data_7UZ
#
_chem_comp.id 7UZ
_chem_comp.name "2-(cyclohexylmethyl)propanedioic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-09
_chem_comp.pdbx_modified_date 2014-02-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 200.232
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7UZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CIB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7UZ C1 C1 C 0 1 N N N N N N -32.039 13.191 15.807 1.434 1.229 0.299 C1 7UZ 1
7UZ O2 O2 O 0 1 N N N N N N -31.101 13.891 16.278 2.364 2.051 -0.212 O2 7UZ 2
7UZ O3 O3 O 0 1 N N N N N N -33.046 13.649 15.185 0.760 1.587 1.235 O3 7UZ 3
7UZ C4 C4 C 0 1 N N N N N N -31.939 11.655 15.951 1.225 -0.138 -0.301 C4 7UZ 4
7UZ C5 C5 C 0 1 N N N N N N -31.298 11.092 14.672 2.504 -0.930 -0.203 C5 7UZ 5
7UZ O6 O6 O 0 1 N N N N N N -30.129 10.654 14.749 3.619 -0.481 -0.800 O6 7UZ 6
7UZ O7 O7 O 0 1 N N N N N N -31.999 11.116 13.631 2.525 -1.969 0.413 O7 7UZ 7
7UZ C8 C8 C 0 1 N N N N N N -33.348 11.044 16.147 0.115 -0.865 0.461 C8 7UZ 8
7UZ C10 C10 C 0 1 N N N N N N -33.372 9.484 16.095 -1.210 -0.127 0.258 C10 7UZ 9
7UZ C13 C13 C 0 1 N N N N N N -32.445 8.851 17.139 -1.615 -0.202 -1.215 C13 7UZ 10
7UZ C14 C14 C 0 1 N N N N N N -32.535 7.297 17.179 -2.940 0.535 -1.418 C14 7UZ 11
7UZ C15 C15 C 0 1 N N N N N N -33.985 6.831 17.309 -4.024 -0.118 -0.558 C15 7UZ 12
7UZ C16 C16 C 0 1 N N N N N N -34.905 7.481 16.253 -3.619 -0.043 0.915 C16 7UZ 13
7UZ C17 C17 C 0 1 N N N N N N -34.828 9.016 16.330 -2.294 -0.780 1.118 C17 7UZ 14
7UZ HO2 HO2 H 0 1 N N N N N N -31.267 14.808 16.095 2.461 2.918 0.206 HO2 7UZ 15
7UZ H4 H4 H 0 1 N N N N N N -31.309 11.408 16.818 0.941 -0.036 -1.348 H4 7UZ 16
7UZ HO6 HO6 H 0 1 N N N N N N -29.851 10.341 13.896 4.414 -1.023 -0.709 HO6 7UZ 17
7UZ H8 H8 H 0 1 N N N N N N -33.731 11.364 17.127 0.025 -1.884 0.086 H8 7UZ 18
7UZ H8A H8A H 0 1 N N N N N N -34.006 11.427 15.353 0.359 -0.888 1.523 H8A 7UZ 19
7UZ H10 H10 H 0 1 N N N N N N -33.054 9.161 15.093 -1.094 0.916 0.551 H10 7UZ 20
7UZ H13 H13 H 0 1 N N N N N N -31.409 9.135 16.904 -0.842 0.263 -1.828 H13 7UZ 21
7UZ H13A H13A H 0 0 N N N N N N -32.717 9.242 18.130 -1.731 -1.245 -1.508 H13A 7UZ 22
7UZ H14 H14 H 0 1 N N N N N N -32.109 6.889 16.251 -2.823 1.579 -1.126 H14 7UZ 23
7UZ H14A H14A H 0 0 N N N N N N -31.960 6.926 18.041 -3.228 0.482 -2.468 H14A 7UZ 24
7UZ H15 H15 H 0 1 N N N N N N -34.018 5.739 17.183 -4.968 0.408 -0.703 H15 7UZ 25
7UZ H15A H15A H 0 0 N N N N N N -34.354 7.096 18.311 -4.140 -1.161 -0.851 H15A 7UZ 26
7UZ H16 H16 H 0 1 N N N N N N -34.591 7.154 15.251 -3.503 1.000 1.208 H16 7UZ 27
7UZ H16A H16A H 0 0 N N N N N N -35.942 7.163 16.434 -4.391 -0.508 1.528 H16A 7UZ 28
