data_7ZH
#
_chem_comp.id 7ZH
_chem_comp.name
"methyl 6-[4-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H34 N10 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-09-17
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 622.632
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 7ZH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PPY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7ZH C1 C1 C 0 1 Y N N N N N 32.632 25.298 185.534 -11.937 1.111 -0.307 C1 7ZH 1
7ZH C10 C2 C 0 1 Y N N N N N 31.580 26.530 182.176 -8.726 -0.131 -1.673 C10 7ZH 2
7ZH C11 C3 C 0 1 N N N N N N 33.746 24.545 186.170 -13.207 1.695 -0.781 C11 7ZH 3
7ZH C12 C4 C 0 1 N N N N N N 27.548 27.996 180.814 -5.008 -1.124 -0.019 C12 7ZH 4
7ZH C13 C5 C 0 1 N N N N N N 25.634 28.787 179.454 -2.583 -1.253 -0.212 C13 7ZH 5
7ZH C14 C6 C 0 1 N N N N N N 25.564 29.969 178.507 -1.413 -1.893 0.539 C14 7ZH 6
7ZH C15 C7 C 0 1 N N N N N N 24.332 30.845 178.660 -0.102 -1.548 -0.171 C15 7ZH 7
7ZH C16 C8 C 0 1 N N N N N N 24.496 31.909 179.717 1.068 -2.188 0.579 C16 7ZH 8
7ZH C17 C9 C 0 1 N N N N N N 25.059 34.263 180.000 3.517 -2.326 0.396 C17 7ZH 9
7ZH C18 C10 C 0 1 N N N N N N 36.097 24.371 186.282 -15.392 2.591 -0.434 C18 7ZH 10
7ZH C19 C11 C 0 1 N N N N N N 25.641 36.652 180.323 5.967 -2.516 0.286 C19 7ZH 11
7ZH C2 C12 C 0 1 Y N N N N N 31.571 25.749 186.319 -11.739 0.896 1.069 C2 7ZH 12
7ZH C20 C13 C 0 1 N N R N N N 26.327 37.828 179.655 7.114 -2.031 -0.603 C20 7ZH 13
7ZH C21 C14 C 0 1 N N S N N N 27.850 37.759 179.528 8.445 -2.638 -0.119 C21 7ZH 14
7ZH C22 C15 C 0 1 N N R N N N 28.328 38.425 180.819 9.328 -1.407 0.202 C22 7ZH 15
7ZH C23 C16 C 0 1 N N R N N N 27.260 39.501 181.000 8.640 -0.290 -0.624 C23 7ZH 16
7ZH C24 C17 C 0 1 Y N N N N N 26.923 39.190 183.494 8.139 1.710 0.831 C24 7ZH 17
7ZH C25 C18 C 0 1 Y N N N N N 26.805 41.196 184.174 9.875 2.962 0.476 C25 7ZH 18
7ZH C26 C19 C 0 1 Y N N N N N 26.702 42.419 184.864 10.881 3.941 0.414 C26 7ZH 19
7ZH C27 C20 C 0 1 Y N N N N N 26.983 43.470 182.821 12.043 2.604 -1.066 C27 7ZH 20
7ZH C28 C21 C 0 1 Y N N N N N 26.998 41.264 182.804 10.034 1.797 -0.295 C28 7ZH 21
7ZH C3 C22 C 0 1 Y N N N N N 30.534 26.447 185.752 -10.576 0.357 1.529 C3 7ZH 22
7ZH C4 C23 C 0 1 Y N N N N N 30.512 26.725 184.362 -9.553 0.009 0.620 C4 7ZH 23
