data_7SN
#
_chem_comp.id 7SN
_chem_comp.name
"[(2R,3S,4R,5R)-5-(2-azanyl-5-carbamimidoyl-4-oxidanylidene-3H-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type "RNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C12 H17 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms "archaeosine-5'-monophosphate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-20
_chem_comp.pdbx_modified_date 2022-04-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 404.273
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7SN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7VNV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7SN N3 N1 N 0 1 N N N N N N -125.709 22.886 30.054 3.174 1.569 0.796 N3 7SN 1
7SN C4 C1 C 0 1 Y N N N N N -124.666 22.319 30.691 2.562 0.465 0.342 C4 7SN 2
7SN N2 N2 N 0 1 N N N N N N -127.684 22.415 28.964 5.045 2.738 1.494 N2 7SN 3
7SN C7 C2 C 0 1 Y N N N N N -123.264 20.816 31.639 2.379 -1.708 -0.373 C7 7SN 4
7SN C6 C3 C 0 1 N N N N N N -125.420 20.033 30.480 4.707 -0.662 0.366 C6 7SN 5
7SN C8 C4 C 0 1 Y N N N N N -122.787 22.024 31.796 1.156 -1.115 -0.403 C8 7SN 6
7SN C2 C5 C 0 1 N N N N N N -126.594 22.002 29.627 4.467 1.583 1.030 C2 7SN 7
7SN C5 C6 C 0 1 Y N N N N N -124.454 20.980 30.944 3.320 -0.688 0.113 C5 7SN 8
7SN N1 N3 N 0 1 N N N N N N -126.477 20.648 29.815 5.252 0.488 0.825 N1 7SN 9
7SN "C1'" C7 C 0 1 N N R N N N -123.358 24.449 31.239 0.150 1.120 0.121 "C1'" 7SN 10
7SN "C2'" C8 C 0 1 N N R N N N -124.068 25.170 32.389 0.010 1.927 -1.188 "C2'" 7SN 11
7SN "C3'" C9 C 0 1 N N S N N N -122.933 25.405 33.387 -1.517 2.082 -1.372 "C3'" 7SN 12
7SN "C4'" C10 C 0 1 N N R N N N -121.705 25.539 32.501 -2.118 1.350 -0.152 "C4'" 7SN 13
7SN "C5'" C11 C 0 1 N N N N N N -120.399 25.145 33.148 -3.398 0.613 -0.550 "C5'" 7SN 14
7SN CA7 C12 C 0 1 N N N N N N -122.574 19.603 32.125 2.698 -3.098 -0.752 CA7 7SN 15
7SN N71 N4 N 0 1 N N N N N N -123.180 18.413 31.998 3.927 -3.531 -0.671 N71 7SN 16
7SN N72 N5 N 0 1 N N N N N N -121.346 19.685 32.665 1.699 -3.939 -1.194 N72 7SN 17
7SN N9 N6 N 0 1 Y N N N N N -123.590 22.988 31.247 1.266 0.176 0.022 N9 7SN 18
7SN "O2'" O1 O 0 1 N N N N N N -124.567 26.406 31.910 0.631 3.207 -1.056 "O2'" 7SN 19
7SN "O3'" O2 O 0 1 N N N N N N -123.121 26.587 34.151 -1.885 3.463 -1.359 "O3'" 7SN 20
7SN "O4'" O3 O 0 1 N N N N N N -121.975 24.691 31.360 -1.100 0.408 0.252 "O4'" 7SN 21
7SN "O5'" O4 O 0 1 N N N N N N -120.487 23.843 33.702 -4.000 0.041 0.613 "O5'" 7SN 22
