)15(32)19(37-11)27-8-24-13-16(21)22-7-23-17(13)27/h7-8,10-11,14-15,19,31-32H,2-6,20H2,1H3,(H,25,28)(H,29,30)(H2,21,22,23)(H,26,33,34)/t10-,11+,14+,15+,19+,38+/m0/s1
7MC InChIKey InChI 1.03 VQAWDXQIQSFFEO-HRINIYQMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7MC "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-[(N-acetyl-L-alpha-aspartyl)amino](3-aminopropoxy)phosphoryl]adenosine"
7MC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(3S)-3-acetamido-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-(3-azanylpropoxy)phosphoryl]amino]-4-oxo-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7MC 'Create component' 2011-04-18 RCSB
7MC 'Modify aromatic_flag' 2011-06-04 RCSB
7MC 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7MC C C 8.116 5.332 1
7MC N N 8.660 7.873 2
7MC O O 9.582 5.018 3
7MC P P 7.571 2.792 4
7MC N1 N 3.000 -6.986 5
7MC C2 C 3.000 -5.486 6
7MC N3 N 4.299 -4.736 7
7MC C4 C 5.598 -5.486 8
7MC C5 C 5.598 -6.986 9
7MC C6 C 4.299 -7.736 10
7MC N6 N 4.299 -9.236 11
7MC N7 N 7.018 -7.443 12
7MC C8 C 7.893 -6.236 13
7MC N8 N 7.110 4.219 14
7MC N9 N 7.018 -5.029 15
7MC CA C 7.655 6.760 16
7MC CB C 6.188 7.074 17
7MC CG C 5.727 8.501 18
7MC "C1'" C 7.483 -3.603 19
7MC O1P O 6.144 2.331 20
7MC "C2'" C 8.911 -3.142 21
7MC "O2'" O 10.123 -4.026 22
7MC "C3'" C 8.913 -1.642 23
7MC "O3'" O 10.129 -0.762 24
7MC O31 O 8.998 3.253 25
7MC C32 C 10.111 2.247 26
7MC C33 C 11.539 2.708 27
7MC C34 C 12.652 1.703 28
7MC N35 N 14.079 2.164 29
7MC C36 C 10.127 7.558 30
7MC C37 C 11.133 8.671 31
7MC O38 O 10.588 6.131 32
7MC "C4'" C 7.487 -1.176 33
7MC "O4'" O 6.604 -2.388 34
7MC "C5'" C 7.027 0.252 35
7MC "O5'" O 8.032 1.365 36
7MC OD1 O 6.732 9.614 37
7MC OD2 O 4.260 8.816 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7MC CA C SINGLE NONE 1
7MC C N8 SINGLE NONE 2
7MC C O DOUBLE NONE 3
7MC C36 N SINGLE NONE 4
7MC N CA SINGLE NONE 5
7MC P N8 SINGLE BEGINWEDGE 6
7MC O1P P DOUBLE NONE 7
7MC P "O5'" SINGLE NONE 8
7MC P O31 SINGLE NONE 9
7MC C2 N1 DOUBLE NONE 10
7MC N1 C6 SINGLE NONE 11
7MC N3 C2 SINGLE NONE 12
7MC N3 C4 DOUBLE NONE 13
7MC N9 C4 SINGLE NONE 14
7MC C4 C5 SINGLE NONE 15
7MC C5 N7 SINGLE NONE 16
7MC C5 C6 DOUBLE NONE 17
7MC C6 N6 SINGLE NONE 18
7MC C8 N7 DOUBLE NONE 19
7MC N9 C8 SINGLE NONE 20
7MC "C1'" N9 SINGLE BEGINDASH 21
7MC CA CB SINGLE BEGINDASH 22
7MC CB CG SINGLE NONE 23
7MC CG OD2 DOUBLE NONE 24
7MC CG OD1 SINGLE NONE 25
7MC "O4'" "C1'" SINGLE NONE 26
7MC "C1'" "C2'" SINGLE NONE 27
7MC "C3'" "C2'" SINGLE NONE 28
7MC "C2'" "O2'" SINGLE BEGINWEDGE 29
7MC "C4'" "C3'" SINGLE NONE 30
7MC "C3'" "O3'" SINGLE BEGINWEDGE 31
7MC O31 C32 SINGLE NONE 32
7MC C32 C33 SINGLE NONE 33
7MC C34 C33 SINGLE NONE 34
7MC C34 N35 SINGLE NONE 35
