data_83M
#
_chem_comp.id 83M
_chem_comp.name
N-[(1R)-1-{(6S)-6-[(2-amino-2-oxoethyl)carbamoyl]-1,4,5,6-tetrahydropyrimidin-2-yl}-2-(4-hydroxyphenyl)ethyl]-N~2~-tetradecanoyl-L-glutamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H54 N6 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-12-21
_chem_comp.pdbx_modified_date 2017-02-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 658.829
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 83M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5UBK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
83M C8 C1 C 0 1 N N N N N N 26.725 33.470 9.977 11.297 -1.619 0.211 C8 83M 1
83M C9 C2 C 0 1 N N N N N N 26.890 34.603 10.932 12.479 -1.237 1.104 C9 83M 2
83M C16 C3 C 0 1 N N N N N N 26.405 28.058 0.091 -0.035 1.820 -4.725 C16 83M 3
83M C6 C4 C 0 1 N N N N N N 26.815 31.112 9.754 8.974 -1.002 -0.473 C6 83M 4
83M C5 C5 C 0 1 N N N N N N 27.451 30.962 8.413 7.834 -0.004 -0.264 C5 83M 5
83M N23 N1 N 0 1 N N N N N N 25.550 28.417 2.278 0.900 1.596 -2.496 N23 83M 6
83M C1 C6 C 0 1 N N N N N N 26.299 29.073 4.371 3.189 1.230 -1.633 C1 83M 7
83M C2 C7 C 0 1 N N N N N N 25.903 28.717 5.761 4.329 0.231 -1.842 C2 83M 8
83M C3 C8 C 0 1 N N N N N N 26.947 29.153 6.745 5.511 0.613 -0.949 C3 83M 9
83M C4 C9 C 0 1 N N N N N N 26.452 30.341 7.498 6.652 -0.386 -1.158 C4 83M 10
83M C7 C10 C 0 1 N N N N N N 27.450 32.256 10.465 10.156 -0.620 0.420 C7 83M 11
83M C13 C11 C 0 1 N N N N N N 26.303 39.341 11.460 17.124 -2.470 2.473 C13 83M 12
83M C12 C12 C 0 1 N N N N N N 25.862 38.111 10.777 15.941 -2.852 1.580 C12 83M 13
83M C11 C13 C 0 1 N N N N N N 26.827 37.016 11.046 14.801 -1.854 1.788 C11 83M 14
83M C10 C14 C 0 1 N N N N N N 26.327 35.824 10.321 13.619 -2.236 0.895 C10 83M 15
83M C14 C15 C 0 1 N N N N N N 25.982 28.027 3.406 2.024 0.853 -2.513 C14 83M 16
83M C15 C16 C 0 1 N N S N N N 25.445 27.594 1.135 -0.232 1.230 -3.352 C15 83M 17
83M C17 C17 C 0 1 N N R N N N 20.859 25.457 -2.365 -4.741 1.672 0.963 C17 83M 18
83M C18 C18 C 0 1 N N N N N N 20.873 24.423 -3.463 -4.687 1.533 2.485 C18 83M 19
83M C19 C19 C 0 1 N N N N N N 23.996 27.634 0.702 -1.527 1.774 -2.744 C19 83M 20
83M C20 C20 C 0 1 N N N N N N 23.606 26.397 -0.055 -1.791 1.083 -1.405 C20 83M 21
83M C21 C21 C 0 1 N N N N N N 22.287 26.436 -0.735 -3.066 1.618 -0.806 C21 83M 22
83M C22 C22 C 0 1 N N N N N N 20.273 26.720 -2.839 -5.914 0.891 0.428 C22 83M 23
83M C23 C23 C 0 1 Y N N N N N 20.897 23.047 -2.884 -3.591 2.411 3.031 C23 83M 24
83M C24 C24 C 0 1 Y N N N N N 20.065 22.761 -1.858 -3.868 3.717 3.391 C24 83M 25
83M C25 C25 C 0 1 Y N N N N N 20.072 21.535 -1.300 -2.865 4.524 3.892 C25 83M 26
83M C26 C26 C 0 1 Y N N N N N 20.914 20.586 -1.747 -1.579 4.024 4.034 C26 83M 27