7ZH C5 C24 C 0 1 Y N N N N N 31.594 26.259 183.563 -9.745 0.223 -0.769 C5 7ZH 24
7ZH C6 C25 C 0 1 Y N N N N N 32.643 25.547 184.183 -10.952 0.773 -1.222 C6 7ZH 25
7ZH C7 C26 C 0 1 Y N N N N N 29.461 27.441 183.734 -8.346 -0.546 1.071 C7 7ZH 26
7ZH C8 C27 C 0 1 Y N N N N N 29.477 27.672 182.377 -7.366 -0.874 0.159 C8 7ZH 27
7ZH C9 C28 C 0 1 Y N N N N N 30.551 27.222 181.611 -7.563 -0.660 -1.210 C9 7ZH 28
7ZH N1 N1 N 0 1 N N N N N N 28.439 28.411 181.767 -6.163 -1.427 0.607 N1 7ZH 29
7ZH N10 N2 N 0 1 Y N N N N N 27.093 42.374 182.065 11.123 1.662 -1.043 N10 7ZH 30
7ZH N2 N3 N 0 1 N N N N N N 26.687 28.968 180.441 -3.838 -1.583 0.468 N2 7ZH 31
7ZH N3 N4 N 0 1 N N N N N N 24.979 33.181 179.196 2.323 -1.858 -0.101 N3 7ZH 32
7ZH N4 N5 N 0 1 N N N N N N 25.512 35.452 179.502 4.695 -2.017 -0.243 N4 7ZH 33
7ZH N5 N6 N 0 1 N N N N N N 24.725 34.223 181.254 3.532 -3.063 1.470 N5 7ZH 34
7ZH N6 N7 N 0 1 Y N N N N N 27.074 39.962 182.372 8.926 1.026 -0.048 N6 7ZH 35
7ZH N7 N8 N 0 1 Y N N N N N 26.761 39.876 184.598 8.696 2.846 1.135 N7 7ZH 36
7ZH N8 N9 N 0 1 N N N N N N 26.522 42.513 186.186 10.776 5.111 1.145 N8 7ZH 37
7ZH N9 N10 N 0 1 Y N N N N N 26.798 43.559 184.142 11.936 3.716 -0.362 N9 7ZH 38
7ZH O1 O1 O 0 1 N N N N N N 29.476 26.908 186.469 -10.400 0.156 2.861 O1 7ZH 39
7ZH O2 O2 O 0 1 N N N N N N 27.519 26.856 180.347 -5.022 -0.437 -1.021 O2 7ZH 40
7ZH O3 O3 O 0 1 N N N N N N 34.907 24.731 185.538 -14.170 2.021 0.103 O3 7ZH 41
7ZH O4 O4 O 0 1 N N N N N N 33.622 23.845 187.141 -13.383 1.883 -1.968 O4 7ZH 42
7ZH O5 O5 O 0 1 N N N N N N 28.297 38.480 178.381 9.040 -3.426 -1.151 O5 7ZH 43
7ZH O6 O6 O 0 1 N N N N N N 29.608 39.028 180.650 10.671 -1.615 -0.240 O6 7ZH 44
7ZH O7 O7 O 0 1 N N N N N N 26.050 38.924 180.559 7.235 -0.602 -0.508 O7 7ZH 45
7ZH H5 H1 H 0 1 N N N N N N 32.394 26.185 181.557 -8.867 0.021 -2.733 H5 7ZH 46
7ZH H9 H2 H 0 1 N N N N N N 24.669 28.685 179.973 -2.454 -0.171 -0.232 H9 7ZH 47
7ZH H10 H3 H 0 1 N N N N N N 25.838 27.874 178.875 -2.611 -1.634 -1.233 H10 7ZH 48
7ZH H11 H4 H 0 1 N N N N N N 25.581 29.582 177.477 -1.384 -1.512 1.559 H11 7ZH 49
7ZH H12 H5 H 0 1 N N N N N N 26.451 30.596 178.678 -1.542 -2.975 0.558 H12 7ZH 50
7ZH H13 H6 H 0 1 N N N N N N 24.128 31.336 177.697 -0.131 -1.930 -1.192 H13 7ZH 51
7ZH H14 H7 H 0 1 N N N N N N 23.479 30.207 178.934 0.027 -0.466 -0.191 H14 7ZH 52
