data_852
#
_chem_comp.id 852
_chem_comp.name
"2-{4-[2-ACETYLAMINO-2-(1-BIPHENYL-4-YLMETHYL-2-OXO-AZEPAN-3-YLCARBAMOYL)-ETHYL]-2-CARBOXY-PHENYL}-MALONIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H35 N3 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms RU85052
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-20
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 629.656
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 852
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1O44
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
852 C1 C1 C 0 1 Y N N N N N 19.238 25.641 20.078 -0.685 0.052 -1.412 C1 852 1
852 C2 C2 C 0 1 Y N N N N N 17.893 25.338 19.792 0.184 0.859 -2.124 C2 852 2
852 C3 C3 C 0 1 Y N N N N N 17.174 26.197 18.959 0.333 0.690 -3.489 C3 852 3
852 C4 C4 C 0 1 Y N N N N N 17.780 27.379 18.501 -0.384 -0.284 -4.150 C4 852 4
852 C5 C5 C 0 1 Y N N N N N 19.147 27.735 18.842 -1.263 -1.102 -3.438 C5 852 5
852 C6 C6 C 0 1 Y N N N N N 19.908 26.810 19.598 -1.406 -0.929 -2.059 C6 852 6
852 C7 C7 C 0 1 N N N N N N 20.013 24.763 21.007 -0.841 0.243 0.074 C7 852 7
852 C8 C8 C 0 1 N N S N N N 19.682 25.231 22.418 -1.960 1.251 0.344 C8 852 8
852 C9 C9 C 0 1 N N N N N N 20.439 24.317 23.395 -2.116 1.442 1.830 C9 852 9
852 N10 N10 N 0 1 N N N N N N 19.687 23.240 23.751 -2.963 0.657 2.525 N10 852 10
852 O11 O11 O 0 1 N N N N N N 21.605 24.551 23.776 -1.479 2.302 2.401 O11 852 11
852 N12 N12 N 0 1 N N N N N N 20.128 26.603 22.604 -1.623 2.533 -0.280 N12 852 12
852 C13 C13 C 0 1 N N N N N N 19.327 27.501 23.164 -0.501 3.185 0.083 C13 852 13
852 O14 O14 O 0 1 N N N N N N 18.231 27.244 23.643 0.228 2.712 0.928 O14 852 14
852 C15 C15 C 0 1 N N N N N N 19.866 28.937 23.053 -0.155 4.504 -0.558 C15 852 15
852 C16 C16 C 0 1 N N S N N N 20.277 22.246 24.606 -3.115 0.843 3.970 C16 852 16
852 C17 C17 C 0 1 N N N N N N 21.342 21.486 23.786 -1.930 0.232 4.689 C17 852 17
852 N18 N18 N 0 1 N N N N N N 22.152 20.667 24.557 -1.534 -1.009 4.389 N18 852 18
852 O19 O19 O 0 1 N N N N N N 21.401 21.620 22.546 -1.343 0.864 5.541 O19 852 19
852 C20 C20 C 0 1 N N N N N N 21.998 20.479 26.008 -2.234 -1.786 3.353 C20 852 20
852 C21 C21 C 0 1 N N N N N N 20.735 19.659 26.195 -3.600 -2.208 3.897 C21 852 21
852 C22 C22 C 0 1 N N N N N N 23.131 19.821 23.785 -0.393 -1.598 5.095 C22 852 22
852 C23 C23 C 0 1 Y N N N N N 22.526 18.486 23.353 0.876 -1.277 4.351 C23 852 23