7UZ H17 H17 H 0 1 N N N N N N -35.162 9.348 17.324 -2.410 -1.824 0.826 H17 7UZ 29
7UZ H17A H17A H 0 0 N N N N N N -35.480 9.453 15.559 -2.005 -0.727 2.168 H17A 7UZ 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7UZ O3 C1 DOUB N N 1
7UZ C1 C4 SING N N 2
7UZ C1 O2 SING N N 3
7UZ O2 HO2 SING N N 4
7UZ C5 C4 SING N N 5
7UZ C4 C8 SING N N 6
7UZ C4 H4 SING N N 7
7UZ O7 C5 DOUB N N 8
7UZ C5 O6 SING N N 9
7UZ O6 HO6 SING N N 10
7UZ C10 C8 SING N N 11
7UZ C8 H8 SING N N 12
7UZ C8 H8A SING N N 13
7UZ C10 C17 SING N N 14
7UZ C10 C13 SING N N 15
7UZ C10 H10 SING N N 16
7UZ C13 C14 SING N N 17
7UZ C13 H13 SING N N 18
7UZ C13 H13A SING N N 19
7UZ C14 C15 SING N N 20
7UZ C14 H14 SING N N 21
7UZ C14 H14A SING N N 22
7UZ C16 C15 SING N N 23
7UZ C15 H15 SING N N 24
7UZ C15 H15A SING N N 25
7UZ C16 C17 SING N N 26
7UZ C16 H16 SING N N 27
7UZ C16 H16A SING N N 28
7UZ C17 H17 SING N N 29
7UZ C17 H17A SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7UZ SMILES ACDLabs 12.01 O=C(O)C(C(=O)O)CC1CCCCC1
7UZ InChI InChI 1.03 InChI=1S/C10H16O4/c11-9(12)8(10(13)14)6-7-4-2-1-3-5-7/h7-8H,1-6H2,(H,11,12)(H,13,14)
7UZ InChIKey InChI 1.03 PYKSXWASTAWCSS-UHFFFAOYSA-N
7UZ SMILES_CANONICAL CACTVS 3.385 OC(=O)C(CC1CCCCC1)C(O)=O
7UZ SMILES CACTVS 3.385 OC(=O)C(CC1CCCCC1)C(O)=O
7UZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1CCC(CC1)CC(C(=O)O)C(=O)O
7UZ SMILES "OpenEye OEToolkits" 1.7.6 C1CCC(CC1)CC(C(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7UZ "SYSTEMATIC NAME" ACDLabs 12.01 "(cyclohexylmethyl)propanedioic acid"
7UZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-(cyclohexylmethyl)propanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7UZ 'Create component' 2013-12-09 EBI
7UZ 'Initial release' 2014-02-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7UZ C1 C 5.598 2.535 1
7UZ O2 O 6.897 3.285 2
7UZ O3 O 4.299 3.285 3
7UZ C4 C 5.598 1.035 4
7UZ C5 C 6.897 0.285 5
7UZ O6 O 6.897 -1.215 6
7UZ O7 O 8.196 1.035 7
7UZ C8 C 4.299 0.285 8
7UZ C10 C 4.299 -1.215 9
7UZ C13 C 5.598 -1.965 10
7UZ C14 C 5.598 -3.465 11
7UZ C15 C 4.299 -4.215 12
7UZ C16 C 3.000 -3.465 13
7UZ C17 C 3.000 -1.965 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7UZ O3 C1 DOUBLE NONE 1
7UZ C1 C4 SINGLE NONE 2
7UZ C1 O2 SINGLE NONE 3
7UZ C5 C4 SINGLE NONE 4
7UZ C4 C8 SINGLE NONE 5
7UZ O7 C5 DOUBLE NONE 6
7UZ C5 O6 SINGLE NONE 7
7UZ C10 C8 SINGLE NONE 8
7UZ C10 C17 SINGLE NONE 9
7UZ C10 C13 SINGLE NONE 10
7UZ C13 C14 SINGLE NONE 11
7UZ C14 C15 SINGLE NONE 12
7UZ C16 C15 SINGLE NONE 13
7UZ C16 C17 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7UZ MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
