data_84Q
#
_chem_comp.id 84Q
_chem_comp.name
"[(2S)-2-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-(13-methyltetradecanoyloxy)ethyl] 13-methyltetradecanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H68 N O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-25
_chem_comp.pdbx_modified_date 2022-12-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 649.879
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 84Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7VZR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
84Q C11 C1 C 0 1 N N N N N N 131.320 111.342 155.883 -5.877 -0.330 0.169 C11 84Q 1
84Q C21 C2 C 0 1 N N N N N N 134.342 112.955 160.217 7.081 -0.529 0.593 C21 84Q 2
84Q C31 C3 C 0 1 N N N N N N 129.978 120.869 153.007 16.205 -4.129 -2.110 C31 84Q 3
84Q C4 C4 C 0 1 N N N N N N 125.831 115.663 152.705 -14.047 -3.534 -0.323 C4 84Q 4
84Q C5 C5 C 0 1 N N N N N N 126.216 114.500 153.334 -12.629 -3.411 -0.883 C5 84Q 5
84Q C6 C6 C 0 1 N N N N N N 127.169 114.730 154.294 -11.797 -2.507 0.028 C6 84Q 6
84Q C7 C7 C 0 1 N N N N N N 127.758 113.566 154.657 -10.378 -2.384 -0.533 C7 84Q 7
84Q C8 C8 C 0 1 N N N N N N 128.901 113.890 155.346 -9.546 -1.480 0.379 C8 84Q 8
84Q N N1 N 0 1 N N N N N N 136.254 103.663 151.516 -1.013 5.933 -3.996 N 84Q 9
84Q C C9 C 0 1 N N N N N N 123.189 115.365 150.740 -17.164 -5.361 -1.648 C 84Q 10
84Q O O1 O 0 1 N N N N N N 133.812 109.299 155.631 -3.306 2.074 2.404 O 84Q 11
84Q C1 C10 C 0 1 N N N N N N 123.978 116.246 151.496 -16.297 -4.561 -0.673 C1 84Q 12
84Q O1 O2 O 0 1 N N N N N N 133.335 107.263 156.276 -1.523 1.841 1.120 O1 84Q 13
84Q C2 C11 C 0 1 N N N N N N 123.358 117.556 151.727 -16.251 -5.280 0.677 C2 84Q 14
84Q O2 O3 O 0 1 N N N N N N 136.288 107.404 158.207 1.292 1.580 1.473 O2 84Q 15
84Q C3 C12 C 0 1 N N N N N N 124.396 115.698 152.600 -14.879 -4.438 -1.234 C3 84Q 16
84Q O3 O4 O 0 1 N N N N N N 137.657 109.140 158.254 3.213 2.613 1.114 O3 84Q 17
84Q O6 O5 O 0 1 N N N N N N 138.508 107.141 153.988 -0.447 5.692 0.718 O6 84Q 18
84Q P P1 P 0 1 N N N N N N 138.350 106.094 154.995 0.663 5.051 -0.023 P 84Q 19
84Q O5 O6 O 0 1 N N N N N N 139.473 106.016 155.950 2.067 5.645 0.495 O5 84Q 20
84Q O7 O7 O 0 1 N N N N N N 138.427 104.878 154.050 0.501 5.352 -1.597 O7 84Q 21
84Q C32 C13 C 0 1 N N N N N N 137.926 104.939 152.715 0.390 6.673 -2.129 C32 84Q 22
84Q C33 C14 C 0 1 N N N N N N 136.493 104.541 152.666 0.251 6.599 -3.651 C33 84Q 23
84Q O4 O8 O 0 1 N N N N N N 137.006 106.216 156.225 0.627 3.461 0.226 O4 84Q 24
84Q C16 C15 C 0 1 N N S N N N 136.042 107.168 156.824 0.642 2.878 1.531 C16 84Q 25
84Q C17 C16 C 0 1 N N N N N N 136.663 108.630 158.604 2.616 1.571 1.253 C17 84Q 26
84Q C18 C17 C 0 1 N N N N N N 135.809 109.204 159.703 3.359 0.262 1.180 C18 84Q 27