852 C24 C24 C 0 1 N N N N N N 19.523 20.542 26.341 -4.636 -1.126 3.655 C24 852 24
852 C25 C25 C 0 1 N N N N N N 19.181 21.293 25.063 -4.390 0.144 4.448 C25 852 25
852 C26 C26 C 0 1 Y N N N N N 21.344 18.432 22.519 1.339 -2.139 3.373 C26 852 26
852 C27 C27 C 0 1 Y N N N N N 20.705 17.190 22.262 2.499 -1.848 2.685 C27 852 27
852 C28 C28 C 0 1 Y N N N N N 21.310 16.044 22.851 3.211 -0.688 2.985 C28 852 28
852 C29 C29 C 0 1 Y N N N N N 22.475 16.061 23.640 2.744 0.173 3.975 C29 852 29
852 C30 C30 C 0 1 Y N N N N N 23.084 17.298 23.902 1.579 -0.124 4.653 C30 852 30
852 C31 C31 C 0 1 Y N N N N N 20.649 14.726 22.615 4.463 -0.372 2.253 C31 852 31
852 C32 C32 C 0 1 Y N N N N N 21.456 13.542 22.467 4.737 0.938 1.870 C32 852 32
852 C33 C33 C 0 1 Y N N N N N 20.799 12.311 22.136 5.905 1.227 1.195 C33 852 33
852 C34 C34 C 0 1 Y N N N N N 19.413 12.283 21.975 6.797 0.216 0.886 C34 852 34
852 C35 C35 C 0 1 Y N N N N N 18.616 13.423 22.137 6.527 -1.088 1.258 C35 852 35
852 C36 C36 C 0 1 Y N N N N N 19.225 14.658 22.480 5.365 -1.387 1.940 C36 852 36
852 C37 C37 C 0 1 N N N N N N 19.835 29.042 18.452 -2.036 -2.148 -4.138 C37 852 37
852 O38 O38 O 0 1 N N N N N N 19.534 30.212 19.105 -2.229 -3.347 -3.556 O38 852 38
852 O39 O39 O 0 1 N N N N N N 20.626 29.043 17.573 -2.498 -1.927 -5.240 O39 852 39
852 C40 C40 C 0 1 N N N N N N 16.905 28.234 17.628 -0.220 -0.466 -5.637 C40 852 40
852 C41 C41 C 0 1 N N N N N N 17.230 28.495 16.158 1.237 -0.672 -5.960 C41 852 41
852 O42 O42 O 0 1 N N N N N N 17.365 27.356 15.519 1.623 -0.856 -7.232 O42 852 42
852 O43 O43 O 0 1 N N N N N N 17.420 29.555 15.668 2.058 -0.670 -5.073 O43 852 43
852 C76 C76 C 0 1 N N N N N N 15.471 28.571 17.994 -0.725 0.759 -6.352 C76 852 44
852 O78 O78 O 0 1 N N N N N N 14.769 28.732 17.067 -0.678 0.822 -7.692 O78 852 45
852 O79 O79 O 0 1 N N N N N N 15.196 28.844 19.245 -1.172 1.686 -5.720 O79 852 46
852 H2 H2 H 0 1 N N N N N N 17.409 24.440 20.214 0.749 1.623 -1.612 H2 852 47
852 H3 H3 H 0 1 N N N N N N 16.140 25.945 18.666 1.014 1.324 -4.039 H3 852 48
852 H6 H6 H 0 1 N N N N N N 20.976 26.992 19.804 -2.084 -1.559 -1.502 H6 852 49
852 H71 1H7 H 0 1 N N N N N N 19.825 23.675 20.846 0.092 0.616 0.492 H71 852 50
852 H72 2H7 H 0 1 N N N N N N 21.106 24.748 20.791 -1.092 -0.710 0.538 H72 852 51
852 H8 H8 H 0 1 N N N N N N 18.582 25.186 22.594 -2.894 0.878 -0.074 H8 852 52
852 H10 H10 H 0 1 N N N N N N 18.732 23.181 23.396 -3.472 -0.030 2.068 H10 852 53
852 H12 H12 H 0 1 N N N N N N 21.046 26.952 22.328 -2.207 2.912 -0.955 H12 852 54
