data_81T
#
_chem_comp.id 81T
_chem_comp.name ~{N}-[(3~{R})-2,2,5,5-tetramethyl-1-oxidanyl-pyrrolidin-3-yl]ethanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H20 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-09-27
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 200.278
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 81T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7POY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
81T C10 C1 C 0 1 N N N N N N -30.036 -2.033 -0.794 -1.778 -0.881 -0.062 C10 81T 1
81T C13 C2 C 0 1 N N N N N N -28.908 -2.054 -1.857 -0.292 -1.267 -0.271 C13 81T 2
81T C01 C3 C 0 1 N N N N N N -27.370 -2.229 -6.273 4.056 0.012 -0.866 C01 81T 3
81T C02 C4 C 0 1 N N N N N N -27.886 -1.472 -5.031 2.830 -0.377 -0.082 C02 81T 4
81T C04 C5 C 0 1 N N R N N N -29.392 -1.511 -2.902 0.466 -0.130 0.453 C04 81T 5
81T C05 C6 C 0 1 N N N N N N -31.005 -1.703 -2.788 -0.529 1.044 0.509 C05 81T 6
81T C06 C7 C 0 1 N N N N N N -31.718 -0.610 -3.613 -0.837 1.398 1.965 C06 81T 7
81T C07 C8 C 0 1 N N N N N N -31.436 -3.109 -3.277 0.058 2.259 -0.213 C07 81T 8
81T C11 C9 C 0 1 N N N N N N -29.688 -1.033 0.331 -2.259 -1.316 1.324 C11 81T 9
81T C12 C10 C 0 1 N N N N N N -30.253 -3.449 -0.196 -2.654 -1.497 -1.154 C12 81T 10
81T N03 N1 N 0 1 N N N N N N -28.843 -2.151 -4.122 1.658 0.249 -0.309 N03 81T 11
81T N08 N2 N 0 1 N N N N N N -31.290 -1.591 -1.535 -1.767 0.600 -0.172 N08 81T 12
81T O09 O1 O 0 1 N N N N N N -32.173 -2.292 -1.263 -1.773 1.018 -1.574 O09 81T 13
81T O14 O2 O 0 1 N N N N N N -27.511 -0.364 -4.823 2.897 -1.254 0.753 O14 81T 14
81T H1 H1 H 0 1 N N N N N N -28.606 -3.090 -2.071 -0.075 -2.230 0.191 H1 81T 15
81T H2 H2 H 0 1 N N N N N N -28.037 -1.484 -1.500 -0.043 -1.285 -1.332 H2 81T 16
81T H3 H3 H 0 1 N N N N N N -26.675 -1.586 -6.832 4.117 -0.593 -1.771 H3 81T 17
81T H4 H4 H 0 1 N N N N N N -26.848 -3.143 -5.954 3.994 1.066 -1.138 H4 81T 18
81T H5 H5 H 0 1 N N N N N N -28.220 -2.498 -6.918 4.945 -0.154 -0.258 H5 81T 19
81T H6 H6 H 0 1 N N N N N N -29.193 -0.430 -2.943 0.743 -0.439 1.461 H6 81T 20
81T H7 H7 H 0 1 N N N N N N -31.404 0.382 -3.257 0.061 1.790 2.442 H7 81T 21
81T H8 H8 H 0 1 N N N N N N -31.451 -0.720 -4.675 -1.624 2.151 1.997 H8 81T 22
81T H9 H9 H 0 1 N N N N N N -32.807 -0.714 -3.496 -1.169 0.504 2.494 H9 81T 23
81T H10 H10 H 0 1 N N N N N N -30.922 -3.878 -2.682 0.254 2.003 -1.254 H10 81T 24
81T H11 H11 H 0 1 N N N N N N -32.524 -3.221 -3.159 -0.651 3.085 -0.170 H11 81T 25
81T H12 H12 H 0 1 N N N N N N -31.168 -3.226 -4.338 0.989 2.553 0.270 H12 81T 26
81T H13 H13 H 0 1 N N N N N N -30.495 -1.026 1.079 -2.367 -2.401 1.347 H13 81T 27
81T H14 H14 H 0 1 N N N N N N -28.745 -1.335 0.811 -1.532 -1.007 2.075 H14 81T 28
81T H15 H15 H 0 1 N N N N N N -29.576 -0.025 -0.096 -3.222 -0.851 1.537 H15 81T 29
81T H16 H16 H 0 1 N N N N N N -31.056 -3.411 0.555 -3.688 -1.180 -1.013 H16 81T 30