84Q C19 C18 C 0 1 N N N N N N 135.852 110.693 160.097 4.843 0.531 0.924 C19 84Q 28
84Q C20 C19 C 0 1 N N N N N N 134.643 111.532 159.640 5.597 -0.798 0.850 C20 84Q 29
84Q C22 C20 C 0 1 N N N N N N 134.146 114.007 159.110 7.835 -1.858 0.519 C22 84Q 30
84Q C23 C21 C 0 1 N N N N N N 132.938 114.875 159.147 9.319 -1.589 0.262 C23 84Q 31
84Q C24 C22 C 0 1 N N N N N N 132.439 115.535 157.838 10.073 -2.918 0.188 C24 84Q 32
84Q C25 C23 C 0 1 N N N N N N 131.950 116.943 157.859 11.557 -2.649 -0.069 C25 84Q 33
84Q C26 C24 C 0 1 N N N N N N 130.885 117.377 156.781 12.311 -3.978 -0.143 C26 84Q 34
84Q C27 C25 C 0 1 N N N N N N 130.949 118.829 156.265 13.796 -3.709 -0.400 C27 84Q 35
84Q C28 C26 C 0 1 N N N N N N 130.036 119.227 155.093 14.550 -5.038 -0.474 C28 84Q 36
84Q C29 C27 C 0 1 N N N N N N 130.229 120.611 154.455 16.034 -4.769 -0.730 C29 84Q 37
84Q C30 C28 C 0 1 N N N N N N 129.723 121.780 155.173 16.808 -6.088 -0.680 C30 84Q 38
84Q C15 C29 C 0 1 N N N N N N 134.458 106.855 157.090 -0.794 2.707 2.030 C15 84Q 39
84Q C14 C30 C 0 1 N N N N N N 133.090 108.561 156.140 -2.807 1.588 1.417 C14 84Q 40
84Q C13 C31 C 0 1 N N N N N N 131.809 109.063 156.676 -3.627 0.697 0.519 C13 84Q 41
84Q C12 C32 C 0 1 N N N N N N 131.856 110.529 156.967 -5.045 0.574 1.080 C12 84Q 42
84Q C10 C33 C 0 1 N N N N N N 130.256 112.279 156.198 -7.296 -0.453 0.729 C10 84Q 43
84Q C9 C34 C 0 1 N N N N N N 129.933 113.036 155.110 -8.128 -1.357 -0.182 C9 84Q 44
84Q H1 H1 H 0 1 N N N N N N 130.934 110.653 155.117 -5.918 0.102 -0.832 H1 84Q 45
84Q H2 H2 H 0 1 N N N N N N 132.155 111.923 155.466 -5.419 -1.317 0.120 H2 84Q 46
84Q H3 H3 H 0 1 N N N N N N 135.185 113.264 160.853 7.195 0.007 -0.350 H3 84Q 47
84Q H4 H4 H 0 1 N N N N N N 133.425 112.904 160.822 7.487 0.074 1.405 H4 84Q 48
84Q H5 H5 H 0 1 N N N N N N 130.182 121.926 152.782 15.821 -4.805 -2.874 H5 84Q 49
84Q H6 H6 H 0 1 N N N N N N 130.638 120.231 152.401 15.654 -3.189 -2.145 H6 84Q 50
84Q H7 H7 H 0 1 N N N N N N 128.929 120.640 152.770 17.262 -3.937 -2.293 H7 84Q 51
84Q H8 H8 H 0 1 N N N N N N 126.273 115.700 151.699 -14.006 -3.965 0.678 H8 84Q 52
84Q H9 H9 H 0 1 N N N N N N 126.177 116.528 153.289 -14.505 -2.546 -0.274 H9 84Q 53
84Q H10 H10 H 0 1 N N N N N N 125.335 114.044 153.809 -12.170 -4.398 -0.932 H10 84Q 54
84Q H11 H11 H 0 1 N N N N N N 126.627 113.809 152.583 -12.670 -2.980 -1.884 H11 84Q 55
84Q H12 H12 H 0 1 N N N N N N 127.932 115.413 153.892 -12.255 -1.519 0.077 H12 84Q 56
84Q H13 H13 H 0 1 N N N N N N 126.694 115.187 155.175 -11.755 -2.938 1.028 H13 84Q 57
84Q H14 H14 H 0 1 N N N N N N 127.081 112.985 155.301 -9.920 -3.372 -0.582 H14 84Q 58
84Q H15 H15 H 0 1 N N N N N N 128.010 112.976 153.764 -10.419 -1.952 -1.533 H15 84Q 59
84Q H16 H16 H 0 1 N N N N N N 129.212 114.903 155.050 -10.004 -0.492 0.428 H16 84Q 60