852 H151 1H15 H 0 0 N N N N N N 19.193 29.691 23.523 0.779 4.877 -0.139 H151 852 55
852 H152 2H15 H 0 0 N N N N N N 20.897 29.008 23.469 -0.042 4.366 -1.633 H152 852 56
852 H153 3H15 H 0 0 N N N N N N 20.080 29.201 21.991 -0.951 5.222 -0.365 H153 852 57
852 H16 H16 H 0 1 N N N N N N 20.754 22.708 25.501 -3.172 1.907 4.199 H16 852 58
852 H201 1H20 H 0 0 N N N N N N 22.894 20.030 26.495 -1.650 -2.672 3.104 H201 852 59
852 H202 2H20 H 0 0 N N N N N N 21.995 21.435 26.581 -2.368 -1.172 2.463 H202 852 60
852 H211 1H21 H 0 0 N N N N N N 20.603 18.917 25.372 -3.518 -2.394 4.968 H211 852 61
852 H212 2H21 H 0 0 N N N N N N 20.830 18.951 27.051 -3.916 -3.125 3.398 H212 852 62
852 H221 1H22 H 0 0 N N N N N N 23.544 20.377 22.911 -0.519 -2.679 5.150 H221 852 63
852 H222 2H22 H 0 0 N N N N N N 24.073 19.669 24.360 -0.338 -1.186 6.103 H222 852 64
852 H241 1H24 H 0 0 N N N N N N 18.646 19.958 26.707 -5.618 -1.518 3.922 H241 852 65
852 H242 2H24 H 0 0 N N N N N N 19.643 21.246 27.197 -4.640 -0.879 2.593 H242 852 66
852 H251 1H25 H 0 0 N N N N N N 18.209 21.830 25.169 -4.289 -0.104 5.504 H251 852 67
852 H252 2H25 H 0 0 N N N N N N 18.911 20.581 24.247 -5.238 0.818 4.318 H252 852 68
852 H26 H26 H 0 1 N N N N N N 20.924 19.349 22.073 0.786 -3.037 3.141 H26 852 69
852 H27 H27 H 0 1 N N N N N N 19.794 17.119 21.643 2.857 -2.519 1.919 H27 852 70
852 H29 H29 H 0 1 N N N N N N 22.900 15.126 24.043 3.292 1.073 4.211 H29 852 71
852 H30 H30 H 0 1 N N N N N N 23.989 17.336 24.531 1.216 0.542 5.420 H30 852 72
852 H32 H32 H 0 1 N N N N N N 22.549 13.577 22.603 4.041 1.728 2.110 H32 852 73
852 H33 H33 H 0 1 N N N N N N 21.366 11.374 22.003 6.122 2.244 0.902 H33 852 74
852 H34 H34 H 0 1 N N N N N N 18.930 11.326 21.710 7.708 0.446 0.354 H34 852 75
852 H35 H35 H 0 1 N N N N N N 17.524 13.349 21.996 7.227 -1.874 1.015 H35 852 76
852 H36 H36 H 0 1 N N N N N N 18.600 15.552 22.639 5.155 -2.406 2.230 H36 852 77
852 H38 H38 H 0 1 N N N N N N 19.961 31.024 18.862 -2.735 -4.032 -4.014 H38 852 78
852 H40 H40 H 0 1 N N N N N N 17.523 28.960 18.205 -0.790 -1.337 -5.961 H40 852 79
852 H42 H42 H 0 1 N N N N N N 17.567 27.518 14.605 2.558 -0.988 -7.439 H42 852 80
852 H78 H78 H 0 1 N N N N N N 13.871 28.942 17.296 -1.002 1.609 -8.151 H78 852 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
852 C1 C2 DOUB Y N 1
852 C1 C6 SING Y N 2
852 C1 C7 SING N N 3
852 C2 C3 SING Y N 4
852 C2 H2 SING N N 5
852 C3 C4 DOUB Y N 6