83M C27 C27 C 0 1 Y N N N N N 21.753 20.849 -2.774 -1.304 2.713 3.672 C27 83M 28
83M C28 C28 C 0 1 Y N N N N N 21.750 22.085 -3.353 -2.312 1.908 3.177 C28 83M 29
83M C29 C29 C 0 1 N N N N N N 17.396 28.118 -4.281 -7.049 -2.625 0.446 C29 83M 30
83M C32 C30 C 0 1 N N N N N N 20.603 28.780 -4.086 -7.954 0.852 -0.872 C32 83M 31
83M C33 C31 C 0 1 N N N N N N 19.382 29.339 -3.397 -7.767 -0.666 -0.921 C33 83M 32
83M C34 C32 C 0 1 N N S N N N 18.378 28.218 -3.141 -7.281 -1.137 0.463 C34 83M 33
83M C35 C33 C 0 1 N N N N N N 14.985 27.996 -4.094 -7.867 -4.918 0.551 C35 83M 34
83M C36 C34 C 0 1 N N N N N N 14.149 27.665 -5.287 -9.185 -5.633 0.703 C36 83M 35
83M N24 N2 N 0 1 N N N N N N 22.152 25.758 -1.838 -3.501 1.151 0.381 N24 83M 36
83M N30 N3 N 0 1 N N N N N N 21.010 27.584 -3.365 -6.776 1.496 -0.302 N30 83M 37
83M N31 N4 N 0 1 N N N N N N 18.994 26.978 -2.696 -6.014 -0.440 0.737 N31 83M 38
83M N32 N5 N 0 1 N N N N N N 16.305 27.396 -4.143 -8.092 -3.471 0.568 N32 83M 39
83M N40 N6 N 0 1 N N N N N N 12.812 28.092 -5.363 -9.224 -6.980 0.715 N40 83M 40
83M O15 O1 O 0 1 N N N N N N 26.126 26.912 3.655 2.099 -0.118 -3.236 O15 83M 41
83M O17 O2 O 0 1 N N N N N N 26.902 27.266 -0.699 0.949 2.478 -4.964 O17 83M 42
83M O18 O3 O 0 1 N N N N N N 26.700 29.223 0.030 -0.954 1.614 -5.681 O18 83M 43
83M O22 O4 O 0 1 N N N N N N 21.408 27.034 -0.245 -3.701 2.469 -1.393 O22 83M 44
83M O29 O5 O 0 1 N N N N N N 20.895 19.391 -1.196 -0.590 4.816 4.526 O29 83M 45
83M O30 O6 O 0 1 N N N N N N 17.573 28.714 -5.300 -5.925 -3.063 0.322 O30 83M 46
83M O39 O7 O 0 1 N N N N N N 14.643 27.050 -6.193 -10.211 -4.996 0.814 O39 83M 47
83M H1 H1 H 0 1 N N N N N N 27.130 33.762 8.997 11.609 -1.600 -0.833 H1 83M 48
83M H2 H2 H 0 1 N N N N N N 25.655 33.235 9.877 10.954 -2.621 0.470 H2 83M 49
83M H3 H3 H 0 1 N N N N N N 26.358 34.378 11.868 12.821 -0.235 0.845 H3 83M 50
83M H4 H4 H 0 1 N N N N N N 27.958 34.755 11.145 12.166 -1.255 2.148 H4 83M 51
83M H5 H5 H 0 1 N N N N N N 25.739 31.304 9.633 8.632 -2.004 -0.214 H5 83M 52
83M H6 H6 H 0 1 N N N N N N 26.959 30.190 10.336 9.287 -0.984 -1.517 H6 83M 53
83M H7 H7 H 0 1 N N N N N N 28.338 30.317 8.491 7.521 -0.022 0.780 H7 83M 54
83M H8 H8 H 0 1 N N N N N N 27.748 31.949 8.028 8.176 0.998 -0.524 H8 83M 55
83M H9 H9 H 0 1 N N N N N N 25.265 29.372 2.193 0.840 2.373 -1.918 H9 83M 56
83M H10 H10 H 0 1 N N N N N N 27.384 29.253 4.350 2.876 1.211 -0.589 H10 83M 57
83M H11 H11 H 0 1 N N N N N N 25.769 29.992 4.079 3.531 2.231 -1.892 H11 83M 58
83M H12 H12 H 0 1 N N N N N N 24.951 29.213 6.002 3.987 -0.771 -1.583 H12 83M 59
83M H13 H13 H 0 1 N N N N N N 25.776 27.627 5.831 4.642 0.250 -2.886 H13 83M 60
83M H14 H14 H 0 1 N N N N N N 27.154 28.333 7.448 5.854 1.615 -1.208 H14 83M 61