84Q H17 H17 H 0 1 N N N N N N 128.675 113.876 156.423 -9.505 -1.911 1.379 H17 84Q 61
84Q H18 H18 H 0 1 N N N N N N 135.289 103.401 151.491 -1.128 5.872 -4.997 H18 84Q 62
84Q H19 H19 H 0 1 N N N N N N 136.490 104.146 150.673 -1.069 5.021 -3.569 H19 84Q 63
84Q H21 H21 H 0 1 N N N N N N 123.722 114.411 150.613 -18.174 -5.449 -1.248 H21 84Q 64
84Q H22 H22 H 0 1 N N N N N N 122.237 115.186 151.262 -17.196 -4.849 -2.610 H22 84Q 65
84Q H23 H23 H 0 1 N N N N N N 122.989 115.807 149.753 -16.738 -6.356 -1.780 H23 84Q 66
84Q H24 H24 H 0 1 N N N N N N 124.867 116.454 150.882 -16.723 -3.566 -0.541 H24 84Q 67
84Q H25 H25 H 0 1 N N N N N N 124.037 118.183 152.324 -15.634 -4.709 1.371 H25 84Q 68
84Q H26 H26 H 0 1 N N N N N N 123.162 118.044 150.761 -17.262 -5.367 1.076 H26 84Q 69
84Q H27 H27 H 0 1 N N N N N N 122.410 117.423 152.270 -15.825 -6.274 0.544 H27 84Q 70
84Q H28 H28 H 0 1 N N N N N N 123.997 116.272 153.449 -14.920 -4.006 -2.234 H28 84Q 71
84Q H29 H29 H 0 1 N N N N N N 124.017 114.666 152.644 -14.421 -5.426 -1.283 H29 84Q 72
84Q H30 H30 H 0 1 N N N N N N 140.119 106.679 155.735 2.840 5.269 0.052 H30 84Q 73
84Q H31 H31 H 0 1 N N N N N N 138.511 104.258 152.080 -0.488 7.162 -1.708 H31 84Q 74
84Q H32 H32 H 0 1 N N N N N N 138.027 105.968 152.339 1.282 7.244 -1.873 H32 84Q 75
84Q H33 H33 H 0 1 N N N N N N 135.868 105.441 152.573 1.085 6.032 -4.065 H33 84Q 76
84Q H34 H34 H 0 1 N N N N N N 136.231 104.008 153.592 0.255 7.607 -4.066 H34 84Q 77
84Q H35 H35 H 0 1 N N N N N N 136.093 108.119 156.273 1.189 3.528 2.213 H35 84Q 78
84Q H36 H36 H 0 1 N N N N N N 134.767 108.993 159.421 3.244 -0.274 2.123 H36 84Q 79
84Q H37 H37 H 0 1 N N N N N N 136.064 108.640 160.613 2.953 -0.341 0.368 H37 84Q 80
84Q H38 H38 H 0 1 N N N N N N 136.758 111.135 159.656 4.957 1.067 -0.019 H38 84Q 81
84Q H39 H39 H 0 1 N N N N N N 134.753 111.660 158.553 5.191 -1.401 0.037 H39 84Q 82
84Q H40 H40 H 0 1 N N N N N N 134.126 113.467 158.152 7.721 -2.394 1.461 H40 84Q 83
84Q H41 H41 H 0 1 N N N N N N 135.022 114.672 159.138 7.430 -2.461 -0.294 H41 84Q 84
84Q H42 H42 H 0 1 N N N N N N 133.149 115.689 159.856 9.434 -1.053 -0.680 H42 84Q 85
84Q H43 H43 H 0 1 N N N N N N 132.112 114.259 159.531 9.725 -0.986 1.074 H43 84Q 86
84Q H44 H44 H 0 1 N N N N N N 131.610 114.915 157.464 9.959 -3.454 1.130 H44 84Q 87
84Q H45 H45 H 0 1 N N N N N N 133.275 115.499 157.124 9.668 -3.521 -0.624 H45 84Q 88
84Q H46 H46 H 0 1 N N N N N N 132.827 117.595 157.732 11.672 -2.113 -1.011 H46 84Q 89
84Q H47 H47 H 0 1 N N N N N N 131.503 117.118 158.849 11.963 -2.046 0.743 H47 84Q 90
84Q H48 H48 H 0 1 N N N N N N 129.889 117.227 157.223 12.197 -4.514 0.800 H48 84Q 91
84Q H49 H49 H 0 1 N N N N N N 131.005 116.713 155.913 11.906 -4.581 -0.955 H49 84Q 92