852 C3 H3 SING N N 7
852 C4 C5 SING Y N 8
852 C4 C40 SING N N 9
852 C5 C6 DOUB Y N 10
852 C5 C37 SING N N 11
852 C6 H6 SING N N 12
852 C7 C8 SING N N 13
852 C7 H71 SING N N 14
852 C7 H72 SING N N 15
852 C8 C9 SING N N 16
852 C8 N12 SING N N 17
852 C8 H8 SING N N 18
852 C9 N10 SING N N 19
852 C9 O11 DOUB N N 20
852 N10 C16 SING N N 21
852 N10 H10 SING N N 22
852 N12 C13 SING N N 23
852 N12 H12 SING N N 24
852 C13 O14 DOUB N N 25
852 C13 C15 SING N N 26
852 C15 H151 SING N N 27
852 C15 H152 SING N N 28
852 C15 H153 SING N N 29
852 C16 C17 SING N N 30
852 C16 C25 SING N N 31
852 C16 H16 SING N N 32
852 C17 N18 SING N N 33
852 C17 O19 DOUB N N 34
852 N18 C20 SING N N 35
852 N18 C22 SING N N 36
852 C20 C21 SING N N 37
852 C20 H201 SING N N 38
852 C20 H202 SING N N 39
852 C21 C24 SING N N 40
852 C21 H211 SING N N 41
852 C21 H212 SING N N 42
852 C22 C23 SING N N 43
852 C22 H221 SING N N 44
852 C22 H222 SING N N 45
852 C23 C26 SING Y N 46
852 C23 C30 DOUB Y N 47
852 C24 C25 SING N N 48
852 C24 H241 SING N N 49
852 C24 H242 SING N N 50
852 C25 H251 SING N N 51
852 C25 H252 SING N N 52
852 C26 C27 DOUB Y N 53
852 C26 H26 SING N N 54
852 C27 C28 SING Y N 55
852 C27 H27 SING N N 56
852 C28 C29 DOUB Y N 57
852 C28 C31 SING Y N 58
852 C29 C30 SING Y N 59
852 C29 H29 SING N N 60
852 C30 H30 SING N N 61
852 C31 C32 SING Y N 62
852 C31 C36 DOUB Y N 63
852 C32 C33 DOUB Y N 64
852 C32 H32 SING N N 65
852 C33 C34 SING Y N 66
852 C33 H33 SING N N 67
852 C34 C35 DOUB Y N 68
852 C34 H34 SING N N 69
852 C35 C36 SING Y N 70
852 C35 H35 SING N N 71
852 C36 H36 SING N N 72
852 C37 O38 SING N N 73
852 C37 O39 DOUB N N 74
852 O38 H38 SING N N 75
852 C40 C41 SING N N 76
852 C40 C76 SING N N 77
852 C40 H40 SING N N 78
852 C41 O42 SING N N 79
852 C41 O43 DOUB N N 80
852 O42 H42 SING N N 81
852 C76 O78 SING N N 82
852 C76 O79 DOUB N N 83
852 O78 H78 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
852 SMILES ACDLabs 10.04 O=C(O)C(C(=O)O)c1c(C(=O)O)cc(cc1)CC(NC(=O)C)C(=O)NC4C(=O)N(Cc3ccc(c2ccccc2)cc3)CCCC4
852 SMILES_CANONICAL CACTVS 3.341 CC(=O)N[C@@H](Cc1ccc(C(C(O)=O)C(O)=O)c(c1)C(O)=O)C(=O)N[C@H]2CCCCN(Cc3ccc(cc3)c4ccccc4)C2=O
852 SMILES CACTVS 3.341 CC(=O)N[CH](Cc1ccc(C(C(O)=O)C(O)=O)c(c1)C(O)=O)C(=O)N[CH]2CCCCN(Cc3ccc(cc3)c4ccccc4)C2=O
852 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)N[C@@H](Cc1ccc(c(c1)C(=O)O)C(C(=O)O)C(=O)O)C(=O)N[C@H]2CCCCN(C2=O)Cc3ccc(cc3)c4ccccc4