7ZH H16 H8 H 0 1 N N N N N N 23.520 32.077 180.195 1.096 -1.807 1.600 H16 7ZH 53
7ZH H15 H9 H 0 1 N N N N N N 25.214 31.546 180.467 0.938 -3.270 0.599 H15 7ZH 54
7ZH H22 H10 H 0 1 N N N N N N 36.988 24.565 185.666 -15.160 3.514 -0.966 H22 7ZH 55
7ZH H21 H11 H 0 1 N N N N N N 36.149 24.971 187.202 -15.853 1.882 -1.122 H21 7ZH 56
7ZH H20 H12 H 0 1 N N N N N N 36.057 23.303 186.542 -16.082 2.807 0.382 H20 7ZH 57
7ZH H24 H13 H 0 1 N N N N N N 24.631 36.972 180.618 5.953 -3.606 0.299 H24 7ZH 58
7ZH H23 H14 H 0 1 N N N N N N 26.219 36.388 181.221 6.110 -2.142 1.300 H23 7ZH 59
7ZH H1 H15 H 0 1 N N N N N N 31.565 25.548 187.380 -12.518 1.161 1.768 H1 7ZH 60
7ZH H25 H16 H 0 1 N N N N N N 25.880 38.011 178.667 6.927 -2.319 -1.638 H25 7ZH 61
7ZH H26 H17 H 0 1 N N N N N N 28.179 36.710 179.500 8.287 -3.238 0.777 H26 7ZH 62
7ZH H28 H18 H 0 1 N N N N N N 28.309 37.711 181.656 9.302 -1.176 1.266 H28 7ZH 63
7ZH H30 H19 H 0 1 N N N N N N 27.521 40.358 180.362 8.960 -0.330 -1.665 H30 7ZH 64
7ZH H31 H20 H 0 1 N N N N N N 26.936 38.110 183.470 7.192 1.362 1.214 H31 7ZH 65
7ZH H34 H21 H 0 1 N N N N N N 27.053 44.410 182.294 12.918 2.461 -1.683 H34 7ZH 66
7ZH H2 H22 H 0 1 N N N N N N 33.469 25.192 183.585 -11.114 0.932 -2.278 H2 7ZH 67
7ZH H3 H23 H 0 1 N N N N N N 28.638 27.810 184.328 -8.186 -0.714 2.126 H3 7ZH 68
7ZH H4 H24 H 0 1 N N N N N N 30.568 27.425 180.550 -6.785 -0.929 -1.909 H4 7ZH 69
7ZH H7 H25 H 0 1 N N N N N N 28.343 29.359 182.070 -6.159 -2.029 1.367 H7 7ZH 70
7ZH H8 H26 H 0 1 N N N N N N 26.779 29.867 180.870 -3.827 -2.131 1.268 H8 7ZH 71
7ZH H17 H27 H 0 1 N N N N N N 25.253 33.253 178.237 2.312 -1.310 -0.900 H17 7ZH 72
7ZH H18 H28 H 0 1 N N N N N N 25.765 35.502 178.536 4.683 -1.469 -1.043 H18 7ZH 73
7ZH H19 H29 H 0 1 N N N N N N 24.851 35.107 181.704 4.374 -3.394 1.820 H19 7ZH 74
7ZH H33 H30 H 0 1 N N N N N N 26.484 43.477 186.450 10.001 5.263 1.708 H33 7ZH 75
7ZH H32 H31 H 0 1 N N N N N N 25.665 42.065 186.438 11.477 5.779 1.094 H32 7ZH 76
7ZH H6 H32 H 0 1 N N N N N N 29.585 26.672 187.383 -10.693 -0.712 3.170 H6 7ZH 77
7ZH H27 H33 H 0 1 N N N N N N 29.243 38.425 178.321 9.881 -3.832 -0.901 H27 7ZH 78
7ZH H29 H34 H 0 1 N N N N N N 29.878 39.433 181.466 11.114 -2.363 0.184 H29 7ZH 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7ZH O5 C21 SING N N 1
7ZH C14 C15 SING N N 2