84Q H50 H50 H 0 1 N N N N N N 131.986 119.017 155.949 13.910 -3.173 -1.342 H50 84Q 93
84Q H51 H51 H 0 1 N N N N N N 128.999 119.178 155.457 14.435 -5.573 0.469 H51 84Q 94
84Q H52 H52 H 0 1 N N N N N N 131.319 120.742 154.528 16.418 -4.093 0.034 H52 84Q 95
84Q H53 H53 H 0 1 N N N N N N 129.882 121.645 156.253 17.865 -5.896 -0.863 H53 84Q 96
84Q H54 H54 H 0 1 N N N N N N 130.258 122.679 154.833 16.686 -6.543 0.302 H54 84Q 97
84Q H55 H55 H 0 1 N N N N N N 128.648 121.896 154.973 16.423 -6.763 -1.445 H55 84Q 98
84Q H56 H56 H 0 1 N N N N N N 134.251 107.274 158.086 -1.282 3.681 2.073 H56 84Q 99
84Q H57 H57 H 0 1 N N N N N N 134.391 105.758 157.133 -0.783 2.261 3.024 H57 84Q 100
84Q H58 H58 H 0 1 N N N N N N 131.017 108.873 155.937 -3.668 1.129 -0.481 H58 84Q 101
84Q H59 H59 H 0 1 N N N N N N 131.579 108.524 157.607 -3.169 -0.290 0.470 H59 84Q 102
84Q H60 H60 H 0 1 N N N N N N 132.903 110.819 157.138 -5.503 1.562 1.129 H60 84Q 103
84Q H61 H61 H 0 1 N N N N N N 131.268 110.725 157.876 -5.004 0.143 2.080 H61 84Q 104
84Q H62 H62 H 0 1 N N N N N N 130.589 112.941 157.011 -7.255 -0.884 1.730 H62 84Q 105
84Q H63 H63 H 0 1 N N N N N N 129.367 111.718 156.523 -7.754 0.535 0.778 H63 84Q 106
84Q H64 H64 H 0 1 N N N N N N 129.651 112.364 154.286 -7.669 -2.345 -0.231 H64 84Q 107
84Q H65 H65 H 0 1 N N N N N N 130.815 113.624 154.817 -8.169 -0.925 -1.182 H65 84Q 108
84Q H67 H67 H 0 1 N N N N N N 135.911 110.752 161.194 5.249 1.134 1.736 H67 84Q 109
84Q H20 H20 H 0 1 N N N N N N 130.699 119.487 157.111 14.201 -3.105 0.413 H20 84Q 110
84Q H66 H66 H 0 1 N N N N N N 130.181 118.480 154.299 14.144 -5.641 -1.286 H66 84Q 111
84Q H68 H68 H 0 1 N N N N N N 133.751 110.923 159.849 5.483 -1.334 1.792 H68 84Q 112
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
84Q C C1 SING N N 1
84Q C1 C2 SING N N 2
84Q C1 C3 SING N N 3
84Q N C33 SING N N 4
84Q C3 C4 SING N N 5
84Q C33 C32 SING N N 6
84Q C4 C5 SING N N 7
84Q C32 O7 SING N N 8
84Q C31 C29 SING N N 9
84Q C5 C6 SING N N 10
84Q O6 P DOUB N N 11
84Q O7 P SING N N 12
84Q C6 C7 SING N N 13
84Q C29 C28 SING N N 14
84Q C29 C30 SING N N 15
84Q C7 C8 SING N N 16
84Q P O5 SING N N 17
84Q P O4 SING N N 18
84Q C28 C27 SING N N 19
84Q C9 C8 SING N N 20
84Q C9 C10 SING N N 21
84Q O C14 DOUB N N 22
84Q C11 C10 SING N N 23
84Q C11 C12 SING N N 24
84Q C14 O1 SING N N 25
84Q C14 C13 SING N N 26
84Q O4 C16 SING N N 27
84Q C27 C26 SING N N 28
84Q O1 C15 SING N N 29
84Q C13 C12 SING N N 30
84Q C26 C25 SING N N 31
84Q C16 C15 SING N N 32
84Q C16 O2 SING N N 33
84Q C24 C25 SING N N 34
84Q C24 C23 SING N N 35
84Q O2 C17 SING N N 36
84Q O3 C17 DOUB N N 37
84Q C17 C18 SING N N 38
84Q C22 C23 SING N N 39
84Q C22 C21 SING N N 40
84Q C20 C19 SING N N 41
84Q C20 C21 SING N N 42
84Q C18 C19 SING N N 43