83M H15 H15 H 0 1 N N N N N N 27.870 29.417 6.208 5.199 0.594 0.095 H15 83M 62
83M H16 H16 H 0 1 N N N N N N 26.137 31.102 6.768 6.964 -0.367 -2.202 H16 83M 63
83M H17 H17 H 0 1 N N N N N N 25.585 30.028 8.099 6.309 -1.388 -0.899 H17 83M 64
83M H18 H18 H 0 1 N N N N N N 27.332 32.147 11.553 9.844 -0.639 1.464 H18 83M 65
83M H19 H19 H 0 1 N N N N N N 28.520 32.319 10.216 10.499 0.382 0.161 H19 83M 66
83M H20 H20 H 0 1 N N N N N N 25.586 40.150 11.259 17.936 -3.182 2.324 H20 83M 67
83M H21 H21 H 0 1 N N N N N N 26.356 39.160 12.544 17.466 -1.468 2.214 H21 83M 68
83M H22 H22 H 0 1 N N N N N N 27.297 39.631 11.088 16.811 -2.489 3.517 H22 83M 69
83M H23 H23 H 0 1 N N N N N N 25.809 38.293 9.694 16.254 -2.834 0.536 H23 83M 70
83M H24 H24 H 0 1 N N N N N N 24.868 37.822 11.150 15.599 -3.854 1.839 H24 83M 71
83M H25 H25 H 0 1 N N N N N N 26.877 36.811 12.125 14.489 -1.872 2.833 H25 83M 72
83M H26 H26 H 0 1 N N N N N N 27.826 37.292 10.679 15.144 -0.852 1.530 H26 83M 73
83M H27 H27 H 0 1 N N N N N N 26.634 35.881 9.266 13.277 -3.237 1.155 H27 83M 74
83M H28 H28 H 0 1 N N N N N N 25.229 35.792 10.382 13.932 -2.217 -0.149 H28 83M 75
83M H29 H29 H 0 1 N N N N N N 25.696 26.557 1.403 -0.294 0.145 -3.428 H29 83M 76
83M H30 H30 H 0 1 N N N N N N 20.228 25.071 -1.551 -4.854 2.723 0.697 H30 83M 77
83M H31 H31 H 0 1 N N N N N N 21.767 24.569 -4.087 -5.643 1.837 2.912 H31 83M 78
83M H32 H32 H 0 1 N N N N N N 19.971 24.540 -4.082 -4.486 0.495 2.749 H32 83M 79
83M H33 H33 H 0 1 N N N N N N 23.842 28.511 0.056 -1.431 2.848 -2.586 H33 83M 80
83M H34 H34 H 0 1 N N N N N N 23.360 27.720 1.595 -2.356 1.580 -3.423 H34 83M 81
83M H35 H35 H 0 1 N N N N N N 23.593 25.558 0.656 -1.887 0.009 -1.563 H35 83M 82
83M H36 H36 H 0 1 N N N N N N 24.374 26.216 -0.821 -0.961 1.277 -0.725 H36 83M 83
83M H37 H37 H 0 1 N N N N N N 19.392 23.518 -1.484 -4.869 4.107 3.280 H37 83M 84
83M H38 H38 H 0 1 N N N N N N 19.396 21.312 -0.487 -3.082 5.545 4.173 H38 83M 85
83M H39 H39 H 0 1 N N N N N N 22.424 20.083 -3.135 -0.304 2.321 3.781 H39 83M 86
83M H40 H40 H 0 1 N N N N N N 22.416 22.302 -4.175 -2.099 0.886 2.900 H40 83M 87
83M H41 H41 H 0 1 N N N N N N 20.361 28.525 -5.128 -8.113 1.228 -1.883 H41 83M 88
83M H42 H42 H 0 1 N N N N N N 21.415 29.522 -4.069 -8.825 1.088 -0.261 H42 83M 89
83M H43 H43 H 0 1 N N N N N N 19.678 29.791 -2.439 -8.717 -1.145 -1.158 H43 83M 90
83M H44 H44 H 0 1 N N N N N N 18.920 30.105 -4.037 -7.027 -0.920 -1.680 H44 83M 91
83M H45 H45 H 0 1 N N N N N N 17.781 28.570 -2.286 -8.022 -0.885 1.222 H45 83M 92
83M H46 H46 H 0 1 N N N N N N 15.098 29.089 -4.038 -7.208 -5.193 1.374 H46 83M 93
83M H47 H47 H 0 1 N N N N N N 14.469 27.634 -3.193 -7.406 -5.204 -0.395 H47 83M 94
