data_82F
#
_chem_comp.id 82F
_chem_comp.name
N-[2-[(2S)-2-[(dipropylamino)methyl]piperidin-1-yl]ethyl]-6-oxidanylidene-5H-pyrido[2,3-b][1,4]benzodiazepine-11-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H38 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-03-24
_chem_comp.pdbx_modified_date 2018-11-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 478.630
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 82F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5XBA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
82F C4 C1 C 0 1 Y N N N N N -60.763 -12.749 12.551 -2.540 -0.797 -3.582 C4 82F 1
82F C5 C2 C 0 1 Y N N N N N -58.812 -13.602 11.727 -2.853 -0.423 -1.322 C5 82F 2
82F C6 C3 C 0 1 Y N N N N N -56.730 -14.804 12.169 -4.042 0.796 0.381 C6 82F 3
82F N1 N1 N 0 1 Y N N N N N -60.001 -13.824 12.302 -2.494 -0.005 -2.528 N1 82F 4
82F C7 C4 C 0 1 Y N N N N N -56.490 -15.804 13.112 -4.511 2.101 0.385 C7 82F 5
82F C8 C5 C 0 1 Y N N N N N -55.271 -15.853 13.763 -5.720 2.400 0.983 C8 82F 6
82F N2 N2 N 0 1 N N N N N N -57.992 -14.741 11.505 -2.843 0.488 -0.261 N2 82F 7
82F C9 C6 C 0 1 Y N N N N N -54.291 -14.924 13.485 -6.473 1.399 1.573 C9 82F 8
82F C10 C7 C 0 1 Y N N N N N -54.515 -13.927 12.551 -6.018 0.099 1.584 C10 82F 9
82F C11 C8 C 0 1 Y N N N N N -55.735 -13.854 11.886 -4.786 -0.217 1.001 C11 82F 10
82F C12 C9 C 0 1 N N N N N N -58.411 -15.769 10.609 -1.689 1.060 0.136 C12 82F 11
82F N3 N3 N 0 1 N N N N N N -57.460 -16.653 10.295 -0.535 0.755 -0.490 N3 82F 12
82F C13 C10 C 0 1 N N N N N N -57.784 -17.743 9.387 0.719 1.377 -0.058 C13 82F 13
82F C14 C11 C 0 1 N N N N N N -57.349 -17.432 7.972 1.868 0.864 -0.928 C14 82F 14
82F C15 C12 C 0 1 N N N N N N -56.370 -18.701 6.152 3.097 2.939 -0.716 C15 82F 15
82F N4 N4 N 0 1 N N N N N N -57.614 -18.312 6.830 3.126 1.488 -0.495 N4 82F 16
82F N N5 N 0 1 N N N N N N -57.087 -12.125 10.767 -3.598 -2.222 0.135 N 82F 17
82F C C13 C 0 1 N N N N N N -55.897 -12.733 10.907 -4.269 -1.587 1.084 C 82F 18
82F O O1 O 0 1 N N N N N N -54.934 -12.385 10.230 -4.476 -2.195 2.116 O 82F 19
82F C1 C14 C 0 1 Y N N N N N -58.348 -12.327 11.380 -3.272 -1.736 -1.128 C1 82F 20
82F C16 C15 C 0 1 N N N N N N -55.760 -17.540 5.404 4.358 3.572 -0.123 C16 82F 21
82F C17 C16 C 0 1 N N N N N N -56.738 -16.978 4.397 5.593 2.959 -0.789 C17 82F 22
82F C18 C17 C 0 1 N N N N N N -58.055 -16.604 5.065 5.573 1.442 -0.585 C18 82F 23