7SN O6 O5 O 0 1 N N N N N N -125.433 18.800 30.602 5.396 -1.650 0.179 O6 7SN 23
7SN OP1 O6 O 0 1 N N N N N N -118.395 23.531 35.053 -6.426 -0.003 -0.082 OP1 7SN 24
7SN OP2 O7 O 0 1 N N N N N N -119.698 21.555 34.081 -5.129 -2.159 -0.279 OP2 7SN 25
7SN P P1 P 0 1 N N N N N N -119.193 22.944 33.946 -5.367 -0.809 0.564 P 7SN 26
7SN H1 H1 H 0 1 N N N N N N -127.826 23.390 28.794 5.998 2.765 1.672 H1 7SN 27
7SN H2 H2 H 0 1 N N N N N N -128.355 21.748 28.640 4.500 3.526 1.645 H2 7SN 28
7SN H3 H3 H 0 1 N N N N N N -121.859 22.238 32.305 0.239 -1.592 -0.715 H3 7SN 29
7SN H4 H4 H 0 1 N N N N N N -127.201 20.063 29.449 6.203 0.533 1.008 H4 7SN 30
7SN H5 H5 H 0 1 N N N N N N -123.729 24.864 30.290 0.295 1.790 0.969 H5 7SN 31
7SN H6 H6 H 0 1 N N N N N N -124.853 24.535 32.827 0.441 1.377 -2.024 H6 7SN 32
7SN H7 H7 H 0 1 N N N N N N -122.826 24.525 34.038 -1.840 1.611 -2.300 H7 7SN 33
7SN H8 H8 H 0 1 N N N N N N -121.629 26.585 32.169 -2.323 2.058 0.652 H8 7SN 34
7SN H9 H9 H 0 1 N N N N N N -119.601 25.162 32.391 -4.093 1.315 -1.011 H9 7SN 35
7SN H10 H10 H 0 1 N N N N N N -120.161 25.862 33.947 -3.156 -0.177 -1.260 H10 7SN 36
7SN H11 H11 H 0 1 N N N N N N -122.613 17.665 32.343 4.136 -4.445 -0.920 H11 7SN 37
7SN H12 H12 H 0 1 N N N N N N -120.880 18.856 32.974 0.785 -3.617 -1.254 H12 7SN 38
7SN H13 H13 H 0 1 N N N N N N -120.899 20.575 32.757 1.908 -4.853 -1.443 H13 7SN 39
7SN H14 H14 H 0 1 N N N N N N -125.010 26.864 32.615 0.573 3.756 -1.850 H14 7SN 40
7SN H15 H15 H 0 1 N N N N N N -122.396 26.693 34.755 -1.485 3.983 -2.070 H15 7SN 41
7SN H17 H17 H 0 1 N N N N N N -119.425 21.198 34.918 -4.446 -2.737 0.088 H17 7SN 42
7SN OP3 OP3 O 0 1 N Y N N N N -118.333 23.084 32.597 -5.818 -1.185 2.063 OP3 7SN 43
7SN H16 H16 H 0 1 N Y N N N N -117.505 23.508 32.791 -6.636 -1.698 2.111 H16 7SN 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7SN N2 C2 SING N N 1
7SN C2 N1 SING N N 2
7SN C2 N3 DOUB N N 3
7SN N1 C6 SING N N 4
7SN N3 C4 SING N N 5
7SN C6 O6 DOUB N N 6
7SN C6 C5 SING N N 7
7SN C4 C5 DOUB Y N 8
7SN C4 N9 SING Y N 9
7SN C5 C7 SING Y N 10
7SN "C1'" N9 SING N N 11
7SN "C1'" "O4'" SING N N 12
7SN "C1'" "C2'" SING N N 13
7SN N9 C8 SING Y N 14
7SN "O4'" "C4'" SING N N 15
7SN C7 C8 DOUB Y N 16
7SN C7 CA7 SING N N 17
7SN "O2'" "C2'" SING N N 18
7SN N71 CA7 DOUB N N 19
7SN CA7 N72 SING N N 20
7SN "C2'" "C3'" SING N N 21
7SN "C4'" "C5'" SING N N 22
7SN "C4'" "C3'" SING N N 23
7SN "C5'" "O5'" SING N N 24