83M H48 H48 H 0 1 N N N N N N 22.967 25.443 -2.324 -2.994 0.471 0.850 H48 83M 95
83M H49 H49 H 0 1 N N N N N N 18.415 26.289 -2.260 -5.264 -0.914 1.128 H49 83M 96
83M H50 H50 H 0 1 N N N N N N 16.388 26.402 -4.070 -8.991 -3.121 0.666 H50 83M 97
83M H51 H51 H 0 1 N N N N N N 12.266 27.884 -6.175 -8.403 -7.490 0.626 H51 83M 98
83M H52 H52 H 0 1 N N N N N N 12.407 28.604 -4.605 -10.072 -7.440 0.813 H52 83M 99
83M H53 H53 H 0 1 N N N N N N 27.321 29.356 -0.677 -0.784 2.012 -6.546 H53 83M 100
83M H54 H54 H 0 1 N N N N N N 20.255 19.375 -0.494 -0.499 4.778 5.488 H54 83M 101
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
83M O39 C36 DOUB N N 1
83M N40 C36 SING N N 2
83M O30 C29 DOUB N N 3
83M C36 C35 SING N N 4
83M C29 N32 SING N N 5
83M C29 C34 SING N N 6
83M N32 C35 SING N N 7
83M C32 C33 SING N N 8
83M C32 N30 SING N N 9
83M C18 C23 SING N N 10
83M C18 C17 SING N N 11
83M C33 C34 SING N N 12
83M N30 C22 DOUB N N 13
83M C28 C23 DOUB Y N 14
83M C28 C27 SING Y N 15
83M C34 N31 SING N N 16
83M C23 C24 SING Y N 17
83M C22 N31 SING N N 18
83M C22 C17 SING N N 19
83M C27 C26 DOUB Y N 20
83M C17 N24 SING N N 21
83M C24 C25 DOUB Y N 22
83M N24 C21 SING N N 23
83M C26 C25 SING Y N 24
83M C26 O29 SING N N 25
83M C21 O22 DOUB N N 26
83M C21 C20 SING N N 27
83M O17 C16 DOUB N N 28
83M C20 C19 SING N N 29
83M O18 C16 SING N N 30
83M C16 C15 SING N N 31
83M C19 C15 SING N N 32
83M C15 N23 SING N N 33
83M N23 C14 SING N N 34
83M C14 O15 DOUB N N 35
83M C14 C1 SING N N 36
83M C1 C2 SING N N 37
83M C2 C3 SING N N 38
83M C3 C4 SING N N 39
83M C4 C5 SING N N 40
83M C5 C6 SING N N 41
83M C6 C7 SING N N 42
83M C8 C7 SING N N 43
83M C8 C9 SING N N 44
83M C10 C9 SING N N 45
83M C10 C11 SING N N 46
83M C12 C11 SING N N 47
83M C12 C13 SING N N 48
83M C8 H1 SING N N 49
83M C8 H2 SING N N 50
83M C9 H3 SING N N 51
83M C9 H4 SING N N 52
83M C6 H5 SING N N 53
83M C6 H6 SING N N 54
83M C5 H7 SING N N 55
83M C5 H8 SING N N 56
83M N23 H9 SING N N 57
83M C1 H10 SING N N 58
83M C1 H11 SING N N 59
83M C2 H12 SING N N 60
83M C2 H13 SING N N 61
83M C3 H14 SING N N 62
83M C3 H15 SING N N 63
83M C4 H16 SING N N 64
83M C4 H17 SING N N 65
83M C7 H18 SING N N 66
83M C7 H19 SING N N 67
83M C13 H20 SING N N 68
83M C13 H21 SING N N 69
83M C13 H22 SING N N 70
83M C12 H23 SING N N 71
83M C12 H24 SING N N 72
83M C11 H25 SING N N 73
83M C11 H26 SING N N 74
83M C10 H27 SING N N 75
83M C10 H28 SING N N 76
83M C15 H29 SING N N 77
83M C17 H30 SING N N 78
83M C18 H31 SING N N 79
83M C18 H32 SING N N 80
83M C19 H33 SING N N 81
83M C19 H34 SING N N 82
83M C20 H35 SING N N 83
83M C20 H36 SING N N 84
83M C24 H37 SING N N 85
83M C25 H38 SING N N 86
83M C27 H39 SING N N 87
83M C28 H40 SING N N 88
83M C32 H41 SING N N 89