82F C19 C18 C 0 1 N N S N N N -58.606 -17.772 5.875 4.277 0.871 -1.165 C19 82F 24
82F C2 C19 C 0 1 Y N N N N N -59.162 -11.233 11.652 -3.356 -2.585 -2.227 C2 82F 25
82F C20 C20 C 0 1 N N N N N N -59.258 -18.890 5.056 4.244 -0.643 -0.946 C20 82F 26
82F C21 C21 C 0 1 N N N N N N -61.359 -18.603 6.274 3.176 -0.617 1.227 C21 82F 27
82F C22 C22 C 0 1 N N N N N N -61.747 -18.535 7.737 3.410 -0.843 2.722 C22 82F 28
82F C23 C23 C 0 1 N N N N N N -62.932 -17.627 7.962 2.181 -0.380 3.506 C23 82F 29
82F C24 C24 C 0 1 N N N N N N -60.646 -20.825 5.596 4.801 -2.332 0.697 C24 82F 30
82F C25 C25 C 0 1 N N N N N N -60.641 -21.829 6.725 6.284 -2.498 0.358 C25 82F 31
82F C26 C26 C 0 1 N N N N N N -61.116 -23.170 6.272 6.670 -3.975 0.469 C26 82F 32
82F C3 C27 C 0 1 Y N N N N N -60.391 -11.456 12.249 -2.982 -2.099 -3.472 C3 82F 33
82F N5 N6 N 0 1 N N N N N N -60.216 -19.481 5.998 4.404 -0.934 0.485 N5 82F 34
82F O1 O2 O 0 1 N N N N N N -59.557 -15.788 10.185 -1.689 1.850 1.060 O1 82F 35
82F H1 H1 H 0 1 N N N N N N -61.725 -12.905 13.016 -2.231 -0.419 -4.545 H1 82F 36
82F H2 H2 H 0 1 N N N N N N -57.253 -16.536 13.332 -3.930 2.885 -0.079 H2 82F 37
82F H3 H3 H 0 1 N N N N N N -55.085 -16.625 14.495 -6.078 3.419 0.990 H3 82F 38
82F H4 H4 H 0 1 N N N N N N -53.343 -14.974 13.999 -7.424 1.639 2.027 H4 82F 39
82F H5 H5 H 0 1 N N N N N N -53.741 -13.204 12.338 -6.612 -0.677 2.043 H5 82F 40
82F H6 H6 H 0 1 N N N N N N -56.540 -16.567 10.678 -0.535 0.125 -1.227 H6 82F 41
82F H7 H7 H 0 1 N N N N N N -58.872 -17.907 9.399 0.641 2.460 -0.160 H7 82F 42
82F H8 H8 H 0 1 N N N N N N -57.272 -18.655 9.726 0.910 1.123 0.984 H8 82F 43
82F H9 H9 H 0 1 N N N N N N -56.256 -17.314 8.013 1.946 -0.218 -0.826 H9 82F 44
82F H10 H10 H 0 1 N N N N N N -57.813 -16.467 7.721 1.677 1.118 -1.970 H10 82F 45
82F H11 H11 H 0 1 N N N N N N -56.589 -19.510 5.439 3.058 3.142 -1.786 H11 82F 46
82F H12 H12 H 0 1 N N N N N N -55.651 -19.060 6.903 2.217 3.363 -0.233 H12 82F 47
82F H14 H14 H 0 1 N N N N N N -57.081 -11.383 10.097 -3.303 -3.122 0.342 H14 82F 48
82F H15 H15 H 0 1 N N N N N N -54.858 -17.884 4.877 4.344 4.647 -0.301 H15 82F 49
82F H16 H16 H 0 1 N N N N N N -55.488 -16.752 6.121 4.390 3.381 0.950 H16 82F 50
82F H17 H17 H 0 1 N N N N N N -56.930 -17.734 3.621 5.580 3.184 -1.856 H17 82F 51
82F H18 H18 H 0 1 N N N N N N -56.302 -16.080 3.934 6.494 3.376 -0.339 H18 82F 52
