data_7WN
#
_chem_comp.id 7WN
_chem_comp.name 4-chloro-2-methyl-5-[(1,2,3,4-tetrahydroisoquinolin-7-yl)amino]pyridazin-3(2H)-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H15 Cl N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-08-23
_chem_comp.pdbx_modified_date 2022-08-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 290.748
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7WN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7RWO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7WN N11 N1 N 0 1 N N N N N N 3.898 2.342 -3.103 5.706 0.180 0.535 N11 7WN 1
7WN C12 C1 C 0 1 N N N N N N 3.832 1.036 -3.775 5.711 -0.274 -0.865 C12 7WN 2
7WN C13 C2 C 0 1 N N N N N N 5.046 0.173 -3.486 4.577 -1.282 -1.052 C13 7WN 3
7WN C14 C3 C 0 1 Y N N N N N 5.455 0.185 -2.054 3.288 -0.713 -0.515 C14 7WN 4
7WN C15 C4 C 0 1 Y N N N N N 6.354 -0.832 -1.607 2.094 -1.301 -0.904 C15 7WN 5
7WN C16 C5 C 0 1 Y N N N N N 6.741 -0.881 -0.285 0.891 -0.817 -0.434 C16 7WN 6
7WN C17 C6 C 0 1 N N N N N N 5.546 -2.040 2.697 -1.675 -1.256 1.059 C17 7WN 7
7WN C02 C7 C 0 1 N N N N N N 6.333 -1.584 5.266 -3.734 0.009 -0.267 C02 7WN 8
7WN C03 C8 C 0 1 N N N N N N 6.737 -0.684 4.287 -2.551 0.720 -0.013 C03 7WN 9
7WN C05 C9 C 0 1 N N N N N N 6.332 -0.928 2.966 -1.518 0.086 0.652 C05 7WN 10
7WN C07 C10 C 0 1 Y N N N N N 6.283 0.044 0.590 0.876 0.267 0.435 C07 7WN 11
7WN C08 C11 C 0 1 Y N N N N N 5.423 1.039 0.171 2.072 0.855 0.822 C08 7WN 12
7WN C09 C12 C 0 1 Y N N N N N 5.000 1.075 -1.196 3.278 0.366 0.345 C09 7WN 13
7WN C10 C13 C 0 1 N N N N N N 4.024 2.214 -1.617 4.548 1.046 0.784 C10 7WN 14
7WN C20 C14 C 0 1 N N N N N N 5.204 -3.559 6.003 -5.074 -2.017 -0.125 C20 7WN 15
7WN N06 N2 N 0 1 N N N N N N 6.721 0.023 1.963 -0.338 0.763 0.918 N06 7WN 16
7WN N18 N3 N 0 1 N N N N N N 5.238 -2.842 3.690 -2.784 -1.895 0.811 N18 7WN 17
7WN N19 N4 N 0 1 N N N N N N 5.617 -2.631 4.954 -3.841 -1.272 0.139 N19 7WN 18
7WN O01 O1 O 0 1 N N N N N N 6.721 -1.386 6.573 -4.661 0.547 -0.854 O01 7WN 19
7WN CL04 CL1 CL 0 0 N N N N N N 7.740 0.731 4.671 -2.388 2.370 -0.527 CL04 7WN 20
7WN H1 H1 H 0 1 N N N N N N 4.691 2.842 -3.451 5.714 -0.604 1.170 H1 7WN 21
7WN H3 H3 H 0 1 N N N N N N 3.766 1.201 -4.861 5.557 0.578 -1.527 H3 7WN 22
7WN H4 H4 H 0 1 N N N N N N 2.932 0.506 -3.429 6.665 -0.750 -1.092 H4 7WN 23
7WN H5 H5 H 0 1 N N N N N N 4.813 -0.863 -3.773 4.460 -1.502 -2.114 H5 7WN 24
7WN H6 H6 H 0 1 N N N N N N 5.887 0.541 -4.092 4.817 -2.201 -0.518 H6 7WN 25
7WN H7 H7 H 0 1 N N N N N N 6.731 -1.564 -2.306 2.106 -2.143 -1.579 H7 7WN 26
