data_7NF
#
_chem_comp.id 7NF
_chem_comp.name "2-ethoxycarbonyl-1,3-thiazole-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H7 N O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-11-27
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 201.200
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7NF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5MHN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7NF O11 O1 O 0 1 N N N Y N Y 51.751 72.771 13.654 4.266 0.352 0.006 O11 7NF 1
7NF C47 C1 C 0 1 N N N Y N Y 50.955 72.615 12.739 3.310 -0.399 0.002 C47 7NF 2
7NF C48 C2 C 0 1 Y N N N N N 49.495 72.809 12.956 1.942 0.149 -0.000 C48 7NF 3
7NF N9 N1 N 0 1 Y N N N N N 48.561 72.312 12.056 0.870 -0.618 0.001 N9 7NF 4
7NF C50 C3 C 0 1 Y N N N N N 47.345 72.565 12.490 -0.273 -0.001 -0.000 C50 7NF 5
7NF C51 C4 C 0 1 N N N N N N 46.321 71.949 11.604 -1.593 -0.658 0.001 C51 7NF 6
7NF O10 O2 O 0 1 N N N N N N 45.220 72.416 11.431 -1.668 -1.871 0.004 O10 7NF 7
7NF O9 O3 O 0 1 N N N N N N 46.744 70.810 11.049 -2.716 0.086 -0.000 O9 7NF 8
7NF C52 C5 C 0 1 N N N N N N 45.924 70.265 9.974 -3.980 -0.628 0.001 C52 7NF 9
7NF C53 C6 C 0 1 N N N N N N 44.979 69.391 10.437 -5.134 0.377 -0.001 C53 7NF 10
7NF S S1 S 0 1 Y N N N N N 47.264 73.444 13.976 -0.006 1.738 -0.003 S 7NF 11
7NF C49 C7 C 0 1 Y N N N N N 48.984 73.442 14.041 1.687 1.495 0.003 C49 7NF 12
7NF H2 H2 H 0 1 N N N N N N 46.577 69.737 9.263 -4.044 -1.256 -0.887 H2 7NF 13
7NF H3 H3 H 0 1 N N N N N N 45.417 71.095 9.460 -4.044 -1.252 0.892 H3 7NF 14
7NF H4 H4 H 0 1 N N N N N N 44.388 69.008 9.592 -5.070 1.005 0.888 H4 7NF 15
7NF H5 H5 H 0 1 N N N N N N 45.474 68.552 10.948 -5.070 1.001 -0.892 H5 7NF 16
7NF H6 H6 H 0 1 N N N N N N 44.315 69.910 11.144 -6.083 -0.159 0.000 H6 7NF 17
7NF H7 H7 H 0 1 N N N N N N 49.572 73.882 14.833 2.434 2.276 0.007 H7 7NF 18
7NF OXT OXT O 0 1 N Y N Y N Y 51.334 72.286 11.492 3.501 -1.733 -0.007 O1 7NF 19
7NF H1 H1 H 0 1 N Y N Y N Y 52.280 72.203 11.460 4.416 -2.045 -0.006 H1 7NF 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7NF C52 C53 SING N N 1
7NF C52 O9 SING N N 2
7NF O9 C51 SING N N 3
7NF O10 C51 DOUB N N 4
7NF C51 C50 SING N N 5
7NF N9 C50 DOUB Y N 6
7NF N9 C48 SING Y N 7
7NF C50 S SING Y N 8
7NF C47 C48 SING N N 9
7NF C47 O11 DOUB N N 10
7NF C48 C49 DOUB Y N 11
7NF S C49 SING Y N 12
7NF C52 H2 SING N N 13
7NF C52 H3 SING N N 14
7NF C53 H4 SING N N 15
7NF C53 H5 SING N N 16
7NF C53 H6 SING N N 17
7NF C49 H7 SING N N 18
7NF C47 OXT SING N N 19
7NF OXT H1 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7NF InChI InChI 1.03 InChI=1S/C7H7NO4S/c1-2-12-7(11)5-8-4(3-13-5)6(9)10/h3H,2H2,1H3,(H,9,10)
7NF InChIKey InChI 1.03 CDZCZDWBECKRKA-UHFFFAOYSA-N
7NF SMILES_CANONICAL CACTVS 3.385 CCOC(=O)c1scc(n1)C(O)=O
7NF SMILES CACTVS 3.385 CCOC(=O)c1scc(n1)C(O)=O
7NF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCOC(=O)c1nc(cs1)C(=O)O
7NF SMILES "OpenEye OEToolkits" 2.0.6 CCOC(=O)c1nc(cs1)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id 7NF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "2-ethoxycarbonyl-1,3-thiazole-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7NF 'Create component' 2016-11-27 EBI
7NF 'Other modification' 2016-11-27 EBI
7NF 'Initial release' 2017-12-20 RCSB