7ZH C14 C13 SING N N 3
7ZH C15 C16 SING N N 4
7ZH N3 C16 SING N N 5
7ZH N3 C17 SING N N 6
7ZH C13 N2 SING N N 7
7ZH N4 C17 SING N N 8
7ZH N4 C19 SING N N 9
7ZH C21 C20 SING N N 10
7ZH C21 C22 SING N N 11
7ZH C20 C19 SING N N 12
7ZH C20 O7 SING N N 13
7ZH C17 N5 DOUB N N 14
7ZH O2 C12 DOUB N N 15
7ZH N2 C12 SING N N 16
7ZH O7 C23 SING N N 17
7ZH O6 C22 SING N N 18
7ZH C12 N1 SING N N 19
7ZH C22 C23 SING N N 20
7ZH C23 N6 SING N N 21
7ZH C9 C10 DOUB Y N 22
7ZH C9 C8 SING Y N 23
7ZH N1 C8 SING N N 24
7ZH N10 C28 DOUB Y N 25
7ZH N10 C27 SING Y N 26
7ZH C10 C5 SING Y N 27
7ZH N6 C28 SING Y N 28
7ZH N6 C24 SING Y N 29
7ZH C8 C7 DOUB Y N 30
7ZH C28 C25 SING Y N 31
7ZH C27 N9 DOUB Y N 32
7ZH C24 N7 DOUB Y N 33
7ZH C5 C6 DOUB Y N 34
7ZH C5 C4 SING Y N 35
7ZH C7 C4 SING Y N 36
7ZH N9 C26 SING Y N 37
7ZH C25 N7 SING Y N 38
7ZH C25 C26 DOUB Y N 39
7ZH C6 C1 SING Y N 40
7ZH C4 C3 DOUB Y N 41
7ZH C26 N8 SING N N 42
7ZH C1 C11 SING N N 43
7ZH C1 C2 DOUB Y N 44
7ZH O3 C11 SING N N 45
7ZH O3 C18 SING N N 46
7ZH C3 C2 SING Y N 47
7ZH C3 O1 SING N N 48
7ZH C11 O4 DOUB N N 49
7ZH C10 H5 SING N N 50
7ZH C13 H9 SING N N 51
7ZH C13 H10 SING N N 52
7ZH C14 H11 SING N N 53
7ZH C14 H12 SING N N 54
7ZH C15 H13 SING N N 55
7ZH C15 H14 SING N N 56
7ZH C16 H16 SING N N 57
7ZH C16 H15 SING N N 58
7ZH C18 H22 SING N N 59
7ZH C18 H21 SING N N 60
7ZH C18 H20 SING N N 61
7ZH C19 H24 SING N N 62
7ZH C19 H23 SING N N 63
7ZH C2 H1 SING N N 64
7ZH C20 H25 SING N N 65
7ZH C21 H26 SING N N 66
7ZH C22 H28 SING N N 67
7ZH C23 H30 SING N N 68
7ZH C24 H31 SING N N 69
7ZH C27 H34 SING N N 70
7ZH C6 H2 SING N N 71
7ZH C7 H3 SING N N 72
7ZH C9 H4 SING N N 73
7ZH N1 H7 SING N N 74
7ZH N2 H8 SING N N 75
7ZH N3 H17 SING N N 76
7ZH N4 H18 SING N N 77
7ZH N5 H19 SING N N 78
7ZH N8 H33 SING N N 79
7ZH N8 H32 SING N N 80
7ZH O1 H6 SING N N 81
7ZH O5 H27 SING N N 82
7ZH O6 H29 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7ZH InChI InChI 1.06 InChI=1S/C28H34N10O7/c1-44-26(42)15-8-14-4-5-16(10-17(14)18(39)9-15)37-28(43)32-7-3-2-6-31-27(30)33-11-19-21(40)22(41)25(45-19)38-13-36-20-23(29)34-12-35-24(20)38/h4-5,8-10,12-13,19,21-22,25,39-41H,2-3,6-7,11H2,1H3,(H2,29,34,35)(H3,30,31,33)(H2,32,37,43)/t19-,21-,22-,25-/m1/s1
7ZH InChIKey InChI 1.06 AUWUXQSTBMRGEC-PTGPVQHPSA-N
7ZH SMILES_CANONICAL CACTVS 3.385 COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1