852 SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)NC(Cc1ccc(c(c1)C(=O)O)C(C(=O)O)C(=O)O)C(=O)NC2CCCCN(C2=O)Cc3ccc(cc3)c4ccccc4
852 InChI InChI 1.03 InChI=1S/C34H35N3O9/c1-20(38)35-28(18-22-12-15-25(26(17-22)32(41)42)29(33(43)44)34(45)46)30(39)36-27-9-5-6-16-37(31(27)40)19-21-10-13-24(14-11-21)23-7-3-2-4-8-23/h2-4,7-8,10-15,17,27-29H,5-6,9,16,18-19H2,1H3,(H,35,38)(H,36,39)(H,41,42)(H,43,44)(H,45,46)/t27-,28-/m0/s1
852 InChIKey InChI 1.03 CGOGPQNYHFBUEF-NSOVKSMOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
852 "SYSTEMATIC NAME" ACDLabs 10.04 "{4-[(2S)-2-(acetylamino)-3-{[(3S)-1-(biphenyl-4-ylmethyl)-2-oxoazepan-3-yl]amino}-3-oxopropyl]-2-carboxyphenyl}propanedioic acid"
852 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[(2S)-2-acetamido-3-oxo-3-[[(3S)-2-oxo-1-[(4-phenylphenyl)methyl]azepan-3-yl]amino]propyl]-2-carboxy-phenyl]propanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
852 'Create component' 2003-06-20 RCSB
852 'Modify aromatic_flag' 2011-06-04 RCSB
852 'Modify descriptor' 2011-06-04 RCSB
852 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 852
_pdbx_chem_comp_synonyms.name RU85052
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 852
_pdbe_chem_comp_synonyms.name RU85052
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
852 C1 C 10.502 2.733 1
852 C2 C 10.060 4.167 2
852 C3 C 8.598 4.500 3
852 C4 C 7.578 3.401 4
852 C5 C 8.020 1.967 5
852 C6 C 9.482 1.633 6
852 C7 C 11.965 2.399 7
852 C8 C 12.985 3.499 8
852 C9 C 14.447 3.165 9
852 N10 N 14.890 1.732 10
852 O11 O 15.468 4.265 11
852 N12 N 12.543 4.932 12
852 C13 C 13.563 6.032 13
852 O14 O 15.025 5.698 14
852 C15 C 13.121 7.465 15
852 C16 C 16.352 1.398 16
852 C17 C 16.686 -0.064 17
852 N18 N 18.037 -0.715 18
852 O19 O 15.513 -1.000 19
852 C20 C 19.389 -0.064 20
852 C21 C 19.723 1.398 21
852 C22 C 18.037 -2.215 22
852 C23 C 19.336 -2.965 23
852 C24 C 18.787 2.571 24
852 C25 C 17.287 2.571 25
852 C26 C 19.336 -4.465 26
852 C27 C 20.635 -5.215 27
852 C28 C 21.934 -4.465 28
852 C29 C 21.934 -2.965 29
852 C30 C 20.635 -2.215 30
852 C31 C 23.233 -5.215 31
852 C32 C 23.233 -6.715 32
852 C33 C 24.532 -7.465 33
852 C34 C 25.831 -6.715 34
852 C35 C 25.831 -5.215 35
852 C36 C 24.532 -4.465 36
852 C37 C 7.945 0.469 37
852 O38 O 9.205 -0.344 38
852 O39 O 6.610 -0.215 39
852 C40 C 6.115 3.734 40
852 C41 C 5.673 5.168 41
852 O42 O 4.211 5.502 42
852 O43 O 6.693 6.268 43
852 C76 C 5.095 2.635 44
852 O78 O 3.633 2.969 45