81T H17 H17 H 0 1 N N N N N N -30.534 -4.147 -0.999 -2.303 -1.166 -2.132 H17 81T 31
81T H18 H18 H 0 1 N N N N N N -29.323 -3.793 0.280 -2.596 -2.584 -1.097 H18 81T 32
81T H19 H19 H 0 1 N N N N N N -29.131 -3.083 -4.342 1.604 0.950 -0.977 H19 81T 33
81T H20 H20 H 0 1 N N N N N N -32.376 -2.203 -0.339 -2.565 0.750 -2.060 H20 81T 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
81T C01 C02 SING N N 1
81T C02 O14 DOUB N N 2
81T C02 N03 SING N N 3
81T N03 C04 SING N N 4
81T C06 C05 SING N N 5
81T C07 C05 SING N N 6
81T C04 C05 SING N N 7
81T C04 C13 SING N N 8
81T C05 N08 SING N N 9
81T C13 C10 SING N N 10
81T N08 O09 SING N N 11
81T N08 C10 SING N N 12
81T C10 C12 SING N N 13
81T C10 C11 SING N N 14
81T C13 H1 SING N N 15
81T C13 H2 SING N N 16
81T C01 H3 SING N N 17
81T C01 H4 SING N N 18
81T C01 H5 SING N N 19
81T C04 H6 SING N N 20
81T C06 H7 SING N N 21
81T C06 H8 SING N N 22
81T C06 H9 SING N N 23
81T C07 H10 SING N N 24
81T C07 H11 SING N N 25
81T C07 H12 SING N N 26
81T C11 H13 SING N N 27
81T C11 H14 SING N N 28
81T C11 H15 SING N N 29
81T C12 H16 SING N N 30
81T C12 H17 SING N N 31
81T C12 H18 SING N N 32
81T N03 H19 SING N N 33
81T O09 H20 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
81T InChI InChI 1.06 InChI=1S/C10H20N2O2/c1-7(13)11-8-6-9(2,3)12(14)10(8,4)5/h8,14H,6H2,1-5H3,(H,11,13)/t8-/m1/s1
81T InChIKey InChI 1.06 KYBFUZFDBKACCD-MRVPVSSYSA-N
81T SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@@H]1CC(C)(C)N(O)C1(C)C
81T SMILES CACTVS 3.385 CC(=O)N[CH]1CC(C)(C)N(O)C1(C)C
81T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(=O)N[C@@H]1CC(N(C1(C)C)O)(C)C
81T SMILES "OpenEye OEToolkits" 2.0.7 CC(=O)NC1CC(N(C1(C)C)O)(C)C
#
_pdbx_chem_comp_identifier.comp_id 81T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-[(3~{R})-2,2,5,5-tetramethyl-1-oxidanyl-pyrrolidin-3-yl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
81T 'Create component' 2021-09-27 PDBE
81T 'Initial release' 2022-07-20 RCSB
81T 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
81T C10 C 6.854 -1.189 1
81T C13 C 6.390 0.238 2
81T C01 C 6.110 2.979 3
81T C02 C 4.619 2.822 4
81T C04 C 4.890 0.238 5
81T C05 C 4.427 -1.189 6
81T C06 C 3.000 -0.725 7
81T C07 C 3.545 -2.402 8
81T C11 C 7.735 -2.402 9
81T C12 C 8.280 -0.725 10
81T N03 N 4.008 1.451 11
81T N08 N 5.640 -2.070 12
81T O09 O 5.640 -3.570 13
81T O14 O 3.737 4.035 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
81T C01 C02 SINGLE NONE 1
81T C02 O14 DOUBLE NONE 2
81T C02 N03 SINGLE NONE 3
81T C04 N03 SINGLE BEGINDASH 4
81T C06 C05 SINGLE NONE 5
81T C07 C05 SINGLE NONE 6
81T C04 C05 SINGLE NONE 7
81T C04 C13 SINGLE NONE 8
81T C05 N08 SINGLE NONE 9
81T C13 C10 SINGLE NONE 10
81T N08 O09 SINGLE NONE 11
81T N08 C10 SINGLE NONE 12
81T C10 C12 SINGLE NONE 13
81T C10 C11 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