7ZH SMILES CACTVS 3.385 COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1
7ZH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)\NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"
7ZH SMILES "OpenEye OEToolkits" 2.0.7 COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O
#
_pdbx_chem_comp_identifier.comp_id 7ZH
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"methyl 6-[4-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7ZH 'Create component' 2021-09-17 PDBE
7ZH 'Initial release' 2022-04-06 RCSB
7ZH 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
7ZH C1 C 6.897 0.983 1
7ZH C10 C 10.836 1.785 2
7ZH C11 C 5.598 1.733 3
7ZH C12 C 14.793 -0.558 4
7ZH C13 C 17.391 -0.568 5
7ZH C14 C 18.687 -1.323 6
7ZH C15 C 19.989 -0.578 7
7ZH C16 C 21.285 -1.333 8
7ZH C17 C 23.884 -1.343 9
7ZH C18 C 3.000 1.733 10
7ZH C19 C 26.482 -1.353 11
7ZH C2 C 6.897 -0.517 12
7ZH C20 C 27.784 -0.608 13
7ZH C21 C 27.946 0.883 14
7ZH C22 C 29.415 1.189 15
7ZH C23 C 30.159 -0.113 16
7ZH C24 C 32.390 -1.570 17
7ZH C25 C 34.019 0.212 18
7ZH C26 C 35.237 1.087 19
7ZH C27 C 33.722 3.197 20
7ZH C28 C 32.652 0.830 21
7ZH C3 C 8.196 -1.267 22
7ZH C4 C 9.495 -0.517 23
7ZH C5 C 9.495 0.983 24
7ZH C6 C 8.196 1.733 25
7ZH C7 C 10.836 -1.319 26
7ZH C8 C 12.195 -0.548 27
7ZH C9 C 12.195 1.014 28
7ZH N1 N 13.491 -1.303 29
7ZH N10 N 32.503 2.322 30
7ZH N2 N 16.089 -1.313 31
7ZH N3 N 22.587 -0.588 32
7ZH N4 N 25.185 -0.598 33
7ZH N5 N 23.878 -2.843 34
7ZH N6 N 31.651 -0.275 35
7ZH N7 N 33.851 -1.270 36
7ZH N8 N 36.604 0.469 37
7ZH N9 N 35.089 2.579 38
7ZH O1 O 8.196 -2.767 39
7ZH O2 O 14.799 0.942 40
7ZH O3 O 4.299 0.983 41
7ZH O4 O 5.598 3.233 42
7ZH O5 O 26.835 1.891 43
7ZH O6 O 30.030 2.557 44
7ZH O7 O 29.151 -1.224 45
7ZH H19 H 22.576 -3.588 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
7ZH C21 O5 SINGLE BEGINWEDGE 1
7ZH C14 C15 SINGLE NONE 2
7ZH C14 C13 SINGLE NONE 3
7ZH C15 C16 SINGLE NONE 4
7ZH N3 C16 SINGLE NONE 5
7ZH N3 C17 SINGLE ENDUPRIGHT 6
7ZH C13 N2 SINGLE NONE 7
7ZH N4 C17 SINGLE ENDDOWNRIGHT 8
7ZH N4 C19 SINGLE NONE 9
7ZH C21 C20 SINGLE NONE 10
7ZH C21 C22 SINGLE NONE 11
7ZH C20 C19 SINGLE BEGINDASH 12
7ZH C20 O7 SINGLE NONE 13
7ZH C17 N5 DOUBLE NONE 14
7ZH O2 C12 DOUBLE NONE 15
7ZH N2 C12 SINGLE NONE 16
7ZH O7 C23 SINGLE NONE 17
