data_867
#
_chem_comp.id 867
_chem_comp.name
"methyl 6-[4-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H38 N10 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-04
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 650.686
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 867
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PUQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
867 C1 C1 C 0 1 Y N N N N N 42.178 25.246 126.422 13.306 -1.164 -0.376 C1 867 1
867 C2 C2 C 0 1 Y N N N N N 43.289 25.217 125.578 13.351 0.218 -0.119 C2 867 2
867 C3 C3 C 0 1 Y N N N N N 44.564 25.232 126.096 12.218 0.907 0.190 C3 867 3
867 N1 N1 N 0 1 N N N N N N 47.534 25.329 130.052 7.427 0.917 0.937 N1 867 4
867 C5 C4 C 0 1 Y N N N N N 43.647 25.310 128.363 10.925 -1.162 -0.004 C5 867 5
867 C6 C5 C 0 1 Y N N N N N 42.354 25.296 127.788 12.104 -1.852 -0.320 C6 867 6
867 C11 C6 C 0 1 N N N N N N 40.812 25.232 125.810 14.548 -1.886 -0.714 C11 867 7
867 C12 C7 C 0 1 N N N N N N 39.567 23.445 126.745 16.900 -1.997 -1.109 C12 867 8
867 C13 C8 C 0 1 N N N N N N 48.663 26.038 129.694 6.259 0.539 0.380 C13 867 9
867 C16 C9 C 0 1 N N N N N N 52.360 28.377 131.338 1.371 1.105 0.132 C16 867 10
867 C17 C10 C 0 1 N N N N N N 52.675 31.411 130.837 -2.214 2.112 0.523 C17 867 11
867 C10 C11 C 0 1 Y N N N N N 43.851 25.355 129.765 9.690 -1.832 0.061 C10 867 12
867 C14 C12 C 0 1 N N N N N N 51.071 26.411 130.169 3.839 0.716 0.158 C14 867 13
867 C15 C13 C 0 1 N N N N N N 51.043 27.860 130.705 2.697 1.534 0.764 C15 867 14
867 C18 C14 C 0 1 N N N N N N 51.217 34.776 130.206 -7.130 2.426 0.026 C18 867 15
867 C19 C15 C 0 1 N N R N N N 50.954 35.961 131.124 -8.297 1.818 -0.754 C19 867 16
867 C20 C16 C 0 1 N N S N N N 49.497 36.159 131.536 -9.610 2.562 -0.424 C20 867 17
867 C21 C17 C 0 1 N N R N N N 48.958 36.963 130.350 -10.679 1.447 -0.406 C21 867 18
867 C22 C18 C 0 1 N N R N N N 50.136 37.940 130.195 -9.886 0.161 -0.728 C22 867 19
867 C23 C19 C 0 1 Y N N N N N 50.181 37.932 127.669 -9.931 -1.416 1.241 C23 867 20
867 C24 C20 C 0 1 Y N N N N N 50.468 39.980 127.228 -11.594 -2.712 0.733 C24 867 21
867 C25 C21 C 0 1 Y N N N N N 50.651 41.261 126.686 -12.618 -3.670 0.636 C25 867 22
867 C26 C22 C 0 1 Y N N N N N 50.719 42.040 128.862 -13.260 -2.728 -1.371 C26 867 23
867 C27 C23 C 0 1 Y N N N N N 50.428 39.885 128.606 -11.469 -1.767 -0.299 C27 867 24
867 C28 C24 C 0 1 N N N N N N 52.125 29.529 132.326 0.229 1.923 0.738 C28 867 25
867 C29 C25 C 0 1 N N N N N N 52.856 33.184 129.102 -4.656 2.366 0.371 C29 867 26
867 C30 C26 C 0 1 N N N N N N 52.689 34.402 130.029 -5.823 1.758 -0.409 C30 867 27
867 C4 C27 C 0 1 Y N N N N N 44.782 25.280 127.508 10.979 0.232 0.254 C4 867 28
867 C7 C28 C 0 1 Y N N N N N 46.075 25.297 128.101 9.799 0.919 0.569 C7 867 29
867 C8 C29 C 0 1 Y N N N N N 46.238 25.368 129.469 8.605 0.233 0.623 C8 867 30
867 C9 C30 C 0 1 Y N N N N N 45.110 25.369 130.291 8.560 -1.143 0.368 C9 867 31
867 N10 N2 N 0 1 Y N N N N N 50.547 40.882 129.481 -12.316 -1.812 -1.322 N10 867 32