82F H19 H19 H 0 1 N N N N N N -57.888 -15.748 5.735 6.428 0.996 -1.094 H19 82F 53
82F H20 H20 H 0 1 N N N N N N -58.785 -16.327 4.291 5.625 1.217 0.480 H20 82F 54
82F H21 H21 H 0 1 N N N N N N -59.416 -17.348 6.487 4.233 1.084 -2.233 H21 82F 55
82F H22 H22 H 0 1 N N N N N N -58.843 -10.232 11.403 -3.705 -3.601 -2.114 H22 82F 56
82F H23 H23 H 0 1 N N N N N N -59.773 -18.483 4.173 3.290 -1.040 -1.293 H23 82F 57
82F H24 H24 H 0 1 N N N N N N -58.511 -19.631 4.736 5.057 -1.109 -1.504 H24 82F 58
82F H25 H25 H 0 1 N N N N N N -61.104 -17.588 5.937 2.368 -1.264 0.884 H25 82F 59
82F H26 H26 H 0 1 N N N N N N -62.224 -18.972 5.704 2.906 0.424 1.054 H26 82F 60
82F H27 H27 H 0 1 N N N N N N -62.003 -19.547 8.085 3.581 -1.903 2.907 H27 82F 61
82F H28 H28 H 0 1 N N N N N N -60.892 -18.154 8.315 4.282 -0.273 3.043 H28 82F 62
82F H29 H29 H 0 1 N N N N N N -63.180 -17.606 9.033 2.010 0.680 3.321 H29 82F 63
82F H30 H30 H 0 1 N N N N N N -62.684 -16.610 7.623 1.309 -0.951 3.185 H30 82F 64
82F H31 H31 H 0 1 N N N N N N -63.795 -18.003 7.393 2.348 -0.541 4.571 H31 82F 65
82F H32 H32 H 0 1 N N N N N N -61.669 -20.757 5.197 4.206 -2.980 0.054 H32 82F 66
82F H33 H33 H 0 1 N N N N N N -59.968 -21.185 4.808 4.634 -2.603 1.740 H33 82F 67
82F H34 H34 H 0 1 N N N N N N -59.616 -21.926 7.112 6.464 -2.151 -0.659 H34 82F 68
82F H35 H35 H 0 1 N N N N N N -61.303 -21.468 7.526 6.883 -1.912 1.054 H35 82F 69
82F H36 H36 H 0 1 N N N N N N -61.098 -23.871 7.119 6.489 -4.322 1.486 H36 82F 70
82F H37 H37 H 0 1 N N N N N N -62.143 -23.085 5.888 6.070 -4.561 -0.228 H37 82F 71
82F H38 H38 H 0 1 N N N N N N -60.457 -23.542 5.474 7.726 -4.093 0.227 H38 82F 72
82F H39 H39 H 0 1 N N N N N N -61.049 -10.630 12.475 -3.037 -2.733 -4.344 H39 82F 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
82F C17 C18 SING N N 1
82F C17 C16 SING N N 2
82F C20 C19 SING N N 3
82F C20 N5 SING N N 4
82F C18 C19 SING N N 5
82F C16 C15 SING N N 6
82F C24 N5 SING N N 7
82F C24 C25 SING N N 8
82F C19 N4 SING N N 9
82F N5 C21 SING N N 10
82F C15 N4 SING N N 11
82F C26 C25 SING N N 12
82F C21 C22 SING N N 13
82F N4 C14 SING N N 14
82F C22 C23 SING N N 15
82F C14 C13 SING N N 16
82F C13 N3 SING N N 17
82F O1 C12 DOUB N N 18
82F O C DOUB N N 19
82F N3 C12 SING N N 20
82F C12 N2 SING N N 21
82F N C SING N N 22
82F N C1 SING N N 23
82F C C11 SING N N 24
82F C1 C2 DOUB Y N 25
82F C1 C5 SING Y N 26
82F N2 C5 SING N N 27