852 O79 O 4.512 1.253 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
852 C1 C2 DOUBLE NONE 1
852 C1 C6 SINGLE NONE 2
852 C1 C7 SINGLE NONE 3
852 C2 C3 SINGLE NONE 4
852 C3 C4 DOUBLE NONE 5
852 C4 C5 SINGLE NONE 6
852 C4 C40 SINGLE NONE 7
852 C5 C6 DOUBLE NONE 8
852 C5 C37 SINGLE NONE 9
852 C8 C7 SINGLE BEGINDASH 10
852 C8 C9 SINGLE NONE 11
852 C8 N12 SINGLE NONE 12
852 C9 N10 SINGLE NONE 13
852 C9 O11 DOUBLE NONE 14
852 C16 N10 SINGLE BEGINWEDGE 15
852 N12 C13 SINGLE NONE 16
852 C13 O14 DOUBLE NONE 17
852 C13 C15 SINGLE NONE 18
852 C16 C17 SINGLE NONE 19
852 C16 C25 SINGLE NONE 20
852 C17 N18 SINGLE NONE 21
852 C17 O19 DOUBLE NONE 22
852 N18 C20 SINGLE NONE 23
852 N18 C22 SINGLE NONE 24
852 C20 C21 SINGLE NONE 25
852 C21 C24 SINGLE NONE 26
852 C22 C23 SINGLE NONE 27
852 C23 C26 DOUBLE NONE 28
852 C23 C30 SINGLE NONE 29
852 C24 C25 SINGLE NONE 30
852 C26 C27 SINGLE NONE 31
852 C27 C28 DOUBLE NONE 32
852 C28 C29 SINGLE NONE 33
852 C28 C31 SINGLE NONE 34
852 C29 C30 DOUBLE NONE 35
852 C31 C32 DOUBLE NONE 36
852 C31 C36 SINGLE NONE 37
852 C32 C33 SINGLE NONE 38
852 C33 C34 DOUBLE NONE 39
852 C34 C35 SINGLE NONE 40
852 C35 C36 DOUBLE NONE 41
852 C37 O38 SINGLE NONE 42
852 C37 O39 DOUBLE NONE 43
852 C40 C41 SINGLE NONE 44
852 C40 C76 SINGLE NONE 45
852 C41 O42 SINGLE NONE 46
852 C41 O43 DOUBLE NONE 47
852 C76 O78 SINGLE NONE 48
852 C76 O79 DOUBLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
852 MurckoScaffold S1 scaffold 'O=C(CCc1ccccc1)N[C@H]1CCCCN(Cc2ccc(-c3ccccc3)cc2)C1=O' InChI=1S/C28H30N2O2/c31-27(19-16-22-9-3-1-4-10-22)29-26-13-7-8-20-30(28(26)32)21-23-14-17-25(18-15-23)24-11-5-2-6-12-24/h1-6,9-12,14-15,17-18,26H,7-8,13,16,19-21H2,(H,29,31)/t26-/m0/s1 PWBPTRIMUSERAU-SANMLTNESA-N
852 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
852 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
852 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
852 C1 S1 1
852 C2 S1 1
852 C3 S1 1
852 C4 S1 1
852 C5 S1 1
852 C6 S1 1
852 C7 S1 1
852 C8 S1 1
852 C9 S1 1
852 N10 S1 1
852 O11 S1 1
852 C16 S1 1
852 C17 S1 1
852 N18 S1 1
852 O19 S1 1
852 C20 S1 1
852 C21 S1 1
852 C22 S1 1
852 C23 S1 1
852 C24 S1 1
852 C25 S1 1
852 C26 S1 1
852 C27 S1 1
852 C28 S1 1
852 C29 S1 1
852 C30 S1 1
852 C31 S1 1
852 C32 S1 1
852 C33 S1 1
852 C34 S1 1
852 C35 S1 1
852 C36 S1 1
852 N10 F1 1
852 C9 F1 1
852 O11 F1 1
852 C8 F1 1
852 N12 F1 2
852 C13 F1 2
852 O14 F1 2
852 C15 F1 2
852 N18 F1 3
852 C17 F1 3
852 O19 F1 3
852 C16 F1 3
852 O11 F2 1
852 C9 F2 1