83M C32 H42 SING N N 90
83M C33 H43 SING N N 91
83M C33 H44 SING N N 92
83M C34 H45 SING N N 93
83M C35 H46 SING N N 94
83M C35 H47 SING N N 95
83M N24 H48 SING N N 96
83M N31 H49 SING N N 97
83M N32 H50 SING N N 98
83M N40 H51 SING N N 99
83M N40 H52 SING N N 100
83M O18 H53 SING N N 101
83M O29 H54 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
83M SMILES ACDLabs 12.01 C(CCCCCCCC(NC(C(=O)O)CCC(=O)NC(Cc1ccc(O)cc1)C=2NC(C(NCC(N)=O)=O)CCN=2)=O)CCCCC
83M InChI InChI 1.03 InChI=1S/C34H54N6O7/c1-2-3-4-5-6-7-8-9-10-11-12-13-30(43)38-27(34(46)47)18-19-31(44)39-28(22-24-14-16-25(41)17-15-24)32-36-21-20-26(40-32)33(45)37-23-29(35)42/h14-17,26-28,41H,2-13,18-23H2,1H3,(H2,35,42)(H,36,40)(H,37,45)(H,38,43)(H,39,44)(H,46,47)/t26-,27-,28+/m0/s1
83M InChIKey InChI 1.03 DGAYEIHJKULBKL-HZFUHODCSA-N
83M SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCC(=O)N[C@@H](CCC(=O)N[C@H](Cc1ccc(O)cc1)C2=NCC[C@H](N2)C(=O)NCC(N)=O)C(O)=O
83M SMILES CACTVS 3.385 CCCCCCCCCCCCCC(=O)N[CH](CCC(=O)N[CH](Cc1ccc(O)cc1)C2=NCC[CH](N2)C(=O)NCC(N)=O)C(O)=O
83M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCC(=O)N[C@@H](CCC(=O)N[C@H](Cc1ccc(cc1)O)C2=NCC[C@H](N2)C(=O)NCC(=O)N)C(=O)O
83M SMILES "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCC(=O)NC(CCC(=O)NC(Cc1ccc(cc1)O)C2=NCCC(N2)C(=O)NCC(=O)N)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
83M "SYSTEMATIC NAME" ACDLabs 12.01 N-[(1R)-1-{(6S)-6-[(2-amino-2-oxoethyl)carbamoyl]-1,4,5,6-tetrahydropyrimidin-2-yl}-2-(4-hydroxyphenyl)ethyl]-N~2~-tetradecanoyl-L-glutamine
83M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-5-[[(1~{R})-1-[(6~{S})-6-[(2-azanyl-2-oxidanylidene-ethyl)carbamoyl]-1,4,5,6-tetrahydropyrimidin-2-yl]-2-(4-hydroxyphenyl)ethyl]amino]-5-oxidanylidene-2-(tetradecanoylamino)pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
83M 'Create component' 2016-12-21 RCSB
83M 'Initial release' 2017-03-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
83M C8 C 24.590 7.965 1
83M C9 C 24.590 9.465 2
83M C16 C 19.394 -4.035 3
83M C6 C 23.291 5.715 4
83M C5 C 21.992 4.965 5
83M N23 N 18.095 -1.785 6
83M C1 C 19.394 0.465 7
83M C2 C 20.693 1.215 8
83M C3 C 20.693 2.715 9
83M C4 C 21.992 3.465 10
83M C7 C 23.291 7.215 11
83M C13 C 27.188 13.965 12
83M C12 C 27.188 12.465 13
83M C11 C 25.889 11.715 14
83M C10 C 25.889 10.215 15
83M C14 C 19.394 -1.035 16
83M C15 C 18.095 -3.285 17
83M C17 C 14.198 -8.535 18
83M C18 C 14.198 -10.035 19
83M C19 C 16.796 -4.035 20
83M C20 C 16.796 -5.535 21
83M C21 C 15.497 -6.285 22
83M C22 C 12.899 -7.785 23
83M C23 C 15.497 -10.785 24
83M C24 C 15.497 -12.285 25
83M C25 C 16.796 -13.035 26
83M C26 C 18.095 -12.285 27
83M C27 C 18.095 -10.785 28
83M C28 C 16.796 -10.035 29