82F N2 C6 SING N N 28
82F C2 C3 SING Y N 29
82F C5 N1 DOUB Y N 30
82F C11 C6 DOUB Y N 31
82F C11 C10 SING Y N 32
82F C6 C7 SING Y N 33
82F C3 C4 DOUB Y N 34
82F N1 C4 SING Y N 35
82F C10 C9 DOUB Y N 36
82F C7 C8 DOUB Y N 37
82F C9 C8 SING Y N 38
82F C4 H1 SING N N 39
82F C7 H2 SING N N 40
82F C8 H3 SING N N 41
82F C9 H4 SING N N 42
82F C10 H5 SING N N 43
82F N3 H6 SING N N 44
82F C13 H7 SING N N 45
82F C13 H8 SING N N 46
82F C14 H9 SING N N 47
82F C14 H10 SING N N 48
82F C15 H11 SING N N 49
82F C15 H12 SING N N 50
82F N H14 SING N N 51
82F C16 H15 SING N N 52
82F C16 H16 SING N N 53
82F C17 H17 SING N N 54
82F C17 H18 SING N N 55
82F C18 H19 SING N N 56
82F C18 H20 SING N N 57
82F C19 H21 SING N N 58
82F C2 H22 SING N N 59
82F C20 H23 SING N N 60
82F C20 H24 SING N N 61
82F C21 H25 SING N N 62
82F C21 H26 SING N N 63
82F C22 H27 SING N N 64
82F C22 H28 SING N N 65
82F C23 H29 SING N N 66
82F C23 H30 SING N N 67
82F C23 H31 SING N N 68
82F C24 H32 SING N N 69
82F C24 H33 SING N N 70
82F C25 H34 SING N N 71
82F C25 H35 SING N N 72
82F C26 H36 SING N N 73
82F C26 H37 SING N N 74
82F C26 H38 SING N N 75
82F C3 H39 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
82F InChI InChI 1.03 InChI=1S/C27H38N6O2/c1-3-16-31(17-4-2)20-21-10-7-8-18-32(21)19-15-29-27(35)33-24-13-6-5-11-22(24)26(34)30-23-12-9-14-28-25(23)33/h5-6,9,11-14,21H,3-4,7-8,10,15-20H2,1-2H3,(H,29,35)(H,30,34)/t21-/m0/s1
82F InChIKey InChI 1.03 MZDYABXXPZNUCT-NRFANRHFSA-N
82F SMILES_CANONICAL CACTVS 3.385 CCCN(CCC)C[C@@H]1CCCCN1CCNC(=O)N2c3ccccc3C(=O)Nc4cccnc24
82F SMILES CACTVS 3.385 CCCN(CCC)C[CH]1CCCCN1CCNC(=O)N2c3ccccc3C(=O)Nc4cccnc24
82F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCN(CCC)C[C@@H]1CCCCN1CCNC(=O)N2c3ccccc3C(=O)Nc4c2nccc4
82F SMILES "OpenEye OEToolkits" 2.0.6 CCCN(CCC)CC1CCCCN1CCNC(=O)N2c3ccccc3C(=O)Nc4c2nccc4
#
_pdbx_chem_comp_identifier.comp_id 82F
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
~{N}-[2-[(2~{S})-2-[(dipropylamino)methyl]piperidin-1-yl]ethyl]-6-oxidanylidene-5~{H}-pyrido[2,3-b][1,4]benzodiazepine-11-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
82F 'Create component' 2017-03-24 RCSB
82F 'Initial release' 2018-11-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
82F C4 C 17.369 2.951 1
82F C5 C 14.744 3.582 2
82F C6 C 12.041 3.582 3
82F N1 N 15.873 2.502 4
82F C7 C 10.912 2.502 5
82F C8 C 9.415 2.951 6
82F N2 N 13.392 2.931 7