852 C8 F2 1
852 N12 F2 1
852 O19 F2 2
852 C17 F2 2
852 C16 F2 2
852 N10 F2 2
852 C1 F3 1
852 C2 F3 1
852 C3 F3 1
852 C4 F3 1
852 C5 F3 1
852 C6 F3 1
852 C23 F3 2
852 C26 F3 2
852 C27 F3 2
852 C28 F3 2
852 C29 F3 2
852 C30 F3 2
852 C31 F3 3
852 C32 F3 3
852 C33 F3 3
852 C34 F3 3
852 C35 F3 3
852 C36 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 852
_pdbe_chem_comp_rdkit_properties.exactmw 629.237
_pdbe_chem_comp_rdkit_properties.amw 629.666
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 81
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.294
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 314.140
_pdbe_chem_comp_rdkit_properties.tpsa 190.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.450
_pdbe_chem_comp_rdkit_properties.CrippenMR 163.413
_pdbe_chem_comp_rdkit_properties.chi0v 22.016
_pdbe_chem_comp_rdkit_properties.chi1v 11.652
_pdbe_chem_comp_rdkit_properties.chi2v 4.963
_pdbe_chem_comp_rdkit_properties.chi3v 4.963
_pdbe_chem_comp_rdkit_properties.chi4v 3.120
_pdbe_chem_comp_rdkit_properties.chi0n 57.016
_pdbe_chem_comp_rdkit_properties.chi1n 28.772
_pdbe_chem_comp_rdkit_properties.chi2n 4.963
_pdbe_chem_comp_rdkit_properties.chi3n 4.963
_pdbe_chem_comp_rdkit_properties.chi4n 3.120
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.520
_pdbe_chem_comp_rdkit_properties.kappa1 10.244
_pdbe_chem_comp_rdkit_properties.kappa2 14.975
_pdbe_chem_comp_rdkit_properties.kappa3 8.346
_pdbe_chem_comp_rdkit_properties.Phi 3.335
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
852 UniChem ChEMBL CHEMBL421518
852 UniChem PDBe 852
852 UniChem ZINC ZINC000003979523
852 UniChem 'PubChem TPHARMA' 14789857
852 UniChem PubChem 447520
852 UniChem BindingDb 14690
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
852 C1 -2.969 1.806 1.040 ETKDGv3 1
852 C2 -2.462 0.581 1.231 ETKDGv3 2
852 C3 -3.306 -0.499 1.769 ETKDGv3 3
852 C4 -4.600 -0.282 2.089 ETKDGv3 4
852 C5 -5.195 1.069 1.793 ETKDGv3 5
852 C6 -4.398 2.053 1.337 ETKDGv3 6
852 C7 -2.119 2.913 0.461 ETKDGv3 7
852 C8 -2.221 3.010 -1.075 ETKDGv3 8
852 C9 -1.612 1.799 -1.742 ETKDGv3 9
852 N10 -0.222 1.804 -2.101 ETKDGv3 10
852 O11 -2.308 0.763 -1.929 ETKDGv3 11
852 N12 -3.614 3.207 -1.498 ETKDGv3 12
852 C13 -4.261 4.485 -1.429 ETKDGv3 13
852 O14 -3.614 5.513 -1.090 ETKDGv3 14
852 C15 -5.720 4.597 -1.729 ETKDGv3 15
852 C16 0.465 0.601 -2.584 ETKDGv3 16
852 C17 0.907 -0.249 -1.415 ETKDGv3 17
852 N18 1.344 -1.612 -1.601 ETKDGv3 18