83M C29 C 9.002 -8.535 30
83M C32 C 11.600 -5.535 31
83M C33 C 10.301 -6.285 32
83M C34 C 10.301 -7.785 33
83M C35 C 6.404 -8.535 34
83M C36 C 5.104 -7.785 35
83M N24 N 15.497 -7.785 36
83M N30 N 12.899 -6.285 37
83M N31 N 11.600 -8.535 38
83M N32 N 7.702 -7.785 39
83M N40 N 3.805 -8.535 40
83M O15 O 20.693 -1.785 41
83M O17 O 20.693 -3.285 42
83M O18 O 19.394 -5.535 43
83M O22 O 14.198 -5.535 44
83M O29 O 19.394 -13.035 45
83M O30 O 9.002 -10.035 46
83M O39 O 5.104 -6.285 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
83M O39 C36 DOUBLE NONE 1
83M N40 C36 SINGLE NONE 2
83M O30 C29 DOUBLE NONE 3
83M C36 C35 SINGLE NONE 4
83M C29 N32 SINGLE NONE 5
83M C34 C29 SINGLE BEGINDASH 6
83M N32 C35 SINGLE NONE 7
83M C32 C33 SINGLE NONE 8
83M C32 N30 SINGLE NONE 9
83M C18 C23 SINGLE NONE 10
83M C17 C18 SINGLE BEGINDASH 11
83M C33 C34 SINGLE NONE 12
83M N30 C22 DOUBLE NONE 13
83M C28 C23 SINGLE NONE 14
83M C28 C27 DOUBLE NONE 15
83M C34 N31 SINGLE NONE 16
83M C23 C24 DOUBLE NONE 17
83M C22 N31 SINGLE NONE 18
83M C22 C17 SINGLE NONE 19
83M C27 C26 SINGLE NONE 20
83M C17 N24 SINGLE NONE 21
83M C24 C25 SINGLE NONE 22
83M N24 C21 SINGLE NONE 23
83M C26 C25 DOUBLE NONE 24
83M C26 O29 SINGLE NONE 25
83M C21 O22 DOUBLE NONE 26
83M C21 C20 SINGLE NONE 27
83M O17 C16 DOUBLE NONE 28
83M C20 C19 SINGLE NONE 29
83M O18 C16 SINGLE NONE 30
83M C16 C15 SINGLE NONE 31
83M C15 C19 SINGLE BEGINDASH 32
83M C15 N23 SINGLE NONE 33
83M N23 C14 SINGLE NONE 34
83M C14 O15 DOUBLE NONE 35
83M C14 C1 SINGLE NONE 36
83M C1 C2 SINGLE NONE 37
83M C2 C3 SINGLE NONE 38
83M C3 C4 SINGLE NONE 39
83M C4 C5 SINGLE NONE 40
83M C5 C6 SINGLE NONE 41
83M C6 C7 SINGLE NONE 42
83M C8 C7 SINGLE NONE 43
83M C8 C9 SINGLE NONE 44
83M C10 C9 SINGLE NONE 45
83M C10 C11 SINGLE NONE 46
83M C12 C11 SINGLE NONE 47
83M C12 C13 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
83M MurckoScaffold S1 scaffold c1ccc(CCC2=NCCCN2)cc1 InChI=1S/C12H16N2/c1-2-5-11(6-3-1)7-8-12-13-9-4-10-14-12/h1-3,5-6H,4,7-10H2,(H,13,14) KLAJFXHCZDKHTF-UHFFFAOYSA-N
83M amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
83M peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
83M phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
83M C17 S1 1
83M C18 S1 1
83M C22 S1 1
83M C23 S1 1
83M C24 S1 1
83M C25 S1 1
83M C26 S1 1
83M C27 S1 1
83M C28 S1 1
83M C32 S1 1
83M C33 S1 1
83M C34 S1 1
83M N30 S1 1
83M N31 S1 1
83M N23 F1 1
83M C14 F1 1
83M O15 F1 1
83M C1 F1 1
83M N24 F1 2
83M C21 F1 2
83M O22 F1 2
83M C20 F1 2
83M N32 F1 3
83M C29 F1 3
83M O30 F1 3
83M C34 F1 3
83M N40 F1 4
83M C36 F1 4
83M O39 F1 4
83M C35 F1 4
83M O17 F2 1
83M C16 F2 1
83M C15 F2 1
83M N23 F2 1
83M O30 F2 2
83M C29 F2 2
83M C34 F2 2
83M N31 F2 2
83M O39 F2 3