7NF 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7NF O11 O 3.884 0.792 1
7NF C47 C 4.999 -0.211 2
7NF C48 C 6.426 0.252 3
7NF N9 N 7.639 -0.630 4
7NF C50 C 8.853 0.252 5
7NF C51 C 10.280 -0.211 6
7NF O10 O 10.591 -1.679 7
7NF O9 O 11.394 0.792 8
7NF C52 C 12.821 0.329 9
7NF C53 C 13.935 1.332 10
7NF S S 8.389 1.679 11
7NF C49 C 6.889 1.679 12
7NF OXT O 4.687 -1.679 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7NF C52 C53 SINGLE NONE 1
7NF C52 O9 SINGLE NONE 2
7NF O9 C51 SINGLE NONE 3
7NF O10 C51 DOUBLE NONE 4
7NF C51 C50 SINGLE NONE 5
7NF N9 C50 DOUBLE NONE 6
7NF N9 C48 SINGLE NONE 7
7NF C50 S SINGLE NONE 8
7NF C47 C48 SINGLE NONE 9
7NF C47 O11 DOUBLE NONE 10
7NF C48 C49 DOUBLE NONE 11
7NF S C49 SINGLE NONE 12
7NF C47 OXT SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7NF MurckoScaffold S1 scaffold c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
7NF thiazole F1 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7NF C48 S1 1
7NF N9 S1 1
7NF C50 S1 1
7NF S S1 1
7NF C49 S1 1
7NF C49 F1 1
7NF C48 F1 1
7NF N9 F1 1
7NF C50 F1 1
7NF S F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7NF
_pdbe_chem_comp_rdkit_properties.exactmw 201.010
_pdbe_chem_comp_rdkit_properties.amw 201.203
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 87.903
_pdbe_chem_comp_rdkit_properties.tpsa 76.490
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.909
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.498
_pdbe_chem_comp_rdkit_properties.chi0v 6.805
_pdbe_chem_comp_rdkit_properties.chi1v 3.693
_pdbe_chem_comp_rdkit_properties.chi2v 1.716
_pdbe_chem_comp_rdkit_properties.chi3v 1.716
_pdbe_chem_comp_rdkit_properties.chi4v 1.093
_pdbe_chem_comp_rdkit_properties.chi0n 12.988
_pdbe_chem_comp_rdkit_properties.chi1n 6.284
_pdbe_chem_comp_rdkit_properties.chi2n 0.969
_pdbe_chem_comp_rdkit_properties.chi3n 0.969
_pdbe_chem_comp_rdkit_properties.chi4n 0.508
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.430
_pdbe_chem_comp_rdkit_properties.kappa1 3.749
_pdbe_chem_comp_rdkit_properties.kappa2 3.993
_pdbe_chem_comp_rdkit_properties.kappa3 2.251
_pdbe_chem_comp_rdkit_properties.Phi 1.151
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7NF UniChem PDBe 7NF
7NF UniChem ZINC ZINC000040435366
7NF UniChem eMolecules 36008842
7NF UniChem 'EPA CompTox Dashboard' DTXSID00705346
7NF UniChem ChemicalBook CB22079578
7NF UniChem Nikkaji J2.906.365F
7NF UniChem SureChEMBL SCHEMBL2725354
7NF UniChem PubChem 53487863
7NF UniChem Mcule MCULE-5203719382
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7NF O11 4.862 -0.859 -0.375 ETKDGv3 1
7NF C47 3.711 -0.641 0.091 ETKDGv3 2
7NF C48 2.606 -0.249 -0.795 ETKDGv3 3
7NF N9 1.288 0.003 -0.276 ETKDGv3 4
7NF C50 0.439 0.337 -1.195 ETKDGv3 5
7NF C51 -0.965 0.640 -0.907 ETKDGv3 6
7NF O10 -1.740 0.961 -1.848 ETKDGv3 7
7NF O9 -1.428 0.576 0.412 ETKDGv3 8
7NF C52 -2.787 0.807 0.779 ETKDGv3 9
7NF C53 -3.652 -0.396 0.423 ETKDGv3 10
7NF S 1.174 0.378 -2.816 ETKDGv3 11
7NF C49 2.740 -0.101 -2.117 ETKDGv3 12
7NF H2 -3.173 1.722 0.281 ETKDGv3 13
7NF H3 -2.834 0.967 1.877 ETKDGv3 14
7NF H4 -3.661 -0.555 -0.676 ETKDGv3 15
7NF H5 -4.694 -0.222 0.766 ETKDGv3 16
7NF H6 -3.257 -1.307 0.920 ETKDGv3 17
7NF H7 3.655 -0.249 -2.675 ETKDGv3 18
7NF OXT 3.484 -0.772 1.457 ETKDGv3 19
7NF H1 4.231 -1.041 2.085 ETKDGv3 20
#