852 O19 0.933 0.263 -0.261 ETKDGv3 19
852 C20 1.573 -2.153 -2.949 ETKDGv3 20
852 C21 2.668 -1.363 -3.684 ETKDGv3 21
852 C22 1.609 -2.458 -0.427 ETKDGv3 22
852 C23 2.990 -2.192 0.110 ETKDGv3 23
852 C24 2.127 -0.117 -4.400 ETKDGv3 24
852 C25 1.678 0.999 -3.445 ETKDGv3 25
852 C26 4.072 -2.690 -0.511 ETKDGv3 26
852 C27 5.428 -2.395 -0.005 ETKDGv3 27
852 C28 5.599 -1.623 1.085 ETKDGv3 28
852 C29 4.399 -1.070 1.768 ETKDGv3 29
852 C30 3.171 -1.340 1.308 ETKDGv3 30
852 C31 6.960 -1.323 1.597 ETKDGv3 31
852 C32 7.205 -1.287 2.922 ETKDGv3 32
852 C33 8.563 -0.992 3.425 ETKDGv3 33
852 C34 9.561 -0.757 2.566 ETKDGv3 34
852 C35 9.306 -0.788 1.113 ETKDGv3 35
852 C36 8.078 -1.055 0.652 ETKDGv3 36
852 C37 -6.643 1.353 1.935 ETKDGv3 37
852 O38 -7.071 2.634 2.273 ETKDGv3 38
852 O39 -7.499 0.459 1.701 ETKDGv3 39
852 C40 -5.423 -1.395 2.728 ETKDGv3 40
852 C41 -5.980 -2.321 1.681 ETKDGv3 41
852 O42 -7.316 -2.707 1.743 ETKDGv3 42
852 O43 -5.239 -2.779 0.769 ETKDGv3 43
852 C76 -4.648 -2.159 3.773 ETKDGv3 44
852 O78 -4.021 -3.362 3.457 ETKDGv3 45
852 O79 -4.530 -1.682 4.934 ETKDGv3 46
852 H2 -1.427 0.368 0.999 ETKDGv3 47
852 H3 -2.847 -1.467 1.925 ETKDGv3 48
852 H6 -4.806 3.034 1.123 ETKDGv3 49
852 H71 -1.054 2.772 0.752 ETKDGv3 50
852 H72 -2.435 3.881 0.906 ETKDGv3 51
852 H8 -1.628 3.894 -1.398 ETKDGv3 52
852 H10 0.350 2.648 -1.866 ETKDGv3 53
852 H12 -4.200 2.379 -1.749 ETKDGv3 54
852 H151 -6.032 5.662 -1.766 ETKDGv3 55
852 H152 -5.937 4.126 -2.710 ETKDGv3 56
852 H153 -6.300 4.077 -0.938 ETKDGv3 57
852 H16 -0.246 0.021 -3.213 ETKDGv3 58
852 H201 1.902 -3.213 -2.889 ETKDGv3 59
852 H202 0.623 -2.158 -3.526 ETKDGv3 60
852 H211 3.117 -2.027 -4.455 ETKDGv3 61
852 H212 3.482 -1.080 -2.981 ETKDGv3 62
852 H221 1.514 -3.535 -0.687 ETKDGv3 63
852 H222 0.841 -2.272 0.356 ETKDGv3 64
852 H241 1.291 -0.399 -5.077 ETKDGv3 65
852 H242 2.939 0.289 -5.042 ETKDGv3 66
852 H251 2.528 1.315 -2.800 ETKDGv3 67
852 H252 1.400 1.875 -4.071 ETKDGv3 68
852 H26 3.966 -3.310 -1.393 ETKDGv3 69
852 H27 6.276 -2.831 -0.518 ETKDGv3 70
852 H29 4.509 -0.430 2.634 ETKDGv3 71
852 H30 2.309 -0.926 1.817 ETKDGv3 72
852 H32 6.423 -1.495 3.640 ETKDGv3 73
852 H33 8.749 -0.970 4.491 ETKDGv3 74
852 H34 10.556 -0.542 2.934 ETKDGv3 75
852 H35 10.115 -0.588 0.421 ETKDGv3 76
852 H36 7.904 -1.055 -0.417 ETKDGv3 77
852 H38 -8.057 2.849 2.352 ETKDGv3 78
852 H40 -6.279 -0.946 3.273 ETKDGv3 79
852 H42 -7.707 -3.339 1.054 ETKDGv3 80
852 H78 -3.484 -3.867 4.152 ETKDGv3 81
#