83M C36 F2 3
83M C35 F2 3
83M N32 F2 3
83M C23 F3 1
83M C28 F3 1
83M C27 F3 1
83M C26 F3 1
83M C25 F3 1
83M C24 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 83M
_pdbe_chem_comp_rdkit_properties.exactmw 658.405
_pdbe_chem_comp_rdkit_properties.amw 658.841
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 26
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 101
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.647
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 353.865
_pdbe_chem_comp_rdkit_properties.tpsa 212.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.315
_pdbe_chem_comp_rdkit_properties.CrippenMR 178.791
_pdbe_chem_comp_rdkit_properties.chi0v 22.541
_pdbe_chem_comp_rdkit_properties.chi1v 11.389
_pdbe_chem_comp_rdkit_properties.chi2v 3.769
_pdbe_chem_comp_rdkit_properties.chi3v 3.769
_pdbe_chem_comp_rdkit_properties.chi4v 2.129
_pdbe_chem_comp_rdkit_properties.chi0n 76.541
_pdbe_chem_comp_rdkit_properties.chi1n 37.888
_pdbe_chem_comp_rdkit_properties.chi2n 3.769
_pdbe_chem_comp_rdkit_properties.chi3n 3.769
_pdbe_chem_comp_rdkit_properties.chi4n 2.129
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.160
_pdbe_chem_comp_rdkit_properties.kappa1 7.834
_pdbe_chem_comp_rdkit_properties.kappa2 22.381
_pdbe_chem_comp_rdkit_properties.kappa3 16.817
_pdbe_chem_comp_rdkit_properties.Phi 3.731
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
83M UniChem PDBe 83M
83M UniChem ZINC ZINC000584905359
83M UniChem PubChem 124219482
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
83M C8 8.595 -1.682 0.822 ETKDGv3 1
83M C9 9.495 -0.845 1.746 ETKDGv3 2
83M C16 -1.821 -0.011 -2.420 ETKDGv3 3
83M C6 6.073 -1.506 1.198 ETKDGv3 4
83M C5 4.867 -2.097 1.944 ETKDGv3 5
83M N23 0.516 -0.243 -1.838 ETKDGv3 6
83M C1 2.061 -2.263 -1.688 ETKDGv3 7
83M C2 2.709 -2.444 -0.308 ETKDGv3 8
83M C3 3.086 -1.100 0.339 ETKDGv3 9
83M C4 3.590 -1.253 1.785 ETKDGv3 10
83M C7 7.359 -2.276 1.532 ETKDGv3 11
83M C13 11.618 3.037 3.048 ETKDGv3 12
83M C12 10.780 2.084 2.201 ETKDGv3 13
83M C11 9.757 1.331 3.064 ETKDGv3 14
83M C10 8.816 0.447 2.231 ETKDGv3 15
83M C14 0.698 -1.644 -1.579 ETKDGv3 16
83M C15 -0.727 0.459 -1.502 ETKDGv3 17
83M C17 -5.227 1.586 -1.562 ETKDGv3 18
83M C18 -6.253 2.730 -1.475 ETKDGv3 19
83M C19 -0.521 1.990 -1.599 ETKDGv3 20
83M C20 -1.594 2.814 -0.867 ETKDGv3 21
83M C21 -2.943 2.702 -1.516 ETKDGv3 22
83M C22 -5.760 0.303 -0.972 ETKDGv3 23
83M C23 -7.522 2.395 -2.216 ETKDGv3 24
83M C24 -7.596 2.542 -3.551 ETKDGv3 25
83M C25 -8.825 2.160 -4.277 ETKDGv3 26
83M C26 -9.871 1.648 -3.609 ETKDGv3 27
83M C27 -9.790 1.472 -2.144 ETKDGv3 28
83M C28 -8.681 1.825 -1.483 ETKDGv3 29
83M C29 -5.626 -1.599 1.886 ETKDGv3 30
83M C32 -6.181 -2.083 -1.195 ETKDGv3 31