84Q C11 H1 SING N N 44
84Q C11 H2 SING N N 45
84Q C21 H3 SING N N 46
84Q C21 H4 SING N N 47
84Q C31 H5 SING N N 48
84Q C31 H6 SING N N 49
84Q C31 H7 SING N N 50
84Q C4 H8 SING N N 51
84Q C4 H9 SING N N 52
84Q C5 H10 SING N N 53
84Q C5 H11 SING N N 54
84Q C6 H12 SING N N 55
84Q C6 H13 SING N N 56
84Q C7 H14 SING N N 57
84Q C7 H15 SING N N 58
84Q C8 H16 SING N N 59
84Q C8 H17 SING N N 60
84Q N H18 SING N N 61
84Q N H19 SING N N 62
84Q C H21 SING N N 63
84Q C H22 SING N N 64
84Q C H23 SING N N 65
84Q C1 H24 SING N N 66
84Q C2 H25 SING N N 67
84Q C2 H26 SING N N 68
84Q C2 H27 SING N N 69
84Q C3 H28 SING N N 70
84Q C3 H29 SING N N 71
84Q O5 H30 SING N N 72
84Q C32 H31 SING N N 73
84Q C32 H32 SING N N 74
84Q C33 H33 SING N N 75
84Q C33 H34 SING N N 76
84Q C16 H35 SING N N 77
84Q C18 H36 SING N N 78
84Q C18 H37 SING N N 79
84Q C19 H38 SING N N 80
84Q C20 H39 SING N N 81
84Q C22 H40 SING N N 82
84Q C22 H41 SING N N 83
84Q C23 H42 SING N N 84
84Q C23 H43 SING N N 85
84Q C24 H44 SING N N 86
84Q C24 H45 SING N N 87
84Q C25 H46 SING N N 88
84Q C25 H47 SING N N 89
84Q C26 H48 SING N N 90
84Q C26 H49 SING N N 91
84Q C27 H50 SING N N 92
84Q C28 H51 SING N N 93
84Q C29 H52 SING N N 94
84Q C30 H53 SING N N 95
84Q C30 H54 SING N N 96
84Q C30 H55 SING N N 97
84Q C15 H56 SING N N 98
84Q C15 H57 SING N N 99
84Q C13 H58 SING N N 100
84Q C13 H59 SING N N 101
84Q C12 H60 SING N N 102
84Q C12 H61 SING N N 103
84Q C10 H62 SING N N 104
84Q C10 H63 SING N N 105
84Q C9 H64 SING N N 106
84Q C9 H65 SING N N 107
84Q C19 H67 SING N N 108
84Q C27 H20 SING N N 109
84Q C28 H66 SING N N 110
84Q C20 H68 SING N N 111
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
84Q InChI InChI 1.03 InChI=1S/C34H68NO8P/c1-30(2)23-19-15-11-7-5-9-13-17-21-25-32(36)40-29-34(43-44(38,39)41-28-27-35)42-33(37)26-22-18-14-10-6-8-12-16-20-24-31(3)4/h30-31,34H,5-29,35H2,1-4H3,(H,38,39)/t34-/m0/s1
84Q InChIKey InChI 1.03 TWGQVFCVUIINRS-UMSFTDKQSA-N
84Q SMILES_CANONICAL CACTVS 3.385 CC(C)CCCCCCCCCCCC(=O)OC[C@@H](OC(=O)CCCCCCCCCCCC(C)C)O[P](O)(=O)OCCN
84Q SMILES CACTVS 3.385 CC(C)CCCCCCCCCCCC(=O)OC[CH](OC(=O)CCCCCCCCCCCC(C)C)O[P](O)(=O)OCCN
84Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)CCCCCCCCCCCC(=O)OC[C@@H](OC(=O)CCCCCCCCCCCC(C)C)OP(=O)(O)OCCN
84Q SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CCCCCCCCCCCC(=O)OCC(OC(=O)CCCCCCCCCCCC(C)C)OP(=O)(O)OCCN
#
_pdbx_chem_comp_identifier.comp_id 84Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[(2~{S})-2-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-(13-methyltetradecanoyloxy)ethyl] 13-methyltetradecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
84Q 'Create component' 2021-11-25 PDBJ
84Q 'Initial release' 2022-12-28 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 84Q