82F C9 C 9.068 4.474 8
82F C10 C 10.221 5.528 9
82F C11 C 11.707 5.045 10
82F C12 C 13.392 1.431 11
82F N3 N 12.093 0.681 12
82F C13 C 12.093 -0.819 13
82F C14 C 10.794 -1.569 14
82F C15 C 12.093 -3.819 15
82F N4 N 10.794 -3.069 16
82F N N 14.142 6.217 17
82F C C 12.642 6.217 18
82F O O 11.992 7.569 19
82F C1 C 15.078 5.045 20
82F C16 C 12.093 -5.319 21
82F C17 C 10.794 -6.069 22
82F C18 C 9.495 -5.319 23
82F C19 C 9.495 -3.819 24
82F C2 C 16.563 5.528 25
82F C20 C 8.196 -3.069 26
82F C21 C 6.897 -5.319 27
82F C22 C 5.598 -6.069 28
82F C23 C 5.598 -7.569 29
82F C24 C 5.598 -3.069 30
82F C25 C 4.299 -3.819 31
82F C26 C 3.000 -3.069 32
82F C3 C 17.717 4.474 33
82F N5 N 6.897 -3.819 34
82F O1 O 14.691 0.681 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
82F C17 C18 SINGLE NONE 1
82F C17 C16 SINGLE NONE 2
82F C19 C20 SINGLE BEGINWEDGE 3
82F C20 N5 SINGLE NONE 4
82F C18 C19 SINGLE NONE 5
82F C16 C15 SINGLE NONE 6
82F C24 N5 SINGLE NONE 7
82F C24 C25 SINGLE NONE 8
82F C19 N4 SINGLE NONE 9
82F N5 C21 SINGLE NONE 10
82F C15 N4 SINGLE NONE 11
82F C26 C25 SINGLE NONE 12
82F C21 C22 SINGLE NONE 13
82F N4 C14 SINGLE NONE 14
82F C22 C23 SINGLE NONE 15
82F C14 C13 SINGLE NONE 16
82F C13 N3 SINGLE NONE 17
82F O1 C12 DOUBLE NONE 18
82F O C DOUBLE NONE 19
82F N3 C12 SINGLE NONE 20
82F C12 N2 SINGLE NONE 21
82F N C SINGLE NONE 22
82F N C1 SINGLE NONE 23
82F C C11 SINGLE NONE 24
82F C1 C2 DOUBLE NONE 25
82F C1 C5 SINGLE NONE 26
82F N2 C5 SINGLE NONE 27
82F N2 C6 SINGLE NONE 28
82F C2 C3 SINGLE NONE 29
82F C5 N1 DOUBLE NONE 30
82F C11 C6 DOUBLE NONE 31
82F C11 C10 SINGLE NONE 32
82F C6 C7 SINGLE NONE 33
82F C3 C4 DOUBLE NONE 34
82F N1 C4 SINGLE NONE 35
82F C10 C9 DOUBLE NONE 36
82F C7 C8 DOUBLE NONE 37
82F C9 C8 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
82F MurckoScaffold S1 scaffold O=C1Nc2cccnc2N(C(=O)NCCN2CCCCC2)c2ccccc21 InChI=1S/C20H23N5O2/c26-19-15-7-2-3-9-17(15)25(18-16(23-19)8-6-10-21-18)20(27)22-11-14-24-12-4-1-5-13-24/h2-3,6-10H,1,4-5,11-14H2,(H,22,27)(H,23,26) GLUCVLAUVSZFBV-UHFFFAOYSA-N
82F amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
82F phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
82F pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
82F Z1245580425 F4 fragment CC1CCCCN1CCN InChI=1S/C8H18N2/c1-8-4-2-3-6-10(8)7-5-9/h8H,2-7,9H2,1H3 DBSDZVMWEMKFCH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
82F C4 S1 1
