data_817
#
_chem_comp.id 817
_chem_comp.name 1-{[N-(1-IMINO-GUANIDINO-METHYL)]SULFANYLMETHYL}-3-TRIFLUOROMETHYL-BENZENE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H11 F3 N4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3-(TRIFLUOROMETHYL)BENZYL N-[(E)-AMINO(IMINO)METHYL]IMIDOTHIOCARBAMATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-08-29
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 276.281
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 817
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ANO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
817 N1 N1 N 0 1 N N N N N N 32.112 38.672 11.619 6.432 0.991 -0.919 N1 817 1
817 C2 C2 C 0 1 N N N N N N 30.065 40.474 11.725 3.149 -0.080 0.014 C2 817 2
817 N2 N2 N 0 1 N N N N N N 30.655 36.884 11.862 5.607 0.407 1.168 N2 817 3
817 N3 N3 N 0 1 N N N N N N 29.861 39.131 11.972 4.226 0.279 -0.772 N3 817 4
817 C4 C4 C 0 1 Y N N N N N 32.188 43.335 9.695 -0.835 -0.989 0.359 C4 817 5
817 C6 C6 C 0 1 Y N N N N N 33.601 43.504 7.769 -2.561 -2.478 -0.371 C6 817 6
817 C7 C7 C 0 1 Y N N N N N 34.280 44.553 8.360 -3.466 -1.433 -0.361 C7 817 7
817 C9 C9 C 0 1 N N N N N N 34.654 46.136 10.263 -4.043 0.972 0.020 C9 817 8
817 C10 C10 C 0 1 Y N N N N N 32.866 44.386 10.283 -1.741 0.055 0.374 C10 817 9
817 C1 C1 C 0 1 N N N N N N 30.901 38.239 11.813 5.441 0.567 -0.187 C1 817 10
817 N4 N4 N 0 1 N N N N N N 29.154 41.344 12.068 3.308 -0.256 1.295 N4 817 11
817 S1 S1 S 0 1 N N N N N N 31.551 41.014 10.946 1.560 -0.300 -0.715 S1 817 12
817 C3 C3 C 0 1 N N N N N N 31.049 42.669 10.422 0.600 -0.746 0.752 C3 817 13
817 C5 C5 C 0 1 Y N N N N N 32.556 42.893 8.436 -1.245 -2.256 -0.010 C5 817 14
817 C8 C8 C 0 1 Y N N N N N 33.914 44.993 9.618 -3.056 -0.167 0.010 C8 817 15
817 F1 F1 F 0 1 N N N N N N 36.023 46.003 10.013 -5.299 0.505 -0.380 F1 817 16
817 F2 F2 F 0 1 N N N N N N 34.197 47.348 9.727 -4.132 1.501 1.312 F2 817 17
817 F3 F3 F 0 1 N N N N N N 34.425 46.121 11.641 -3.613 1.969 -0.863 F3 817 18
817 HN1 HN1 H 0 1 N N N N N N 32.746 37.904 11.525 6.293 1.181 -1.860 HN1 817 19
817 HN21 1HN2 H 0 0 N N N N N N 31.351 36.173 11.758 6.454 0.091 1.519 HN21 817 20
817 HN22 2HN2 H 0 0 N N N N N N 29.682 36.712 12.017 4.877 0.612 1.774 HN22 817 21
817 HN3 HN3 H 0 1 N N N N N N 28.962 38.806 12.265 4.127 0.329 -1.736 HN3 817 22
817 H6 H6 H 0 1 N N N N N N 33.887 43.162 6.785 -2.882 -3.468 -0.660 H6 817 23
817 H7 H7 H 0 1 N N N N N N 35.097 45.029 7.838 -4.494 -1.607 -0.643 H7 817 24
817 H10 H10 H 0 1 N N N N N N 32.576 44.733 11.264 -1.420 1.044 0.664 H10 817 25
817 HN4 HN4 H 0 1 N N N N N N 29.508 42.239 11.797 2.552 -0.509 1.848 HN4 817 26
817 H31 1H3 H 0 1 N N N N N N 30.181 42.593 9.750 1.013 -1.652 1.196 H31 817 27
817 H32 2H3 H 0 1 N N N N N N 30.779 43.267 11.305 0.646 0.066 1.477 H32 817 28
817 H5 H5 H 0 1 N N N N N N 32.027 42.072 7.975 -0.538 -3.072 -0.018 H5 817 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
817 N1 C1 DOUB N N 1
817 N1 HN1 SING N N 2
817 C2 N3 SING N N 3
817 C2 N4 DOUB N N 4
817 C2 S1 SING N N 5
817 N2 C1 SING N N 6
817 N2 HN21 SING N N 7
817 N2 HN22 SING N N 8
817 N3 C1 SING N N 9
817 N3 HN3 SING N N 10
817 C4 C10 SING Y N 11
817 C4 C3 SING N N 12