_pdbx_chem_comp_synonyms.name 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 84Q
_pdbe_chem_comp_synonyms.name 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
84Q C11 C 15.497 1.198 1
84Q C21 C 19.394 7.948 2
84Q C31 C 31.085 8.698 3
84Q C4 C 19.394 -7.052 4
84Q C5 C 19.394 -5.552 5
84Q C6 C 18.095 -4.802 6
84Q C7 C 18.095 -3.302 7
84Q C8 C 16.796 -2.552 8
84Q N N 3.805 7.948 9
84Q C C 21.992 -10.052 10
84Q O O 11.600 3.448 11
84Q C1 C 20.693 -9.302 12
84Q O1 O 12.899 5.698 13
84Q C2 C 19.394 -10.052 14
84Q O2 O 12.899 8.698 15
84Q C3 C 20.693 -7.802 16
84Q O3 O 14.198 6.448 17
84Q O6 O 8.252 9.247 18
84Q P P 9.002 7.948 19
84Q O5 O 9.752 6.649 20
84Q O7 O 7.702 7.198 21
84Q C32 C 6.404 7.948 22
84Q C33 C 5.104 7.198 23
84Q O4 O 10.301 8.698 24
84Q C16 C 11.600 7.948 25
84Q C17 C 14.198 7.948 26
84Q C18 C 15.497 8.698 27
84Q C19 C 16.796 7.948 28
84Q C20 C 18.095 8.698 29
84Q C22 C 20.693 8.698 30
84Q C23 C 21.992 7.948 31
84Q C24 C 23.291 8.698 32
84Q C25 C 24.590 7.948 33
84Q C26 C 25.889 8.698 34
84Q C27 C 27.188 7.948 35
84Q C28 C 28.487 8.698 36
84Q C29 C 29.786 7.948 37
84Q C30 C 29.786 6.448 38
84Q C15 C 11.600 6.448 39
84Q C14 C 12.899 4.198 40
84Q C13 C 14.198 3.448 41
84Q C12 C 14.198 1.948 42
84Q C10 C 15.497 -0.302 43
84Q C9 C 16.796 -1.052 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
84Q C C1 SINGLE NONE 1
84Q C1 C2 SINGLE NONE 2
84Q C1 C3 SINGLE NONE 3
84Q N C33 SINGLE NONE 4
84Q C3 C4 SINGLE NONE 5
84Q C33 C32 SINGLE NONE 6
84Q C4 C5 SINGLE NONE 7
84Q C32 O7 SINGLE NONE 8
84Q C31 C29 SINGLE NONE 9
84Q C5 C6 SINGLE NONE 10
84Q O6 P DOUBLE NONE 11
84Q O7 P SINGLE NONE 12
84Q C6 C7 SINGLE NONE 13
84Q C29 C28 SINGLE NONE 14
84Q C29 C30 SINGLE NONE 15
84Q C7 C8 SINGLE NONE 16
84Q P O5 SINGLE BEGINDASH 17
84Q P O4 SINGLE NONE 18
84Q C28 C27 SINGLE NONE 19
84Q C9 C8 SINGLE NONE 20
84Q C9 C10 SINGLE NONE 21
84Q O C14 DOUBLE NONE 22
84Q C11 C10 SINGLE NONE 23
84Q C11 C12 SINGLE NONE 24
84Q C14 O1 SINGLE NONE 25
84Q C14 C13 SINGLE NONE 26
84Q O4 C16 SINGLE NONE 27
84Q C27 C26 SINGLE NONE 28
84Q O1 C15 SINGLE NONE 29
84Q C13 C12 SINGLE NONE 30
84Q C26 C25 SINGLE NONE 31
84Q C16 C15 SINGLE BEGINDASH 32
84Q C16 O2 SINGLE NONE 33
84Q C24 C25 SINGLE NONE 34
84Q C24 C23 SINGLE NONE 35
84Q O2 C17 SINGLE NONE 36
84Q O3 C17 DOUBLE NONE 37
84Q C17 C18 SINGLE NONE 38
84Q C22 C23 SINGLE NONE 39
84Q C22 C21 SINGLE NONE 40
84Q C20 C19 SINGLE NONE 41
84Q C20 C21 SINGLE NONE 42
84Q C18 C19 SINGLE NONE 43
#
_pdbe_chem_comp_substructure.comp_id 84Q
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
84Q O5 F1 1
84Q P F1 1
84Q O6 F1 1
84Q O7 F1 1
84Q O4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 84Q
_pdbe_chem_comp_rdkit_properties.exactmw 649.468
_pdbe_chem_comp_rdkit_properties.amw 649.891