82F C5 S1 1
82F C6 S1 1
82F N1 S1 1
82F C7 S1 1
82F C8 S1 1
82F N2 S1 1
82F C9 S1 1
82F C10 S1 1
82F C11 S1 1
82F C12 S1 1
82F N3 S1 1
82F C13 S1 1
82F C14 S1 1
82F C15 S1 1
82F N4 S1 1
82F N S1 1
82F C S1 1
82F O S1 1
82F C1 S1 1
82F C16 S1 1
82F C17 S1 1
82F C18 S1 1
82F C19 S1 1
82F C2 S1 1
82F C3 S1 1
82F O1 S1 1
82F N F1 1
82F C F1 1
82F O F1 1
82F C11 F1 1
82F C6 F2 1
82F C11 F2 1
82F C10 F2 1
82F C9 F2 1
82F C8 F2 1
82F C7 F2 1
82F C4 F3 1
82F C3 F3 1
82F C2 F3 1
82F C1 F3 1
82F C5 F3 1
82F N1 F3 1
82F C20 F4 1
82F C19 F4 1
82F C18 F4 1
82F C17 F4 1
82F C16 F4 1
82F C15 F4 1
82F N4 F4 1
82F C14 F4 1
82F C13 F4 1
82F N3 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 82F
_pdbe_chem_comp_rdkit_properties.exactmw 478.306
_pdbe_chem_comp_rdkit_properties.amw 478.641
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.519
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 261.743
_pdbe_chem_comp_rdkit_properties.tpsa 80.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.275
_pdbe_chem_comp_rdkit_properties.CrippenMR 137.666
_pdbe_chem_comp_rdkit_properties.chi0v 17.000
_pdbe_chem_comp_rdkit_properties.chi1v 9.012
_pdbe_chem_comp_rdkit_properties.chi2v 3.833
_pdbe_chem_comp_rdkit_properties.chi3v 3.833
_pdbe_chem_comp_rdkit_properties.chi4v 2.511
_pdbe_chem_comp_rdkit_properties.chi0n 55.000
_pdbe_chem_comp_rdkit_properties.chi1n 27.907
_pdbe_chem_comp_rdkit_properties.chi2n 3.833
_pdbe_chem_comp_rdkit_properties.chi3n 3.833
_pdbe_chem_comp_rdkit_properties.chi4n 2.511
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.970
_pdbe_chem_comp_rdkit_properties.kappa1 5.783
_pdbe_chem_comp_rdkit_properties.kappa2 12.130
_pdbe_chem_comp_rdkit_properties.kappa3 5.998
_pdbe_chem_comp_rdkit_properties.Phi 2.004
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
82F UniChem ChEMBL CHEMBL1318307
82F UniChem PDBe 82F
82F UniChem ZINC ZINC000022454208
82F UniChem PubChem 6604853
82F UniChem Nikkaji J386.363H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
82F C4 -3.937 3.635 2.019 ETKDGv3 1
82F C5 -4.130 1.435 1.088 ETKDGv3 2
82F C6 -5.090 -0.812 1.159 ETKDGv3 3
82F N1 -3.744 2.213 2.062 ETKDGv3 4
82F C7 -5.445 -1.594 2.371 ETKDGv3 5
82F C8 -6.512 -2.399 2.370 ETKDGv3 6
82F N2 -3.926 0.024 1.185 ETKDGv3 7
82F C9 -7.347 -2.514 1.162 ETKDGv3 8
82F C10 -7.044 -1.805 0.069 ETKDGv3 9
82F C11 -5.870 -0.891 0.058 ETKDGv3 10