867 N2 N3 N 0 1 N N N N N N 49.797 25.728 130.391 5.109 1.127 0.763 N2 867 33
867 N3 N4 N 0 1 N N N N N N 51.781 30.777 131.647 -1.040 1.512 0.133 N3 867 34
867 N4 N5 N 0 1 N N N N N N 52.264 31.972 129.670 -3.405 1.727 -0.045 N4 867 35
867 N5 N6 N 0 1 N N N N N N 53.935 31.508 131.040 -2.197 3.046 1.432 N5 867 36
867 N6 N7 N 0 1 Y N N N N N 50.246 38.556 128.883 -10.409 -0.968 0.046 N6 867 37
867 N7 N8 N 0 1 Y N N N N N 50.300 38.736 126.647 -10.627 -2.440 1.642 N7 867 38
867 N8 N9 N 0 1 N N N N N N 50.708 41.520 125.368 -12.790 -4.625 1.622 N8 867 39
867 N9 N10 N 0 1 Y N N N N N 50.773 42.282 127.557 -13.417 -3.636 -0.426 N9 867 40
867 O1 O1 O 0 1 N N N N N N 45.694 25.207 125.312 12.278 2.242 0.435 O1 867 41
867 O2 O2 O 0 1 N N N N N N 39.863 24.863 126.675 15.719 -1.223 -0.770 O2 867 42
867 O3 O3 O 0 1 N N N N N N 40.574 25.515 124.663 14.514 -3.079 -0.942 O3 867 43
867 O4 O4 O 0 1 N N N N N N 48.660 26.886 128.804 6.244 -0.333 -0.467 O4 867 44
867 O5 O5 O 0 1 N N N N N N 49.391 36.882 132.756 -9.908 3.526 -1.436 O5 867 45
867 O6 O6 O 0 1 N N N N N N 47.690 37.551 130.642 -11.670 1.688 -1.407 O6 867 46
867 O7 O7 O 0 1 N N N N N N 51.307 37.182 130.436 -8.529 0.456 -0.333 O7 867 47
867 H1 H1 H 0 1 N N N N N N 43.147 25.182 124.508 14.296 0.740 -0.166 H1 867 48
867 H7 H2 H 0 1 N N N N N N 47.642 24.704 130.825 7.450 1.663 1.556 H7 867 49
867 H2 H3 H 0 1 N N N N N N 41.488 25.325 128.432 12.076 -2.913 -0.518 H2 867 50
867 H9 H4 H 0 1 N N N N N N 38.775 23.272 127.488 17.772 -1.344 -1.119 H9 867 51
867 H10 H5 H 0 1 N N N N N N 39.229 23.092 125.759 17.044 -2.783 -0.367 H10 867 52
867 H8 H6 H 0 1 N N N N N N 40.473 22.896 127.040 16.770 -2.446 -2.093 H8 867 53
867 H17 H7 H 0 1 N N N N N N 52.844 27.547 131.873 1.410 1.277 -0.944 H17 867 54
867 H16 H8 H 0 1 N N N N N N 53.022 28.731 130.534 1.203 0.046 0.325 H16 867 55
867 H5 H9 H 0 1 N N N N N N 42.998 25.379 130.426 9.640 -2.894 -0.133 H5 867 56
867 H13 H10 H 0 1 N N N N N N 51.868 25.855 130.685 3.671 -0.343 0.351 H13 867 57
867 H12 H11 H 0 1 N N N N N N 51.280 26.434 129.089 3.878 0.888 -0.918 H12 867 58
867 H15 H12 H 0 1 N N N N N N 50.790 28.524 129.866 2.866 2.593 0.571 H15 867 59
867 H14 H13 H 0 1 N N N N N N 50.256 27.920 131.471 2.659 1.362 1.840 H14 867 60
867 H21 H14 H 0 1 N N N N N N 50.806 35.016 129.214 -7.076 3.496 -0.176 H21 867 61
867 H22 H15 H 0 1 N N N N N N 50.692 33.902 130.619 -7.283 2.265 1.093 H22 867 62
867 H23 H16 H 0 1 N N N N N N 51.567 35.851 132.031 -8.098 1.857 -1.825 H23 867 63
867 H24 H17 H 0 1 N N N N N N 48.986 35.187 131.595 -9.541 3.044 0.552 H24 867 64
867 H26 H18 H 0 1 N N N N N N 48.899 36.316 129.462 -11.142 1.377 0.578 H26 867 65
867 H28 H19 H 0 1 N N N N N N 50.035 38.725 130.959 -9.932 -0.056 -1.795 H28 867 66
867 H29 H20 H 0 1 N N N N N N 50.043 36.866 127.564 -9.094 -0.989 1.774 H29 867 67
867 H32 H21 H 0 1 N N N N N N 50.830 42.902 129.503 -13.933 -2.737 -2.217 H32 867 68
867 H33 H22 H 0 1 N N N N N N 51.301 29.254 133.001 0.191 1.751 1.814 H33 867 69
867 H34 H23 H 0 1 N N N N N N 53.043 29.686 132.912 0.398 2.982 0.545 H34 867 70