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 38
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 112
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.941
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 364.984
_pdbe_chem_comp_rdkit_properties.tpsa 134.380
_pdbe_chem_comp_rdkit_properties.CrippenClogP 9.385
_pdbe_chem_comp_rdkit_properties.CrippenMR 178.006
_pdbe_chem_comp_rdkit_properties.chi0v 22.055
_pdbe_chem_comp_rdkit_properties.chi1v 11.547
_pdbe_chem_comp_rdkit_properties.chi2v 3.219
_pdbe_chem_comp_rdkit_properties.chi3v 3.219
_pdbe_chem_comp_rdkit_properties.chi4v 1.735
_pdbe_chem_comp_rdkit_properties.chi0n 89.160
_pdbe_chem_comp_rdkit_properties.chi1n 43.890
_pdbe_chem_comp_rdkit_properties.chi2n 2.514
_pdbe_chem_comp_rdkit_properties.chi3n 2.514
_pdbe_chem_comp_rdkit_properties.chi4n 1.267
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 6.272
_pdbe_chem_comp_rdkit_properties.kappa2 29.415
_pdbe_chem_comp_rdkit_properties.kappa3 31.011
_pdbe_chem_comp_rdkit_properties.Phi 4.193
#
_pdbe_chem_comp_external_mappings.comp_id 84Q
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 166175719
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
84Q C11 5.064 -1.787 -0.787 ETKDGv3 1
84Q C21 -6.525 1.215 -0.176 ETKDGv3 2
84Q C31 -10.892 3.772 3.948 ETKDGv3 3
84Q C4 10.072 2.352 0.083 ETKDGv3 4
84Q C5 8.930 1.326 0.157 ETKDGv3 5
84Q C6 9.135 0.297 1.283 ETKDGv3 6
84Q C7 8.140 -0.871 1.200 ETKDGv3 7
84Q C8 6.695 -0.438 1.504 ETKDGv3 8
84Q N 2.111 -4.030 1.392 ETKDGv3 9
84Q C 10.877 5.494 2.256 ETKDGv3 10
84Q O 3.250 0.077 -3.276 ETKDGv3 11
84Q C1 11.057 4.490 1.110 ETKDGv3 12
84Q O1 1.894 -1.713 -2.730 ETKDGv3 13
84Q C2 12.527 4.050 1.028 ETKDGv3 14
84Q O2 -1.666 -1.014 -2.389 ETKDGv3 15
84Q C3 10.106 3.287 1.305 ETKDGv3 16
84Q O3 -3.029 -2.461 -1.205 ETKDGv3 17
84Q O6 -1.492 -4.843 -1.660 ETKDGv3 18
84Q P -0.241 -4.371 -2.367 ETKDGv3 19
84Q O5 0.204 -5.523 -3.523 ETKDGv3 20
84Q O7 1.042 -4.171 -1.255 ETKDGv3 21
84Q C32 1.113 -5.321 -0.444 ETKDGv3 22
84Q C33 2.284 -5.195 0.528 ETKDGv3 23
84Q O4 -0.581 -2.900 -3.171 ETKDGv3 24
84Q C16 -0.486 -1.806 -2.276 ETKDGv3 25
84Q C17 -2.908 -1.400 -1.876 ETKDGv3 26
84Q C18 -4.092 -0.510 -2.075 ETKDGv3 27
84Q C19 -4.158 0.547 -0.965 ETKDGv3 28
84Q C20 -5.355 1.506 -1.135 ETKDGv3 29
84Q C22 -7.235 -0.133 -0.406 ETKDGv3 30
84Q C23 -7.935 -0.273 -1.772 ETKDGv3 31
84Q C24 -9.094 0.713 -2.014 ETKDGv3 32
84Q C25 -10.301 0.496 -1.077 ETKDGv3 33
84Q C26 -10.363 1.539 0.048 ETKDGv3 34
84Q C27 -11.546 1.267 0.989 ETKDGv3 35
84Q C28 -11.756 2.382 2.030 ETKDGv3 36
84Q C29 -10.563 2.621 2.989 ETKDGv3 37
84Q C30 -10.200 1.362 3.790 ETKDGv3 38
84Q C15 0.702 -0.936 -2.680 ETKDGv3 39
84Q C14 3.132 -1.162 -3.075 ETKDGv3 40
84Q C13 4.328 -2.054 -3.214 ETKDGv3 41