82F C12 -2.622 -0.531 1.458 ETKDGv3 11
82F N3 -1.435 0.268 1.310 ETKDGv3 12
82F C13 -0.098 -0.259 1.575 ETKDGv3 13
82F C14 0.369 -1.142 0.418 ETKDGv3 14
82F C15 1.851 -3.063 0.908 ETKDGv3 15
82F N4 1.759 -1.598 0.680 ETKDGv3 16
82F N -5.136 1.203 -1.241 ETKDGv3 17
82F C -5.558 -0.171 -1.200 ETKDGv3 18
82F O -5.750 -0.770 -2.292 ETKDGv3 19
82F C1 -4.792 2.014 -0.105 ETKDGv3 20
82F C16 2.168 -3.872 -0.375 ETKDGv3 21
82F C17 1.793 -3.115 -1.654 ETKDGv3 22
82F C18 2.467 -1.731 -1.724 ETKDGv3 23
82F C19 2.760 -1.149 -0.318 ETKDGv3 24
82F C2 -4.958 3.345 -0.163 ETKDGv3 25
82F C20 2.922 0.386 -0.322 ETKDGv3 26
82F C21 5.209 1.368 -0.339 ETKDGv3 27
82F C22 5.960 0.306 0.475 ETKDGv3 28
82F C23 6.650 -0.720 -0.423 ETKDGv3 29
82F C24 3.770 1.549 -2.351 ETKDGv3 30
82F C25 3.580 3.073 -2.151 ETKDGv3 31
82F C26 2.364 3.445 -1.306 ETKDGv3 32
82F C3 -4.523 4.198 0.959 ETKDGv3 33
82F N5 4.105 0.777 -1.128 ETKDGv3 34
82F O1 -2.516 -1.743 1.794 ETKDGv3 35
82F H1 -3.606 4.247 2.848 ETKDGv3 36
82F H2 -4.841 -1.509 3.265 ETKDGv3 37
82F H3 -6.766 -2.967 3.256 ETKDGv3 38
82F H4 -8.206 -3.172 1.163 ETKDGv3 39
82F H5 -7.671 -1.895 -0.809 ETKDGv3 40
82F H6 -1.509 1.261 0.996 ETKDGv3 41
82F H7 0.609 0.591 1.690 ETKDGv3 42
82F H8 -0.097 -0.835 2.526 ETKDGv3 43
82F H9 0.284 -0.564 -0.526 ETKDGv3 44
82F H10 -0.336 -1.993 0.303 ETKDGv3 45
82F H11 2.660 -3.249 1.647 ETKDGv3 46
82F H12 0.926 -3.456 1.385 ETKDGv3 47
82F H14 -5.159 1.669 -2.177 ETKDGv3 48
82F H15 3.256 -4.099 -0.405 ETKDGv3 49
82F H16 1.627 -4.842 -0.347 ETKDGv3 50
82F H17 0.689 -2.997 -1.695 ETKDGv3 51
82F H18 2.090 -3.716 -2.540 ETKDGv3 52
82F H19 3.425 -1.817 -2.282 ETKDGv3 53
82F H20 1.810 -1.049 -2.304 ETKDGv3 54
82F H21 3.744 -1.559 -0.001 ETKDGv3 55
82F H22 -5.407 3.808 -1.033 ETKDGv3 56
82F H23 3.018 0.733 0.732 ETKDGv3 57
82F H24 1.994 0.848 -0.711 ETKDGv3 58
82F H25 5.951 1.853 -1.012 ETKDGv3 59
82F H26 4.823 2.154 0.348 ETKDGv3 60
82F H27 6.735 0.813 1.090 ETKDGv3 61
82F H28 5.270 -0.208 1.176 ETKDGv3 62
82F H29 7.393 -0.219 -1.080 ETKDGv3 63
82F H30 7.180 -1.466 0.206 ETKDGv3 64
82F H31 5.910 -1.253 -1.055 ETKDGv3 65
82F H32 4.597 1.407 -3.080 ETKDGv3 66
82F H33 2.869 1.125 -2.845 ETKDGv3 67
82F H34 3.444 3.529 -3.156 ETKDGv3 68
82F H35 4.488 3.540 -1.717 ETKDGv3 69
82F H36 1.447 2.965 -1.710 ETKDGv3 70
82F H37 2.221 4.546 -1.332 ETKDGv3 71
82F H38 2.516 3.147 -0.249 ETKDGv3 72
82F H39 -4.669 5.270 0.917 ETKDGv3 73
#