7MC O38 C36 DOUBLE NONE 36
7MC C36 C37 SINGLE NONE 37
7MC "C4'" "C5'" SINGLE BEGINDASH 38
7MC "C4'" "O4'" SINGLE NONE 39
7MC "C5'" "O5'" SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7MC MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
7MC adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
7MC amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
7MC imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
7MC peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
7MC purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
7MC pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
7MC ribose F7 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7MC N1 S1 1
7MC C2 S1 1
7MC N3 S1 1
7MC C4 S1 1
7MC C5 S1 1
7MC C6 S1 1
7MC N7 S1 1
7MC C8 S1 1
7MC N9 S1 1
7MC "C1'" S1 1
7MC "C2'" S1 1
7MC "C3'" S1 1
7MC "C4'" S1 1
7MC "O4'" S1 1
7MC N1 F1 1
7MC C6 F1 1
7MC C5 F1 1
7MC C4 F1 1
7MC N3 F1 1
7MC C2 F1 1
7MC N9 F1 1
7MC C8 F1 1
7MC N7 F1 1
7MC N6 F1 1
7MC N F2 1
7MC C36 F2 1
7MC O38 F2 1
7MC C37 F2 1
7MC N8 F2 2
7MC C F2 2
7MC O F2 2
7MC CA F2 2
7MC C4 F3 1
7MC C5 F3 1
7MC N7 F3 1
7MC C8 F3 1
7MC N9 F3 1
7MC O F4 1
7MC C F4 1
7MC CA F4 1
7MC N F4 1
7MC N7 F5 1
7MC C8 F5 1
7MC N9 F5 1
7MC C4 F5 1
7MC C5 F5 1
7MC C6 F5 1
7MC N1 F5 1
7MC C2 F5 1
7MC N3 F5 1
7MC C5 F6 1
7MC C4 F6 1
7MC N3 F6 1
7MC C2 F6 1
7MC N1 F6 1
7MC C6 F6 1
7MC "C2'" F7 1
7MC "C3'" F7 1
7MC "C4'" F7 1
7MC "O4'" F7 1
7MC "C1'" F7 1
7MC "C5'" F7 1
7MC "O5'" F7 1
7MC "O3'" F7 1
7MC "O2'" F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7MC
_pdbe_chem_comp_rdkit_properties.exactmw 560.174
_pdbe_chem_comp_rdkit_properties.amw 560.461
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.579
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 256.154
_pdbe_chem_comp_rdkit_properties.tpsa 276.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.196
_pdbe_chem_comp_rdkit_properties.CrippenMR 123.811
_pdbe_chem_comp_rdkit_properties.chi0v 18.502
_pdbe_chem_comp_rdkit_properties.chi1v 10.415
_pdbe_chem_comp_rdkit_properties.chi2v 4.659
_pdbe_chem_comp_rdkit_properties.chi3v 4.659
_pdbe_chem_comp_rdkit_properties.chi4v 3.018
_pdbe_chem_comp_rdkit_properties.chi0n 46.607
_pdbe_chem_comp_rdkit_properties.chi1n 22.827
_pdbe_chem_comp_rdkit_properties.chi2n 3.589
_pdbe_chem_comp_rdkit_properties.chi3n 3.589
_pdbe_chem_comp_rdkit_properties.chi4n 2.222
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.250
_pdbe_chem_comp_rdkit_properties.kappa1 9.156
_pdbe_chem_comp_rdkit_properties.kappa2 12.530
_pdbe_chem_comp_rdkit_properties.kappa3 6.985
_pdbe_chem_comp_rdkit_properties.Phi 3.019
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7MC UniChem PDBe 7MC
7MC UniChem ZINC ZINC000066166072