84Q C12 4.669 -2.768 -1.901 ETKDGv3 42
84Q C10 5.599 -2.535 0.443 ETKDGv3 43
84Q C9 5.739 -1.631 1.681 ETKDGv3 44
84Q H1 4.174 -1.185 -0.497 ETKDGv3 45
84Q H2 5.850 -1.100 -1.169 ETKDGv3 46
84Q H3 -6.143 1.234 0.868 ETKDGv3 47
84Q H4 -7.258 2.044 -0.249 ETKDGv3 48
84Q H5 -11.767 3.516 4.584 ETKDGv3 49
84Q H6 -10.022 3.987 4.605 ETKDGv3 50
84Q H7 -11.124 4.696 3.376 ETKDGv3 51
84Q H8 9.925 2.960 -0.837 ETKDGv3 52
84Q H9 11.039 1.814 -0.017 ETKDGv3 53
84Q H10 8.884 0.793 -0.818 ETKDGv3 54
84Q H11 7.965 1.859 0.296 ETKDGv3 55
84Q H12 9.041 0.790 2.275 ETKDGv3 56
84Q H13 10.162 -0.122 1.210 ETKDGv3 57
84Q H14 8.450 -1.641 1.940 ETKDGv3 58
84Q H15 8.199 -1.329 0.189 ETKDGv3 59
84Q H16 6.316 0.229 0.703 ETKDGv3 60
84Q H17 6.684 0.146 2.450 ETKDGv3 61
84Q H18 2.292 -3.169 0.826 ETKDGv3 62
84Q H19 2.858 -4.063 2.123 ETKDGv3 63
84Q H21 11.128 5.024 3.231 ETKDGv3 64
84Q H22 11.534 6.376 2.102 ETKDGv3 65
84Q H23 9.826 5.853 2.291 ETKDGv3 66
84Q H24 10.793 5.010 0.162 ETKDGv3 67
84Q H25 12.702 3.437 0.120 ETKDGv3 68
84Q H26 13.191 4.938 0.961 ETKDGv3 69
84Q H27 12.811 3.460 1.926 ETKDGv3 70
84Q H28 10.414 2.716 2.207 ETKDGv3 71
84Q H29 9.077 3.673 1.482 ETKDGv3 72
84Q H30 1.039 -5.169 -3.920 ETKDGv3 73
84Q H31 0.182 -5.441 0.155 ETKDGv3 74
84Q H32 1.277 -6.232 -1.063 ETKDGv3 75
84Q H33 3.239 -5.120 -0.035 ETKDGv3 76
84Q H34 2.326 -6.113 1.154 ETKDGv3 77
84Q H35 -0.359 -2.085 -1.203 ETKDGv3 78
84Q H36 -5.014 -1.127 -2.084 ETKDGv3 79
84Q H37 -4.004 -0.010 -3.063 ETKDGv3 80
84Q H38 -3.220 1.145 -1.001 ETKDGv3 81
84Q H39 -5.708 1.540 -2.187 ETKDGv3 82
84Q H40 -7.978 -0.292 0.403 ETKDGv3 83
84Q H41 -6.500 -0.957 -0.294 ETKDGv3 84
84Q H42 -7.193 -0.157 -2.588 ETKDGv3 85
84Q H43 -8.326 -1.310 -1.859 ETKDGv3 86
84Q H44 -9.441 0.550 -3.058 ETKDGv3 87
84Q H45 -8.733 1.762 -1.980 ETKDGv3 88
84Q H46 -11.234 0.580 -1.678 ETKDGv3 89
84Q H47 -10.285 -0.529 -0.645 ETKDGv3 90
84Q H48 -9.422 1.507 0.630 ETKDGv3 91
84Q H49 -10.469 2.553 -0.398 ETKDGv3 92
84Q H50 -11.412 0.288 1.495 ETKDGv3 93
84Q H51 -12.659 2.129 2.629 ETKDGv3 94
84Q H52 -9.674 2.934 2.401 ETKDGv3 95
84Q H53 -9.787 0.580 3.121 ETKDGv3 96
84Q H54 -9.417 1.597 4.542 ETKDGv3 97
84Q H55 -11.093 0.961 4.316 ETKDGv3 98
84Q H56 0.823 -0.113 -1.941 ETKDGv3 99
84Q H57 0.511 -0.492 -3.682 ETKDGv3 100
84Q H58 4.107 -2.817 -3.990 ETKDGv3 101
84Q H59 5.207 -1.467 -3.560 ETKDGv3 102
84Q H60 3.799 -3.375 -1.575 ETKDGv3 103
84Q H61 5.516 -3.462 -2.095 ETKDGv3 104
84Q H62 4.898 -3.354 0.705 ETKDGv3 105
84Q H63 6.573 -3.010 0.202 ETKDGv3 106
84Q H64 4.735 -1.242 1.956 ETKDGv3 107
84Q H65 6.090 -2.251 2.535 ETKDGv3 108
84Q H67 -4.187 0.051 0.031 ETKDGv3 109
84Q H20 -12.476 1.194 0.383 ETKDGv3 110
84Q H66 -11.981 3.327 1.488 ETKDGv3 111
84Q H68 -5.001 2.535 -0.906 ETKDGv3 112
#