7WN H8 H8 H 0 1 N N N N N N 7.410 -1.658 0.053 -0.036 -1.278 -0.741 H8 7WN 27
7WN H9 H9 H 0 1 N N N N N N 5.196 -2.241 1.695 -0.870 -1.759 1.575 H9 7WN 28
7WN H10 H10 H 0 1 N N N N N N 5.072 1.785 0.869 2.062 1.697 1.497 H10 7WN 29
7WN H11 H11 H 0 1 N N N N N N 4.397 3.166 -1.211 4.488 1.268 1.849 H11 7WN 30
7WN H12 H12 H 0 1 N N N N N N 3.030 2.001 -1.196 4.669 1.976 0.229 H12 7WN 31
7WN H13 H13 H 0 1 N N N N N N 4.592 -4.361 5.564 -4.980 -3.027 0.272 H13 7WN 32
7WN H14 H14 H 0 1 N N N N N N 6.095 -3.996 6.477 -5.912 -1.514 0.357 H14 7WN 33
7WN H15 H15 H 0 1 N N N N N N 4.614 -3.019 6.758 -5.247 -2.063 -1.200 H15 7WN 34
7WN H16 H16 H 0 1 N N N N N N 7.358 0.741 2.245 -0.355 1.581 1.439 H16 7WN 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7WN C12 C13 SING N N 1
7WN C12 N11 SING N N 2
7WN C13 C14 SING N N 3
7WN N11 C10 SING N N 4
7WN C14 C15 DOUB Y N 5
7WN C14 C09 SING Y N 6
7WN C10 C09 SING N N 7
7WN C15 C16 SING Y N 8
7WN C09 C08 DOUB Y N 9
7WN C16 C07 DOUB Y N 10
7WN C08 C07 SING Y N 11
7WN C07 N06 SING N N 12
7WN N06 C05 SING N N 13
7WN C17 C05 SING N N 14
7WN C17 N18 DOUB N N 15
7WN C05 C03 DOUB N N 16
7WN N18 N19 SING N N 17
7WN C03 CL04 SING N N 18
7WN C03 C02 SING N N 19
7WN N19 C02 SING N N 20
7WN N19 C20 SING N N 21
7WN C02 O01 DOUB N N 22
7WN N11 H1 SING N N 23
7WN C12 H3 SING N N 24
7WN C12 H4 SING N N 25
7WN C13 H5 SING N N 26
7WN C13 H6 SING N N 27
7WN C15 H7 SING N N 28
7WN C16 H8 SING N N 29
7WN C17 H9 SING N N 30
7WN C08 H10 SING N N 31
7WN C10 H11 SING N N 32
7WN C10 H12 SING N N 33
7WN C20 H13 SING N N 34
7WN C20 H14 SING N N 35
7WN C20 H15 SING N N 36
7WN N06 H16 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7WN SMILES ACDLabs 12.01 CN1N=CC(Nc2cc3CNCCc3cc2)=C(Cl)C1=O
7WN InChI InChI 1.03 InChI=1S/C14H15ClN4O/c1-19-14(20)13(15)12(8-17-19)18-11-3-2-9-4-5-16-7-10(9)6-11/h2-3,6,8,16,18H,4-5,7H2,1H3
7WN InChIKey InChI 1.03 VZQFJJGIJFKMFN-UHFFFAOYSA-N
7WN SMILES_CANONICAL CACTVS 3.385 CN1N=CC(=C(Cl)C1=O)Nc2ccc3CCNCc3c2
7WN SMILES CACTVS 3.385 CN1N=CC(=C(Cl)C1=O)Nc2ccc3CCNCc3c2
7WN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN1C(=O)C(=C(C=N1)Nc2ccc3c(c2)CNCC3)Cl
7WN SMILES "OpenEye OEToolkits" 2.0.7 CN1C(=O)C(=C(C=N1)Nc2ccc3c(c2)CNCC3)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
7WN "SYSTEMATIC NAME" ACDLabs 12.01 4-chloro-2-methyl-5-[(1,2,3,4-tetrahydroisoquinolin-7-yl)amino]pyridazin-3(2H)-one