83M C33 -7.198 -1.954 -0.058 ETKDGv3 32
83M C34 -6.691 -0.975 1.015 ETKDGv3 33
83M C35 -3.205 -1.804 2.581 ETKDGv3 34
83M C36 -1.882 -1.183 2.244 ETKDGv3 35
83M N24 -3.990 1.962 -0.872 ETKDGv3 36
83M N30 -5.796 -0.770 -1.707 ETKDGv3 37
83M N31 -6.199 0.258 0.398 ETKDGv3 38
83M N32 -4.229 -1.392 1.623 ETKDGv3 39
83M N40 -0.789 -1.987 1.804 ETKDGv3 40
83M O15 -0.277 -2.358 -1.220 ETKDGv3 41
83M O17 -2.739 -0.752 -1.977 ETKDGv3 42
83M O18 -1.801 0.332 -3.769 ETKDGv3 43
83M O22 -3.139 3.237 -2.641 ETKDGv3 44
83M O29 -11.036 1.279 -4.279 ETKDGv3 45
83M O30 -5.981 -2.325 2.854 ETKDGv3 46
83M O39 -1.736 0.065 2.345 ETKDGv3 47
83M H1 8.301 -1.080 -0.066 ETKDGv3 48
83M H2 9.210 -2.525 0.438 ETKDGv3 49
83M H3 9.806 -1.458 2.621 ETKDGv3 50
83M H4 10.412 -0.590 1.174 ETKDGv3 51
83M H5 5.898 -1.572 0.103 ETKDGv3 52
83M H6 6.186 -0.437 1.471 ETKDGv3 53
83M H7 4.685 -3.140 1.609 ETKDGv3 54
83M H8 5.104 -2.143 3.030 ETKDGv3 55
83M H9 1.326 0.297 -2.219 ETKDGv3 56
83M H10 2.718 -1.645 -2.338 ETKDGv3 57
83M H11 1.961 -3.259 -2.171 ETKDGv3 58
83M H12 2.020 -3.009 0.357 ETKDGv3 59
83M H13 3.627 -3.053 -0.447 ETKDGv3 60
83M H14 3.844 -0.577 -0.282 ETKDGv3 61
83M H15 2.190 -0.444 0.373 ETKDGv3 62
83M H16 3.776 -0.239 2.203 ETKDGv3 63
83M H17 2.784 -1.712 2.399 ETKDGv3 64
83M H18 7.229 -3.329 1.196 ETKDGv3 65
83M H19 7.515 -2.304 2.633 ETKDGv3 66
83M H20 10.968 3.796 3.534 ETKDGv3 67
83M H21 12.171 2.474 3.830 ETKDGv3 68
83M H22 12.352 3.562 2.402 ETKDGv3 69
83M H23 10.253 2.671 1.418 ETKDGv3 70
83M H24 11.465 1.367 1.702 ETKDGv3 71
83M H25 10.283 0.713 3.825 ETKDGv3 72
83M H26 9.135 2.076 3.608 ETKDGv3 73
83M H27 8.422 1.023 1.365 ETKDGv3 74
83M H28 7.956 0.174 2.879 ETKDGv3 75
83M H29 -0.993 0.211 -0.450 ETKDGv3 76
83M H30 -4.995 1.405 -2.637 ETKDGv3 77
83M H31 -6.484 2.962 -0.413 ETKDGv3 78
83M H32 -5.810 3.654 -1.907 ETKDGv3 79
83M H33 0.453 2.242 -1.124 ETKDGv3 80
83M H34 -0.449 2.311 -2.662 ETKDGv3 81
83M H35 -1.646 2.498 0.197 ETKDGv3 82
83M H36 -1.290 3.883 -0.875 ETKDGv3 83
83M H37 -6.754 2.934 -4.110 ETKDGv3 84
83M H38 -8.870 2.292 -5.350 ETKDGv3 85
83M H39 -10.630 1.054 -1.604 ETKDGv3 86
83M H40 -8.631 1.687 -0.410 ETKDGv3 87
83M H41 -6.614 -2.685 -2.021 ETKDGv3 88
83M H42 -5.274 -2.608 -0.825 ETKDGv3 89
83M H43 -8.152 -1.566 -0.478 ETKDGv3 90
83M H44 -7.402 -2.953 0.385 ETKDGv3 91
83M H45 -7.554 -0.713 1.666 ETKDGv3 92
83M H46 -3.129 -2.912 2.585 ETKDGv3 93
83M H47 -3.495 -1.471 3.601 ETKDGv3 94
83M H48 -3.831 1.638 0.109 ETKDGv3 95
83M H49 -6.087 1.101 1.004 ETKDGv3 96
83M H50 -3.937 -0.924 0.735 ETKDGv3 97
83M H51 -0.892 -3.021 1.696 ETKDGv3 98
83M H52 0.131 -1.546 1.581 ETKDGv3 99
83M H53 -2.530 0.014 -4.396 ETKDGv3 100
83M H54 -11.130 1.384 -5.283 ETKDGv3 101
#