7SN "C3'" "O3'" SING N N 25
7SN "O5'" P SING N N 26
7SN P OP2 SING N N 27
7SN P OP1 DOUB N N 28
7SN N2 H1 SING N N 29
7SN N2 H2 SING N N 30
7SN C8 H3 SING N N 31
7SN N1 H4 SING N N 32
7SN "C1'" H5 SING N N 33
7SN "C2'" H6 SING N N 34
7SN "C3'" H7 SING N N 35
7SN "C4'" H8 SING N N 36
7SN "C5'" H9 SING N N 37
7SN "C5'" H10 SING N N 38
7SN N71 H11 SING N N 39
7SN N72 H12 SING N N 40
7SN N72 H13 SING N N 41
7SN "O2'" H14 SING N N 42
7SN "O3'" H15 SING N N 43
7SN OP2 H17 SING N N 44
7SN P OP3 SING N N 45
7SN OP3 H16 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7SN InChI InChI 1.03 InChI=1S/C12H17N6O8P/c13-8(14)3-1-18(9-5(3)10(21)17-12(15)16-9)11-7(20)6(19)4(26-11)2-25-27(22,23)24/h1,4,6-7,11,19-20H,2H2,(H3,13,14)(H2,22,23,24)(H3,15,16,17,21)/t4-,6-,7-,11-/m1/s1
7SN InChIKey InChI 1.03 ALFWBBQGYCDFHE-RPKMEZRRSA-N
7SN SMILES_CANONICAL CACTVS 3.385 NC(=N)c1cn([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3N=C(N)NC(=O)c13
7SN SMILES CACTVS 3.385 NC(=N)c1cn([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3N=C(N)NC(=O)c13
7SN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\c1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)/N"
7SN SMILES "OpenEye OEToolkits" 2.0.7 c1c(c2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N)C(=N)N
#
_pdbx_chem_comp_identifier.comp_id 7SN
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-5-carbamimidoyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 7SN
_pdbx_chem_comp_synonyms.name "archaeosine-5'-monophosphate"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7SN 'Create component' 2021-10-20 PDBJ
7SN 'Initial release' 2022-05-04 RCSB
#
_pdbe_chem_comp_synonyms.comp_id 7SN
_pdbe_chem_comp_synonyms.name "archaeosine-5'-monophosphate"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7SN N3 N 6.404 -0.228 1
7SN C4 C 7.702 0.522 2
7SN N2 N 3.805 -0.228 3
7SN C7 C 9.122 2.479 4
7SN C6 C 6.404 2.772 5
7SN C8 C 9.997 1.272 6
7SN C2 C 5.104 0.522 7
7SN C5 C 7.702 2.022 8
7SN N1 N 5.104 2.022 9
7SN "C1'" C 9.588 -1.361 10
7SN "C2'" C 8.708 -2.576 11
7SN "C3'" C 9.592 -3.788 12
7SN "C4'" C 11.018 -3.322 13
7SN "C5'" C 12.233 -4.202 14
7SN CA7 C 9.588 3.905 15
7SN N71 N 11.056 4.214 16
7SN N72 N 8.586 5.021 17
7SN N9 N 9.122 0.065 18
7SN "O2'" O 7.208 -2.579 19
7SN "O3'" O 9.131 -5.215 20
7SN "O4'" O 11.015 -1.822 21
7SN "O5'" O 13.602 -3.589 22
7SN O6 O 6.404 4.272 23
7SN OP1 O 15.697 -3.253 24
7SN OP2 O 16.032 -5.348 25
7SN P P 14.817 -4.469 26