7ZH C22 O6 SINGLE BEGINWEDGE 18
7ZH C12 N1 SINGLE NONE 19
7ZH C22 C23 SINGLE NONE 20
7ZH C23 N6 SINGLE BEGINDASH 21
7ZH C9 C10 SINGLE NONE 22
7ZH C9 C8 DOUBLE NONE 23
7ZH N1 C8 SINGLE NONE 24
7ZH N10 C28 DOUBLE NONE 25
7ZH N10 C27 SINGLE NONE 26
7ZH C10 C5 DOUBLE NONE 27
7ZH N6 C28 SINGLE NONE 28
7ZH N6 C24 SINGLE NONE 29
7ZH C8 C7 SINGLE NONE 30
7ZH C28 C25 SINGLE NONE 31
7ZH C27 N9 DOUBLE NONE 32
7ZH C24 N7 DOUBLE NONE 33
7ZH C5 C6 SINGLE NONE 34
7ZH C5 C4 SINGLE NONE 35
7ZH C7 C4 DOUBLE NONE 36
7ZH N9 C26 SINGLE NONE 37
7ZH C25 N7 SINGLE NONE 38
7ZH C25 C26 DOUBLE NONE 39
7ZH C6 C1 DOUBLE NONE 40
7ZH C4 C3 SINGLE NONE 41
7ZH C26 N8 SINGLE NONE 42
7ZH C1 C11 SINGLE NONE 43
7ZH C1 C2 SINGLE NONE 44
7ZH O3 C11 SINGLE NONE 45
7ZH O3 C18 SINGLE NONE 46
7ZH C3 C2 DOUBLE NONE 47
7ZH C3 O1 SINGLE NONE 48
7ZH C11 O4 DOUBLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
7ZH MurckoScaffold S1 scaffold 'N=C(NCCCCNC(=O)Nc1ccc2ccccc2c1)NC[C@@H]1CC[C@H](n2cnc3cncnc32)O1' InChI=1S/C26H31N9O2/c27-25(31-14-21-9-10-23(37-21)35-17-33-22-15-28-16-32-24(22)35)29-11-3-4-12-30-26(36)34-20-8-7-18-5-1-2-6-19(18)13-20/h1-2,5-8,13,15-17,21,23H,3-4,9-12,14H2,(H3,27,29,31)(H2,30,34,36)/t21-,23+/m0/s1 SBOXNBKOKMWISV-JTHBVZDNSA-N
7ZH adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
7ZH imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
7ZH napthalene F3 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
7ZH phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
7ZH purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
7ZH pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
7ZH C1 S1 1
7ZH C10 S1 1
7ZH C12 S1 1
7ZH C13 S1 1
7ZH C14 S1 1
7ZH C15 S1 1
7ZH C16 S1 1
7ZH C17 S1 1
7ZH C19 S1 1
7ZH C2 S1 1
7ZH C20 S1 1
7ZH C21 S1 1
7ZH C22 S1 1
7ZH C23 S1 1
7ZH C24 S1 1
7ZH C25 S1 1
7ZH C26 S1 1
7ZH C27 S1 1
7ZH C28 S1 1
7ZH C3 S1 1
7ZH C4 S1 1
7ZH C5 S1 1
7ZH C6 S1 1
7ZH C7 S1 1
7ZH C8 S1 1
7ZH C9 S1 1
7ZH N1 S1 1
7ZH N10 S1 1
7ZH N2 S1 1
7ZH N3 S1 1
7ZH N4 S1 1
7ZH N5 S1 1
7ZH N6 S1 1
7ZH N7 S1 1
7ZH N9 S1 1
7ZH O2 S1 1
7ZH O7 S1 1
7ZH N9 F1 1
7ZH C26 F1 1
7ZH C25 F1 1
7ZH C28 F1 1
7ZH N10 F1 1
7ZH C27 F1 1
7ZH N6 F1 1
7ZH C24 F1 1
7ZH N7 F1 1
7ZH N8 F1 1
7ZH C25 F2 1
7ZH C28 F2 1
7ZH N6 F2 1
7ZH C24 F2 1
7ZH N7 F2 1
7ZH C1 F3 1
7ZH C2 F3 1
7ZH C3 F3 1
7ZH C4 F3 1
7ZH C5 F3 1