7WN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-chloranyl-2-methyl-5-(1,2,3,4-tetrahydroisoquinolin-7-ylamino)pyridazin-3-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7WN 'Create component' 2021-08-23 RCSB
7WN 'Initial release' 2022-08-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7WN N11 N 14.793 -1.066 1
7WN C12 C 14.793 0.496 2
7WN C13 C 13.434 1.267 3
7WN C14 C 12.093 0.465 4
7WN C15 C 10.794 1.215 5
7WN C16 C 9.495 0.465 6
7WN C17 C 5.598 -1.785 7
7WN C02 C 5.598 1.215 8
7WN C03 C 6.897 0.465 9
7WN C05 C 6.897 -1.035 10
7WN C07 C 9.495 -1.035 11
7WN C08 C 10.794 -1.785 12
7WN C09 C 12.093 -1.035 13
7WN C10 C 13.434 -1.837 14
7WN C20 C 3.000 1.215 15
7WN N06 N 8.196 -1.785 16
7WN N18 N 4.299 -1.035 17
7WN N19 N 4.299 0.465 18
7WN O01 O 5.598 2.715 19
7WN CL04 Cl 8.196 1.215 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7WN C12 C13 SINGLE NONE 1
7WN C12 N11 SINGLE NONE 2
7WN C13 C14 SINGLE NONE 3
7WN N11 C10 SINGLE NONE 4
7WN C14 C15 SINGLE NONE 5
7WN C14 C09 DOUBLE NONE 6
7WN C10 C09 SINGLE NONE 7
7WN C15 C16 DOUBLE NONE 8
7WN C09 C08 SINGLE NONE 9
7WN C16 C07 SINGLE NONE 10
7WN C08 C07 DOUBLE NONE 11
7WN C07 N06 SINGLE NONE 12
7WN N06 C05 SINGLE NONE 13
7WN C17 C05 SINGLE NONE 14
7WN C17 N18 DOUBLE NONE 15
7WN C05 C03 DOUBLE NONE 16
7WN N18 N19 SINGLE NONE 17
7WN C03 CL04 SINGLE NONE 18
7WN C03 C02 SINGLE NONE 19
7WN N19 C02 SINGLE NONE 20
7WN N19 C20 SINGLE NONE 21
7WN C02 O01 DOUBLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7WN MurckoScaffold S1 scaffold 'O=c1cc(Nc2ccc3c(c2)CNCC3)cn[nH]1' InChI=1S/C13H14N4O/c18-13-6-12(8-15-17-13)16-11-2-1-9-3-4-14-7-10(9)5-11/h1-2,5-6,8,14H,3-4,7H2,(H2,16,17,18) YEQICLWJKAIVSH-UHFFFAOYSA-N
7WN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
7WN pyridazine F2 fragment c1ccnnc1 InChI=1S/C4H4N2/c1-2-4-6-5-3-1/h1-4H PBMFSQRYOILNGV-UHFFFAOYSA-N
7WN Z1270443752 F3 fragment 'CNc1cn[nH]c(=O)c1.Cl' 'InChI=1S/C5H7N3O.ClH/c1-6-4-2-5(9)8-7-3-4;/h2-3H,1H3,(H2,6,8,9);1H' CQYGJBICWUHTRC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7WN N11 S1 1
7WN C12 S1 1
7WN C13 S1 1
7WN C14 S1 1
7WN C15 S1 1
7WN C16 S1 1
7WN C17 S1 1
7WN C02 S1 1
7WN C03 S1 1
7WN C05 S1 1
7WN C07 S1 1
7WN C08 S1 1
7WN C09 S1 1
7WN C10 S1 1
7WN N06 S1 1
7WN N18 S1 1
7WN N19 S1 1
7WN O01 S1 1
7WN C14 F1 1
7WN C15 F1 1
7WN C16 F1 1
7WN C07 F1 1
7WN C08 F1 1
7WN C09 F1 1
7WN C03 F2 1
7WN C02 F2 1
7WN N19 F2 1
7WN N18 F2 1
7WN C17 F2 1
7WN C05 F2 1
7WN CL04 F3 1
7WN C07 F3 1
7WN N06 F3 1
7WN C05 F3 1
7WN C17 F3 1
7WN N18 F3 1
7WN N19 F3 1
7WN C02 F3 1
7WN O01 F3 1
7WN C03 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7WN