867 H36 H24 H 0 1 N N N N N N 53.929 33.010 128.936 -4.602 3.436 0.169 H36 867 71
867 H35 H25 H 0 1 N N N N N N 52.367 33.400 128.141 -4.809 2.205 1.438 H35 867 72
867 H38 H26 H 0 1 N N N N N N 53.118 34.163 131.013 -5.878 0.688 -0.207 H38 867 73
867 H37 H27 H 0 1 N N N N N N 53.225 35.258 129.594 -5.670 1.919 -1.476 H37 867 74
867 H3 H28 H 0 1 N N N N N N 46.948 25.253 127.466 9.825 1.981 0.768 H3 867 75
867 H4 H29 H 0 1 N N N N N N 45.236 25.381 131.364 7.614 -1.663 0.416 H4 867 76
867 H11 H30 H 0 1 N N N N N N 49.754 25.005 131.081 5.121 1.822 1.439 H11 867 77
867 H18 H31 H 0 1 N N N N N N 50.872 31.173 131.779 -1.053 0.817 -0.543 H18 867 78
867 H19 H32 H 0 1 N N N N N N 51.516 31.533 129.172 -3.417 1.031 -0.721 H19 867 79
867 H20 H33 H 0 1 N N N N N N 54.214 31.055 131.887 -1.357 3.318 1.833 H20 867 80
867 H31 H34 H 0 1 N N N N N N 50.842 42.501 125.226 -12.200 -4.639 2.392 H31 867 81
867 H30 H35 H 0 1 N N N N N N 51.471 41.017 124.962 -13.500 -5.281 1.543 H30 867 82
867 H6 H36 H 0 1 N N N N N N 46.465 25.224 125.867 12.162 2.792 -0.351 H6 867 83
867 H25 H37 H 0 1 N N N N N N 49.734 36.355 133.468 -10.723 4.022 -1.279 H25 867 84
867 H27 H38 H 0 1 N N N N N N 47.034 36.868 130.718 -12.158 2.514 -1.287 H27 867 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
867 O3 C11 DOUB N N 1
867 O1 C3 SING N N 2
867 N8 C25 SING N N 3
867 C2 C3 DOUB Y N 4
867 C2 C1 SING Y N 5
867 C11 C1 SING N N 6
867 C11 O2 SING N N 7
867 C3 C4 SING Y N 8
867 C1 C6 DOUB Y N 9
867 N7 C24 SING Y N 10
867 N7 C23 DOUB Y N 11
867 O2 C12 SING N N 12
867 C25 C24 DOUB Y N 13
867 C25 N9 SING Y N 14
867 C24 C27 SING Y N 15
867 C4 C7 DOUB Y N 16
867 C4 C5 SING Y N 17
867 N9 C26 DOUB Y N 18
867 C23 N6 SING Y N 19
867 C6 C5 SING Y N 20
867 C7 C8 SING Y N 21
867 C5 C10 DOUB Y N 22
867 C27 N6 SING Y N 23
867 C27 N10 DOUB Y N 24
867 O4 C13 DOUB N N 25
867 C26 N10 SING Y N 26
867 N6 C22 SING N N 27
867 C29 N4 SING N N 28
867 C29 C30 SING N N 29
867 C8 N1 SING N N 30
867 C8 C9 DOUB Y N 31
867 N4 C17 SING N N 32
867 C13 N1 SING N N 33
867 C13 N2 SING N N 34
867 C10 C9 SING Y N 35
867 C30 C18 SING N N 36
867 C14 N2 SING N N 37
867 C14 C15 SING N N 38
867 C22 C21 SING N N 39
867 C22 O7 SING N N 40
867 C18 C19 SING N N 41
867 C21 O6 SING N N 42
867 C21 C20 SING N N 43
867 O7 C19 SING N N 44
867 C15 C16 SING N N 45
867 C17 N5 DOUB N N 46
867 C17 N3 SING N N 47
867 C19 C20 SING N N 48
867 C16 C28 SING N N 49
867 C20 O5 SING N N 50
867 N3 C28 SING N N 51
867 C2 H1 SING N N 52
867 N1 H7 SING N N 53
867 C6 H2 SING N N 54
867 C12 H9 SING N N 55
867 C12 H10 SING N N 56
867 C12 H8 SING N N 57
867 C16 H17 SING N N 58
867 C16 H16 SING N N 59
867 C10 H5 SING N N 60
867 C14 H13 SING N N 61
867 C14 H12 SING N N 62
867 C15 H15 SING N N 63
867 C15 H14 SING N N 64
867 C18 H21 SING N N 65
867 C18 H22 SING N N 66
867 C19 H23 SING N N 67
867 C20 H24 SING N N 68
867 C21 H26 SING N N 69
867 C22 H28 SING N N 70
867 C23 H29 SING N N 71
867 C26 H32 SING N N 72
867 C28 H33 SING N N 73
867 C28 H34 SING N N 74
867 C29 H36 SING N N 75
867 C29 H35 SING N N 76