817 C4 C5 DOUB Y N 13
817 C6 C7 DOUB Y N 14
817 C6 C5 SING Y N 15
817 C6 H6 SING N N 16
817 C7 C8 SING Y N 17
817 C7 H7 SING N N 18
817 C9 C8 SING N N 19
817 C9 F1 SING N N 20
817 C9 F2 SING N N 21
817 C9 F3 SING N N 22
817 C10 C8 DOUB Y N 23
817 C10 H10 SING N N 24
817 N4 HN4 SING N N 25
817 S1 C3 SING N N 26
817 C3 H31 SING N N 27
817 C3 H32 SING N N 28
817 C5 H5 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
817 SMILES ACDLabs 10.04 FC(F)(F)c1cccc(c1)CSC(=[N@H])NC(=[N@H])N
817 SMILES_CANONICAL CACTVS 3.341 NC(=N)NC(=N)SCc1cccc(c1)C(F)(F)F
817 SMILES CACTVS 3.341 NC(=N)NC(=N)SCc1cccc(c1)C(F)(F)F
817 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\N)/N/C(=N/[H])/SCc1cccc(c1)C(F)(F)F"
817 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(N)NC(=N[H])SCc1cccc(c1)C(F)(F)F"
817 InChI InChI 1.03 InChI=1S/C10H11F3N4S/c11-10(12,13)7-3-1-2-6(4-7)5-18-9(16)17-8(14)15/h1-4H,5H2,(H5,14,15,16,17)
817 InChIKey InChI 1.03 DWJNPCRXBNWCJC-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
817 "SYSTEMATIC NAME" ACDLabs 10.04 "3-(trifluoromethyl)benzyl N-carbamimidoylimidothiocarbamate"
817 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 N-carbamimidoyl-1-[[3-(trifluoromethyl)phenyl]methylsulfanyl]methanimidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
817 'Create component' 2005-08-29 RCSB
817 'Modify descriptor' 2011-06-04 RCSB
817 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 817
_pdbx_chem_comp_synonyms.name "3-(TRIFLUOROMETHYL)BENZYL N-[(E)-AMINO(IMINO)METHYL]IMIDOTHIOCARBAMATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 817
_pdbe_chem_comp_drugbank_details.drugbank_id DB07262
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '1-{[N-(1-Imino-guanidino-methyl)]sulfanylmethyl}-3-trifluoromethyl-benzene'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 817
_pdbe_chem_comp_synonyms.name '3-(TRIFLUOROMETHYL)BENZYL N-[(E)-AMINO(IMINO)METHYL]IMIDOTHIOCARBAMATE'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 817
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07262
_pdbe_chem_comp_drugbank_classification.parent Trifluoromethylbenzenes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as trifluoromethylbenzenes. These are organofluorine compounds that contain a benzene ring substituted with one or more trifluoromethyl groups.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 817
_pdbe_chem_comp_drugbank_targets.drugbank_id DB07262
_pdbe_chem_comp_drugbank_targets.name 'Dihydrofolate reductase'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P0ABQ4
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
817 N1 N 5.104 -5.768 1
817 C2 C 6.404 -2.018 2
817 N2 N 3.805 -3.518 3
817 N3 N 6.404 -3.518 4
817 C4 C 9.002 0.983 5
817 C6 C 11.600 0.983 6
817 C7 C 11.600 2.482 7
817 C9 C 10.301 4.732 8
817 C10 C 9.002 2.482 9
817 C1 C 5.104 -4.268 10
817 N4 N 5.104 -1.268 11
817 S1 S 7.702 -1.268 12
817 C3 C 7.702 0.233 13
817 C5 C 10.301 0.233 14
817 C8 C 10.301 3.232 15
817 F1 F 10.301 6.232 16
817 F2 F 11.801 4.732 17
817 F3 F 8.801 4.732 18
817 HN1 H 6.404 -6.518 19
817 HN4 H 5.105 0.232 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
817 N1 C1 DOUBLE NONE 1
817 C2 N3 SINGLE ENDDOWNRIGHT 2