_pdbe_chem_comp_rdkit_properties.exactmw 290.093
_pdbe_chem_comp_rdkit_properties.amw 290.754
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 142.315
_pdbe_chem_comp_rdkit_properties.tpsa 58.950
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.852
_pdbe_chem_comp_rdkit_properties.CrippenMR 77.551
_pdbe_chem_comp_rdkit_properties.chi0v 10.331
_pdbe_chem_comp_rdkit_properties.chi1v 5.536
_pdbe_chem_comp_rdkit_properties.chi2v 2.612
_pdbe_chem_comp_rdkit_properties.chi3v 2.612
_pdbe_chem_comp_rdkit_properties.chi4v 1.534
_pdbe_chem_comp_rdkit_properties.chi0n 24.575
_pdbe_chem_comp_rdkit_properties.chi1n 12.553
_pdbe_chem_comp_rdkit_properties.chi2n 2.271
_pdbe_chem_comp_rdkit_properties.chi3n 2.271
_pdbe_chem_comp_rdkit_properties.chi4n 1.370
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.850
_pdbe_chem_comp_rdkit_properties.kappa1 4.321
_pdbe_chem_comp_rdkit_properties.kappa2 5.264
_pdbe_chem_comp_rdkit_properties.kappa3 2.418
_pdbe_chem_comp_rdkit_properties.Phi 1.137
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7WN UniChem ChEMBL CHEMBL4848082
7WN UniChem PDBe 7WN
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7WN N11 -4.957 0.046 -1.361 ETKDGv3 1
7WN C12 -5.089 0.865 -0.152 ETKDGv3 2
7WN C13 -3.801 1.653 0.113 ETKDGv3 3
7WN C14 -2.572 0.792 -0.033 ETKDGv3 4
7WN C15 -1.279 1.303 0.475 ETKDGv3 5
7WN C16 -0.159 0.591 0.318 ETKDGv3 6
7WN C17 3.149 -1.663 0.734 ETKDGv3 7
7WN C02 4.197 0.461 -0.762 ETKDGv3 8
7WN C03 2.830 -0.006 -1.042 ETKDGv3 9
7WN C05 2.320 -1.010 -0.304 ETKDGv3 10
7WN C07 -0.194 -0.721 -0.379 ETKDGv3 11
7WN C08 -1.367 -1.184 -0.840 ETKDGv3 12
7WN C09 -2.610 -0.389 -0.689 ETKDGv3 13
7WN C10 -3.915 -0.974 -1.180 ETKDGv3 14
7WN C20 6.307 0.223 0.598 ETKDGv3 15
7WN N06 0.997 -1.513 -0.540 ETKDGv3 16
7WN N18 4.358 -1.256 0.985 ETKDGv3 17
7WN N19 4.941 -0.184 0.283 ETKDGv3 18
7WN O01 4.703 1.404 -1.428 ETKDGv3 19
7WN CL04 1.930 0.717 -2.374 ETKDGv3 20
7WN H1 -4.691 0.663 -2.165 ETKDGv3 21
7WN H3 -5.934 1.574 -0.279 ETKDGv3 22
7WN H4 -5.324 0.217 0.723 ETKDGv3 23
7WN H5 -3.841 2.082 1.137 ETKDGv3 24
7WN H6 -3.731 2.493 -0.612 ETKDGv3 25
7WN H7 -1.238 2.258 0.984 ETKDGv3 26
7WN H8 0.771 0.978 0.714 ETKDGv3 27
7WN H9 2.741 -2.489 1.301 ETKDGv3 28
7WN H10 -1.411 -2.144 -1.339 ETKDGv3 29
7WN H11 -4.266 -1.737 -0.452 ETKDGv3 30
7WN H12 -3.747 -1.492 -2.150 ETKDGv3 31
7WN H13 6.684 -0.337 1.480 ETKDGv3 32
7WN H14 6.334 1.308 0.829 ETKDGv3 33
7WN H15 6.969 0.013 -0.269 ETKDGv3 34
7WN H16 0.896 -2.542 -0.697 ETKDGv3 35
#