7UZ cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7UZ C10 S1 1
7UZ C13 S1 1
7UZ C14 S1 1
7UZ C15 S1 1
7UZ C16 S1 1
7UZ C17 S1 1
7UZ C10 F1 1
7UZ C17 F1 1
7UZ C16 F1 1
7UZ C15 F1 1
7UZ C14 F1 1
7UZ C13 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7UZ
_pdbe_chem_comp_rdkit_properties.exactmw 200.105
_pdbe_chem_comp_rdkit_properties.amw 200.234
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.800
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 105.582
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.742
_pdbe_chem_comp_rdkit_properties.CrippenMR 49.954
_pdbe_chem_comp_rdkit_properties.chi0v 6.633
_pdbe_chem_comp_rdkit_properties.chi1v 3.316
_pdbe_chem_comp_rdkit_properties.chi2v 1.158
_pdbe_chem_comp_rdkit_properties.chi3v 1.158
_pdbe_chem_comp_rdkit_properties.chi4v 0.623
_pdbe_chem_comp_rdkit_properties.chi0n 22.633
_pdbe_chem_comp_rdkit_properties.chi1n 11.133
_pdbe_chem_comp_rdkit_properties.chi2n 1.158
_pdbe_chem_comp_rdkit_properties.chi3n 1.158
_pdbe_chem_comp_rdkit_properties.chi4n 0.623
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 2.203
_pdbe_chem_comp_rdkit_properties.kappa2 4.980
_pdbe_chem_comp_rdkit_properties.kappa3 3.013
_pdbe_chem_comp_rdkit_properties.Phi 0.783
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7UZ UniChem PDBe 7UZ
7UZ UniChem ZINC ZINC000000156783
7UZ UniChem SureChEMBL SCHEMBL1733951
7UZ UniChem PubChem 6931613
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7UZ C1 -2.380 1.009 0.304 ETKDGv3 1
7UZ O2 -2.678 2.104 -0.502 ETKDGv3 2
7UZ O3 -2.352 1.143 1.557 ETKDGv3 3
7UZ C4 -2.124 -0.332 -0.327 ETKDGv3 4
7UZ C5 -3.276 -1.247 -0.013 ETKDGv3 5
7UZ O6 -4.173 -1.597 -1.017 ETKDGv3 6
7UZ O7 -3.444 -1.683 1.158 ETKDGv3 7
7UZ C8 -0.782 -0.960 0.131 ETKDGv3 8
7UZ C10 0.464 -0.371 -0.581 ETKDGv3 9
7UZ C13 1.721 -1.247 -0.308 ETKDGv3 10
7UZ C14 2.551 -0.711 0.863 ETKDGv3 11
7UZ C15 3.079 0.710 0.581 ETKDGv3 12
7UZ C16 2.168 1.523 -0.359 ETKDGv3 13
7UZ C17 0.698 1.118 -0.205 ETKDGv3 14
7UZ HO2 -2.860 3.014 -0.095 ETKDGv3 15
7UZ H4 -2.092 -0.202 -1.431 ETKDGv3 16
7UZ HO6 -4.959 -2.205 -0.822 ETKDGv3 17
7UZ H8 -0.825 -2.046 -0.108 ETKDGv3 18
7UZ H8A -0.667 -0.881 1.234 ETKDGv3 19
7UZ H10 0.279 -0.420 -1.678 ETKDGv3 20
7UZ H13 1.447 -2.305 -0.109 ETKDGv3 21
7UZ H13A 2.364 -1.257 -1.217 ETKDGv3 22
7UZ H14 3.408 -1.392 1.056 ETKDGv3 23
7UZ H14A 1.919 -0.699 1.778 ETKDGv3 24
7UZ H15 3.186 1.248 1.548 ETKDGv3 25
7UZ H15A 4.091 0.645 0.125 ETKDGv3 26
7UZ H16 2.479 1.360 -1.415 ETKDGv3 27
7UZ H16A 2.281 2.607 -0.140 ETKDGv3 28
7UZ H17 0.399 1.307 0.850 ETKDGv3 29
7UZ H17A 0.078 1.768 -0.858 ETKDGv3 30
#