7MC UniChem PubChem 51049659
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7MC C -1.743 -1.689 -1.618 ETKDGv3 1
7MC N -2.728 -1.944 0.613 ETKDGv3 2
7MC O -0.969 -2.263 -2.431 ETKDGv3 3
7MC P -0.921 0.738 -2.717 ETKDGv3 4
7MC N1 4.599 -2.145 5.536 ETKDGv3 5
7MC C2 5.506 -1.751 4.672 ETKDGv3 6
7MC N3 5.121 -1.009 3.491 ETKDGv3 7
7MC C4 3.867 -0.699 3.361 ETKDGv3 8
7MC C5 2.869 -1.122 4.273 ETKDGv3 9
7MC C6 3.197 -1.850 5.339 ETKDGv3 10
7MC N6 2.211 -2.357 6.239 ETKDGv3 11
7MC N7 1.591 -0.806 3.739 ETKDGv3 12
7MC C8 1.832 -0.231 2.590 ETKDGv3 13
7MC N8 -1.812 -0.258 -1.578 ETKDGv3 14
7MC N9 3.230 -0.093 2.255 ETKDGv3 15
7MC CA -2.630 -2.527 -0.730 ETKDGv3 16
7MC CB -4.023 -2.734 -1.362 ETKDGv3 17
7MC CG -4.749 -1.450 -1.644 ETKDGv3 18
7MC "C1'" 3.791 0.074 0.915 ETKDGv3 19
7MC O1P -1.325 0.369 -4.128 ETKDGv3 20
7MC "C2'" 3.771 -1.257 0.148 ETKDGv3 21
7MC "O2'" 4.996 -1.493 -0.508 ETKDGv3 22
7MC "C3'" 2.625 -1.067 -0.819 ETKDGv3 23
7MC "O3'" 2.790 -1.769 -2.030 ETKDGv3 24
7MC O31 -1.238 2.391 -2.428 ETKDGv3 25
7MC C32 -2.579 2.660 -2.763 ETKDGv3 26
7MC C33 -2.906 4.118 -2.438 ETKDGv3 27
7MC C34 -2.092 5.090 -3.300 ETKDGv3 28
7MC N35 -2.436 6.468 -2.962 ETKDGv3 29
7MC C36 -1.616 -1.928 1.520 ETKDGv3 30
7MC C37 -1.761 -1.314 2.874 ETKDGv3 31
7MC O38 -0.498 -2.393 1.168 ETKDGv3 32
7MC "C4'" 2.574 0.453 -0.986 ETKDGv3 33
7MC "O4'" 3.037 1.042 0.209 ETKDGv3 34
7MC "C5'" 1.159 0.949 -1.293 ETKDGv3 35
7MC "O5'" 0.744 0.430 -2.535 ETKDGv3 36
7MC OD1 -4.557 -0.798 -2.859 ETKDGv3 37
7MC OD2 -5.517 -0.952 -0.778 ETKDGv3 38
7MC HN -3.639 -1.558 0.948 ETKDGv3 39
7MC H2 6.547 -1.993 4.838 ETKDGv3 40
7MC HN6 1.195 -2.157 6.098 ETKDGv3 41
7MC HN6A 2.501 -2.937 7.057 ETKDGv3 42
7MC H8 1.036 0.095 1.934 ETKDGv3 43
7MC HN8 -2.405 0.216 -0.861 ETKDGv3 44
7MC HA -2.173 -3.538 -0.632 ETKDGv3 45
7MC HB -3.910 -3.295 -2.316 ETKDGv3 46
7MC HBA -4.641 -3.365 -0.687 ETKDGv3 47
7MC "H1'" 4.834 0.447 1.017 ETKDGv3 48
7MC "H2'" 3.565 -2.120 0.820 ETKDGv3 49
7MC "HO2'" 5.223 -0.689 -1.045 ETKDGv3 50
7MC "H3'" 1.693 -1.427 -0.328 ETKDGv3 51
7MC "HO3'" 3.507 -1.333 -2.558 ETKDGv3 52
7MC H32 -2.762 2.487 -3.848 ETKDGv3 53
7MC H32A -3.273 2.022 -2.172 ETKDGv3 54
7MC H33 -2.699 4.310 -1.363 ETKDGv3 55
7MC H33A -3.990 4.290 -2.618 ETKDGv3 56
7MC H34 -2.296 4.905 -4.379 ETKDGv3 57
7MC H34A -1.007 4.933 -3.114 ETKDGv3 58
7MC HN35 -3.408 6.654 -3.300 ETKDGv3 59
7MC HN3A -1.806 7.096 -3.512 ETKDGv3 60
7MC H37 -1.071 -1.804 3.593 ETKDGv3 61
7MC H37A -2.801 -1.440 3.244 ETKDGv3 62
7MC H37B -1.523 -0.232 2.816 ETKDGv3 63
7MC "H4'" 3.249 0.780 -1.809 ETKDGv3 64
7MC "H5'" 1.180 2.061 -1.339 ETKDGv3 65
7MC "H5'A" 0.487 0.634 -0.461 ETKDGv3 66
7MC HOD1 -5.026 0.077 -3.058 ETKDGv3 67
#