7ZH C6 F3 1
7ZH C10 F3 1
7ZH C9 F3 1
7ZH C8 F3 1
7ZH C7 F3 1
7ZH C1 F4 1
7ZH C6 F4 1
7ZH C5 F4 1
7ZH C4 F4 1
7ZH C3 F4 1
7ZH C2 F4 1
7ZH C10 F4 2
7ZH C9 F4 2
7ZH C8 F4 2
7ZH C7 F4 2
7ZH C4 F4 2
7ZH C5 F4 2
7ZH N7 F5 1
7ZH C24 F5 1
7ZH N6 F5 1
7ZH C28 F5 1
7ZH C25 F5 1
7ZH C26 F5 1
7ZH N9 F5 1
7ZH C27 F5 1
7ZH N10 F5 1
7ZH C25 F6 1
7ZH C28 F6 1
7ZH N10 F6 1
7ZH C27 F6 1
7ZH N9 F6 1
7ZH C26 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 7ZH
_pdbe_chem_comp_rdkit_properties.exactmw 622.261
_pdbe_chem_comp_rdkit_properties.amw 622.643
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 304.261
_pdbe_chem_comp_rdkit_properties.tpsa 254.880
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.746
_pdbe_chem_comp_rdkit_properties.CrippenMR 155.663
_pdbe_chem_comp_rdkit_properties.chi0v 21.330
_pdbe_chem_comp_rdkit_properties.chi1v 11.336
_pdbe_chem_comp_rdkit_properties.chi2v 4.976
_pdbe_chem_comp_rdkit_properties.chi3v 4.976
_pdbe_chem_comp_rdkit_properties.chi4v 3.139
_pdbe_chem_comp_rdkit_properties.chi0n 55.330
_pdbe_chem_comp_rdkit_properties.chi1n 27.691
_pdbe_chem_comp_rdkit_properties.chi2n 4.976
_pdbe_chem_comp_rdkit_properties.chi3n 4.976
_pdbe_chem_comp_rdkit_properties.chi4n 3.139
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.260
_pdbe_chem_comp_rdkit_properties.kappa1 9.869
_pdbe_chem_comp_rdkit_properties.kappa2 13.581
_pdbe_chem_comp_rdkit_properties.kappa3 6.950
_pdbe_chem_comp_rdkit_properties.Phi 2.978
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
7ZH UniChem ChEMBL CHEMBL5170047
7ZH UniChem PDBe 7ZH
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
7ZH C1 11.517 0.229 0.792 ETKDGv3 1
7ZH C10 8.958 2.818 0.352 ETKDGv3 2
7ZH C11 12.973 0.081 1.024 ETKDGv3 3
7ZH C12 4.316 1.134 0.275 ETKDGv3 4
7ZH C13 1.909 0.366 0.295 ETKDGv3 5
7ZH C14 0.578 0.619 -0.425 ETKDGv3 6
7ZH C15 0.605 0.107 -1.874 ETKDGv3 7
7ZH C16 -0.696 0.424 -2.620 ETKDGv3 8
7ZH C17 -2.798 0.242 -1.176 ETKDGv3 9
7ZH C18 14.923 -1.413 1.336 ETKDGv3 10
7ZH C19 -4.867 -0.128 0.279 ETKDGv3 11
7ZH C2 10.676 -0.992 0.663 ETKDGv3 12
7ZH C20 -5.838 -1.252 0.678 ETKDGv3 13
7ZH C21 -6.689 -1.737 -0.492 ETKDGv3 14
7ZH C22 -7.952 -2.197 0.191 ETKDGv3 15
7ZH C23 -7.983 -1.337 1.458 ETKDGv3 16
7ZH C24 -8.831 0.929 0.515 ETKDGv3 17
7ZH C25 -10.973 0.697 0.769 ETKDGv3 18