7SN H11 H 11.522 5.640 27
7SN OP3 O 13.938 -5.684 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7SN N2 C2 SINGLE NONE 1
7SN C2 N1 SINGLE NONE 2
7SN C2 N3 DOUBLE NONE 3
7SN N1 C6 SINGLE NONE 4
7SN N3 C4 SINGLE NONE 5
7SN C6 O6 DOUBLE NONE 6
7SN C6 C5 SINGLE NONE 7
7SN C4 C5 DOUBLE NONE 8
7SN C4 N9 SINGLE NONE 9
7SN C5 C7 SINGLE NONE 10
7SN "C1'" N9 SINGLE BEGINDASH 11
7SN "C1'" "O4'" SINGLE NONE 12
7SN "C1'" "C2'" SINGLE NONE 13
7SN N9 C8 SINGLE NONE 14
7SN "O4'" "C4'" SINGLE NONE 15
7SN C7 C8 DOUBLE NONE 16
7SN C7 CA7 SINGLE ENDDOWNRIGHT 17
7SN "C2'" "O2'" SINGLE BEGINWEDGE 18
7SN N71 CA7 DOUBLE NONE 19
7SN CA7 N72 SINGLE ENDDOWNRIGHT 20
7SN "C2'" "C3'" SINGLE NONE 21
7SN "C4'" "C5'" SINGLE BEGINDASH 22
7SN "C4'" "C3'" SINGLE NONE 23
7SN "C5'" "O5'" SINGLE NONE 24
7SN "C3'" "O3'" SINGLE BEGINWEDGE 25
7SN "O5'" P SINGLE NONE 26
7SN P OP2 SINGLE NONE 27
7SN P OP1 DOUBLE NONE 28
7SN P OP3 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7SN MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ccn2[C@H]1CCCO1' InChI=1S/C10H11N3O2/c14-10-7-3-4-13(8-2-1-5-15-8)9(7)11-6-12-10/h3-4,6,8H,1-2,5H2,(H,11,12,14)/t8-/m1/s1 KMILJNWZZSWZDI-MRVPVSSYSA-N
7SN phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
7SN pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
7SN pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
7SN ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7SN N3 S1 1
7SN C4 S1 1
7SN C7 S1 1
7SN C6 S1 1
7SN C8 S1 1
7SN C2 S1 1
7SN C5 S1 1
7SN N1 S1 1
7SN "C1'" S1 1
7SN "C2'" S1 1
7SN "C3'" S1 1
7SN "C4'" S1 1
7SN N9 S1 1
7SN "O4'" S1 1
7SN O6 S1 1
7SN "O5'" F1 1
7SN P F1 1
7SN OP1 F1 1
7SN OP2 F1 1
7SN H2 F1 1
7SN C5 F2 1
7SN C6 F2 1
7SN N1 F2 1
7SN C2 F2 1
7SN N3 F2 1
7SN C4 F2 1
7SN C4 F3 1
7SN C5 F3 1
7SN C7 F3 1
7SN C8 F3 1
7SN N9 F3 1
7SN "C2'" F4 1
7SN "C3'" F4 1
7SN "C4'" F4 1
7SN "O4'" F4 1
7SN "C1'" F4 1
7SN "C5'" F4 1
7SN "O5'" F4 1
7SN "O3'" F4 1
7SN "O2'" F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7SN
_pdbe_chem_comp_rdkit_properties.exactmw 404.085
_pdbe_chem_comp_rdkit_properties.amw 404.276
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 44
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 174.215
_pdbe_chem_comp_rdkit_properties.tpsa 243.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.644
_pdbe_chem_comp_rdkit_properties.CrippenMR 86.514
_pdbe_chem_comp_rdkit_properties.chi0v 13.291
_pdbe_chem_comp_rdkit_properties.chi1v 7.902