81T MurckoScaffold S1 scaffold C1CCNC1 InChI=1S/C4H9N/c1-2-4-5-3-1/h5H,1-4H2 RWRDLPDLKQPQOW-UHFFFAOYSA-N
81T amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
81T C10 S1 1
81T C13 S1 1
81T C04 S1 1
81T C05 S1 1
81T N08 S1 1
81T N03 F1 1
81T C02 F1 1
81T O14 F1 1
81T C01 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 81T
_pdbe_chem_comp_rdkit_properties.exactmw 200.152
_pdbe_chem_comp_rdkit_properties.amw 200.282
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.900
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 113.482
_pdbe_chem_comp_rdkit_properties.tpsa 52.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.143
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.005
_pdbe_chem_comp_rdkit_properties.chi0v 6.711
_pdbe_chem_comp_rdkit_properties.chi1v 3.281
_pdbe_chem_comp_rdkit_properties.chi2v 1.465
_pdbe_chem_comp_rdkit_properties.chi3v 1.465
_pdbe_chem_comp_rdkit_properties.chi4v 0.871
_pdbe_chem_comp_rdkit_properties.chi0n 26.711
_pdbe_chem_comp_rdkit_properties.chi1n 13.137
_pdbe_chem_comp_rdkit_properties.chi2n 1.465
_pdbe_chem_comp_rdkit_properties.chi3n 1.465
_pdbe_chem_comp_rdkit_properties.chi4n 0.871
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.610
_pdbe_chem_comp_rdkit_properties.kappa1 1.844
_pdbe_chem_comp_rdkit_properties.kappa2 3.206
_pdbe_chem_comp_rdkit_properties.kappa3 1.766
_pdbe_chem_comp_rdkit_properties.Phi 0.422
#
_pdbe_chem_comp_external_mappings.comp_id 81T
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 81T
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
81T C10 -1.671 -1.056 -0.212 ETKDGv3 1
81T C13 -0.194 -1.497 -0.105 ETKDGv3 2
81T C01 4.342 0.440 0.523 ETKDGv3 3
81T C02 2.940 0.291 1.015 ETKDGv3 4
81T C04 0.516 -0.312 0.529 ETKDGv3 5
81T C05 -0.305 0.903 0.052 ETKDGv3 6
81T C06 0.175 1.413 -1.338 ETKDGv3 7
81T C07 -0.213 2.052 1.069 ETKDGv3 8
81T C11 -2.497 -1.719 0.902 ETKDGv3 9
81T C12 -2.253 -1.477 -1.585 ETKDGv3 10
81T N03 1.934 -0.256 0.151 ETKDGv3 11
81T N08 -1.697 0.410 0.018 ETKDGv3 12
81T O09 -2.447 1.071 -0.905 ETKDGv3 13
81T O14 2.656 0.627 2.197 ETKDGv3 14
81T H1 0.233 -1.699 -1.113 ETKDGv3 15
81T H2 -0.054 -2.416 0.508 ETKDGv3 16
81T H3 4.342 0.990 -0.441 ETKDGv3 17
81T H4 4.956 1.004 1.257 ETKDGv3 18
81T H5 4.789 -0.564 0.371 ETKDGv3 19
81T H6 0.422 -0.430 1.634 ETKDGv3 20
81T H7 1.226 1.769 -1.287 ETKDGv3 21
81T H8 -0.438 2.274 -1.681 ETKDGv3 22
81T H9 0.112 0.610 -2.100 ETKDGv3 23
81T H10 -0.857 2.900 0.750 ETKDGv3 24
81T H11 -0.557 1.718 2.071 ETKDGv3 25
81T H12 0.832 2.419 1.155 ETKDGv3 26
81T H13 -2.489 -2.826 0.795 ETKDGv3 27
81T H14 -2.083 -1.458 1.900 ETKDGv3 28
81T H15 -3.551 -1.368 0.862 ETKDGv3 29
81T H16 -1.717 -0.970 -2.415 ETKDGv3 30
81T H17 -2.153 -2.575 -1.726 ETKDGv3 31
81T H18 -3.332 -1.219 -1.653 ETKDGv3 32
81T H19 2.217 -0.531 -0.817 ETKDGv3 33
81T H20 -3.182 1.483 -0.383 ETKDGv3 34
#