7ZH C26 -12.296 0.742 0.621 ETKDGv3 19
7ZH C27 -12.481 -1.329 1.831 ETKDGv3 20
7ZH C28 -10.366 -0.386 1.451 ETKDGv3 21
7ZH C3 9.352 -0.941 0.457 ETKDGv3 22
7ZH C4 8.671 0.381 0.341 ETKDGv3 23
7ZH C5 9.511 1.601 0.467 ETKDGv3 24
7ZH C6 10.959 1.449 0.701 ETKDGv3 25
7ZH C7 7.349 0.516 0.114 ETKDGv3 26
7ZH C8 6.730 1.865 0.017 ETKDGv3 27
7ZH C9 7.510 2.953 0.108 ETKDGv3 28
7ZH N1 5.322 2.023 -0.233 ETKDGv3 29
7ZH N10 -11.039 -1.385 1.934 ETKDGv3 30
7ZH N2 2.972 1.234 -0.212 ETKDGv3 31
7ZH N3 -1.818 -0.329 -2.058 ETKDGv3 32
7ZH N4 -3.812 -0.611 -0.615 ETKDGv3 33
7ZH N5 -2.751 1.509 -0.892 ETKDGv3 34
7ZH N6 -8.963 -0.260 1.326 ETKDGv3 35
7ZH N7 -9.959 1.504 0.187 ETKDGv3 36
7ZH N8 -12.939 1.780 -0.119 ETKDGv3 37
7ZH N9 -13.067 -0.329 1.213 ETKDGv3 38
7ZH O1 8.663 -2.154 0.366 ETKDGv3 39
7ZH O2 4.599 0.294 1.172 ETKDGv3 40
7ZH O3 13.534 -1.198 1.116 ETKDGv3 41
7ZH O4 13.709 1.101 1.138 ETKDGv3 42
7ZH O5 -6.054 -2.779 -1.187 ETKDGv3 43
7ZH O6 -7.862 -3.558 0.532 ETKDGv3 44
7ZH O7 -6.704 -0.782 1.686 ETKDGv3 45
7ZH H5 9.563 3.712 0.434 ETKDGv3 46
7ZH H9 2.204 -0.700 0.174 ETKDGv3 47
7ZH H10 1.771 0.564 1.380 ETKDGv3 48
7ZH H11 -0.223 0.089 0.134 ETKDGv3 49
7ZH H12 0.347 1.707 -0.406 ETKDGv3 50
7ZH H13 1.444 0.583 -2.424 ETKDGv3 51
7ZH H14 0.773 -0.992 -1.881 ETKDGv3 52
7ZH H16 -0.574 0.132 -3.686 ETKDGv3 53
7ZH H15 -0.892 1.518 -2.605 ETKDGv3 54
7ZH H22 15.121 -2.504 1.371 ETKDGv3 55
7ZH H21 15.513 -0.966 0.509 ETKDGv3 56
7ZH H20 15.229 -0.961 2.304 ETKDGv3 57
7ZH H24 -4.397 0.279 1.201 ETKDGv3 58
7ZH H23 -5.430 0.693 -0.216 ETKDGv3 59
7ZH H1 11.147 -1.964 0.743 ETKDGv3 60
7ZH H25 -5.253 -2.102 1.099 ETKDGv3 61
7ZH H26 -6.924 -0.892 -1.182 ETKDGv3 62
7ZH H28 -8.833 -2.023 -0.471 ETKDGv3 63
7ZH H30 -8.257 -1.956 2.340 ETKDGv3 64
7ZH H31 -7.875 1.308 0.181 ETKDGv3 65
7ZH H34 -13.081 -2.122 2.257 ETKDGv3 66
7ZH H2 11.569 2.341 0.795 ETKDGv3 67
7ZH H3 6.716 -0.343 -0.033 ETKDGv3 68
7ZH H4 7.083 3.944 0.019 ETKDGv3 69
7ZH H7 5.002 2.873 -0.750 ETKDGv3 70
7ZH H8 2.760 1.955 -0.939 ETKDGv3 71
7ZH H17 -1.850 -1.357 -2.241 ETKDGv3 72
7ZH H18 -3.768 -1.628 -0.850 ETKDGv3 73
7ZH H19 -3.426 1.985 -0.255 ETKDGv3 74
7ZH H33 -13.977 1.777 -0.227 ETKDGv3 75
7ZH H32 -12.389 2.553 -0.556 ETKDGv3 76
7ZH H6 7.665 -2.229 0.238 ETKDGv3 77
7ZH H27 -6.583 -2.928 -2.014 ETKDGv3 78
7ZH H29 -8.778 -3.845 0.785 ETKDGv3 79
#