_pdbe_chem_comp_rdkit_properties.chi2v 3.328
_pdbe_chem_comp_rdkit_properties.chi3v 3.328
_pdbe_chem_comp_rdkit_properties.chi4v 2.224
_pdbe_chem_comp_rdkit_properties.chi0n 29.396
_pdbe_chem_comp_rdkit_properties.chi1n 14.257
_pdbe_chem_comp_rdkit_properties.chi2n 3.013
_pdbe_chem_comp_rdkit_properties.chi3n 3.013
_pdbe_chem_comp_rdkit_properties.chi4n 2.029
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.320
_pdbe_chem_comp_rdkit_properties.kappa1 7.253
_pdbe_chem_comp_rdkit_properties.kappa2 6.687
_pdbe_chem_comp_rdkit_properties.kappa3 3.590
_pdbe_chem_comp_rdkit_properties.Phi 1.796
#
_pdbe_chem_comp_external_mappings.comp_id 7SN
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 7SN
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7SN N3 -2.927 -2.168 0.155 ETKDGv3 1
7SN C4 -2.380 -0.857 -0.052 ETKDGv3 2
7SN N2 -4.649 -3.775 -0.052 ETKDGv3 3
7SN C7 -2.143 1.273 -0.736 ETKDGv3 4
7SN C6 -4.394 -0.157 -1.160 ETKDGv3 5
7SN C8 -1.012 0.917 -0.117 ETKDGv3 6
7SN C2 -4.127 -2.465 -0.269 ETKDGv3 7
7SN C5 -3.030 0.099 -0.683 ETKDGv3 8
7SN N1 -4.925 -1.473 -0.949 ETKDGv3 9
7SN "C1'" 0.026 -1.287 0.736 ETKDGv3 10
7SN "C2'" 0.730 -1.817 -0.522 ETKDGv3 11
7SN "C3'" 1.988 -0.983 -0.575 ETKDGv3 12
7SN "C4'" 2.208 -0.612 0.893 ETKDGv3 13
7SN "C5'" 2.926 0.731 1.052 ETKDGv3 14
7SN CA7 -2.365 2.562 -1.425 ETKDGv3 15
7SN N71 -3.244 2.641 -2.373 ETKDGv3 16
7SN N72 -1.597 3.718 -1.072 ETKDGv3 17
7SN N9 -1.097 -0.423 0.372 ETKDGv3 18
7SN "O2'" 1.001 -3.197 -0.419 ETKDGv3 19
7SN "O3'" 3.081 -1.651 -1.163 ETKDGv3 20
7SN "O4'" 0.946 -0.553 1.523 ETKDGv3 21
7SN "O5'" 4.208 0.648 0.474 ETKDGv3 22
7SN O6 -5.090 0.735 -1.711 ETKDGv3 23
7SN OP1 4.208 3.187 -0.240 ETKDGv3 24
7SN OP2 6.545 2.059 0.030 ETKDGv3 25
7SN P 4.956 2.176 0.600 ETKDGv3 26
7SN H1 -4.079 -4.498 0.440 ETKDGv3 27
7SN H2 -5.606 -4.024 -0.385 ETKDGv3 28
7SN H3 -0.121 1.526 -0.046 ETKDGv3 29
7SN H4 -5.889 -1.707 -1.278 ETKDGv3 30
7SN H5 -0.363 -2.130 1.348 ETKDGv3 31
7SN H6 0.121 -1.650 -1.438 ETKDGv3 32
7SN H7 1.775 -0.066 -1.170 ETKDGv3 33
7SN H8 2.808 -1.395 1.409 ETKDGv3 34
7SN H9 2.314 1.526 0.568 ETKDGv3 35
7SN H10 3.008 0.948 2.141 ETKDGv3 36
7SN H11 -3.420 3.533 -2.887 ETKDGv3 37
7SN H12 -0.936 3.704 -0.265 ETKDGv3 38
7SN H13 -1.720 4.617 -1.589 ETKDGv3 39
7SN H14 1.471 -3.360 0.440 ETKDGv3 40
7SN H15 3.393 -2.361 -0.544 ETKDGv3 41
7SN H17 6.955 1.339 0.574 ETKDGv3 42
7SN OP3 4.981 2.692 2.212 ETKDGv3 43
7SN H16 5.466 1.977 2.697 ETKDGv3 44
#