817 C2 N4 DOUBLE NONE 3
817 C2 S1 SINGLE ENDUPRIGHT 4
817 N2 C1 SINGLE ENDUPRIGHT 5
817 N3 C1 SINGLE ENDDOWNRIGHT 6
817 C4 C10 DOUBLE NONE 7
817 C4 C3 SINGLE NONE 8
817 C4 C5 SINGLE NONE 9
817 C6 C7 SINGLE NONE 10
817 C6 C5 DOUBLE NONE 11
817 C7 C8 DOUBLE NONE 12
817 C9 C8 SINGLE NONE 13
817 C9 F1 SINGLE NONE 14
817 C9 F2 SINGLE NONE 15
817 C9 F3 SINGLE NONE 16
817 C10 C8 SINGLE NONE 17
817 S1 C3 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
817 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
817 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
817 C4 S1 1
817 C6 S1 1
817 C7 S1 1
817 C10 S1 1
817 C5 S1 1
817 C8 S1 1
817 C4 F1 1
817 C10 F1 1
817 C8 F1 1
817 C7 F1 1
817 C6 F1 1
817 C5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 817
_pdbe_chem_comp_rdkit_properties.exactmw 276.066
_pdbe_chem_comp_rdkit_properties.amw 276.287
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 121.516
_pdbe_chem_comp_rdkit_properties.tpsa 85.750
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.247
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.983
_pdbe_chem_comp_rdkit_properties.chi0v 9.147
_pdbe_chem_comp_rdkit_properties.chi1v 4.910
_pdbe_chem_comp_rdkit_properties.chi2v 1.929
_pdbe_chem_comp_rdkit_properties.chi3v 1.929
_pdbe_chem_comp_rdkit_properties.chi4v 1.164
_pdbe_chem_comp_rdkit_properties.chi0n 19.331
_pdbe_chem_comp_rdkit_properties.chi1n 9.329
_pdbe_chem_comp_rdkit_properties.chi2n 1.348
_pdbe_chem_comp_rdkit_properties.chi3n 1.348
_pdbe_chem_comp_rdkit_properties.chi4n 0.742
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.700
_pdbe_chem_comp_rdkit_properties.kappa1 5.120
_pdbe_chem_comp_rdkit_properties.kappa2 5.763
_pdbe_chem_comp_rdkit_properties.kappa3 4.659
_pdbe_chem_comp_rdkit_properties.Phi 1.639
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
817 UniChem ChEMBL CHEMBL387262
817 UniChem DrugBank DB07262
817 UniChem PDBe 817
817 UniChem 'PubChem TPHARMA' 17494768
817 UniChem PubChem 9543472
817 UniChem BindingDb 18052
817 UniChem BRENDA 132042
817 UniChem 'Probes And Drugs' PD005406
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
817 N1 5.115 0.835 -0.681 ETKDGv3 1
817 C2 2.273 0.232 -1.125 ETKDGv3 2
817 N2 5.511 -1.301 0.238 ETKDGv3 3
817 N3 3.256 -0.644 -0.547 ETKDGv3 4
817 C4 -1.332 -0.021 0.653 ETKDGv3 5
817 C6 -2.982 -1.625 1.480 ETKDGv3 6
817 C7 -4.046 -0.693 1.060 ETKDGv3 7
817 C9 -4.821 1.419 0.020 ETKDGv3 8
817 C10 -2.304 0.821 0.260 ETKDGv3 9
817 C1 4.644 -0.324 -0.345 ETKDGv3 10
817 N4 2.593 1.411 -1.554 ETKDGv3 11
817 S1 0.573 -0.329 -1.263 ETKDGv3 12
817 C3 0.111 0.295 0.385 ETKDGv3 13
817 C5 -1.696 -1.309 1.289 ETKDGv3 14
817 C8 -3.734 0.490 0.498 ETKDGv3 15
817 F1 -5.261 1.004 -1.223 ETKDGv3 16
817 F2 -5.887 1.413 0.903 ETKDGv3 17
817 F3 -4.348 2.715 -0.081 ETKDGv3 18
817 HN1 6.120 1.083 -0.540 ETKDGv3 19
817 HN21 6.522 -1.095 0.397 ETKDGv3 20
817 HN22 5.143 -2.238 0.514 ETKDGv3 21
817 HN3 2.929 -1.588 -0.242 ETKDGv3 22
817 H6 -3.245 -2.569 1.940 ETKDGv3 23
817 H7 -5.079 -0.982 1.207 ETKDGv3 24
817 H10 -2.045 1.747 -0.239 ETKDGv3 25
817 HN4 1.882 2.048 -1.976 ETKDGv3 26
817 H31 0.282 1.393 0.432 ETKDGv3 27
817 H32 0.751 -0.184 1.157 ETKDGv3 28
817 H5 -0.923 -2.003 1.594 ETKDGv3 29
#