867 C30 H38 SING N N 77
867 C30 H37 SING N N 78
867 C7 H3 SING N N 79
867 C9 H4 SING N N 80
867 N2 H11 SING N N 81
867 N3 H18 SING N N 82
867 N4 H19 SING N N 83
867 N5 H20 SING N N 84
867 N8 H31 SING N N 85
867 N8 H30 SING N N 86
867 O1 H6 SING N N 87
867 O5 H25 SING N N 88
867 O6 H27 SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
867 InChI InChI 1.06 InChI=1S/C30H38N10O7/c1-46-28(44)17-11-16-6-7-18(13-19(16)20(41)12-17)39-30(45)35-9-3-2-8-33-29(32)34-10-4-5-21-23(42)24(43)27(47-21)40-15-38-22-25(31)36-14-37-26(22)40/h6-7,11-15,21,23-24,27,41-43H,2-5,8-10H2,1H3,(H2,31,36,37)(H3,32,33,34)(H2,35,39,45)/t21-,23-,24-,27-/m1/s1
867 InChIKey InChI 1.06 DMXKZVDCWGJXLG-VBHAUSMQSA-N
867 SMILES_CANONICAL CACTVS 3.385 COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCCC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1
867 SMILES CACTVS 3.385 COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCCC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1
867 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NCCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"
867 SMILES "OpenEye OEToolkits" 2.0.7 COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCCCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O
#
_pdbx_chem_comp_identifier.comp_id 867
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"methyl 6-[4-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
867 'Create component' 2021-10-04 PDBE
867 'Initial release' 2022-04-06 RCSB
867 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
867 C1 C 6.897 7.607 1
867 C2 C 6.897 6.107 2
867 C3 C 8.196 5.357 3
867 N1 N 13.491 5.321 4
867 C5 C 9.495 7.607 5
867 C6 C 8.196 8.357 6
867 C11 C 5.598 8.357 7
867 C12 C 3.000 8.357 8
867 C13 C 14.793 6.066 9
867 C16 C 19.989 6.046 10
867 C17 C 23.884 5.281 11
867 C10 C 10.836 8.409 12
867 C14 C 17.391 6.056 13
867 C15 C 18.687 5.301 14
867 C18 C 26.464 0.771 15
867 C19 C 26.459 -0.729 16
867 C20 C 25.242 -1.606 17
867 C21 C 25.700 -3.034 18
867 C22 C 27.200 -3.040 19
867 C23 C 29.568 -4.261 20
867 C24 C 28.821 -6.557 21
867 C25 C 28.661 -8.049 22
867 C26 C 26.078 -7.771 23
867 C27 C 27.609 -5.673 24
867 C28 C 21.285 5.291 25
867 C29 C 25.174 3.026 26
867 C30 C 25.168 1.526 27
867 C4 C 9.495 6.107 28
867 C7 C 10.836 5.306 29
867 C8 C 12.195 6.076 30
867 C9 C 12.195 7.639 31
867 N10 N 26.238 -6.280 32
867 N2 N 16.089 5.311 33
867 N3 N 22.587 6.036 34
867 N4 N 23.878 3.781 35
867 N5 N 25.185 6.026 36
867 N6 N 28.077 -4.257 37
867 N7 N 30.027 -5.680 38
867 N8 N 29.872 -8.933 39
867 N9 N 27.289 -8.656 40
867 O1 O 8.196 3.857 41
867 O2 O 4.299 7.607 42
867 O3 O 5.598 9.857 43
867 O4 O 14.799 7.566 44
867 O5 O 23.817 -1.137 45
867 O6 O 24.813 -4.244 46
867 O7 O 27.669 -1.615 47
867 H20 H 25.191 7.526 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
867 O3 C11 DOUBLE NONE 1
867 O1 C3 SINGLE NONE 2
867 N8 C25 SINGLE NONE 3
867 C2 C3 SINGLE NONE 4
867 C2 C1 DOUBLE NONE 5
867 C11 C1 SINGLE NONE 6
867 C11 O2 SINGLE NONE 7
867 C3 C4 DOUBLE NONE 8
867 C1 C6 SINGLE NONE 9
867 N7 C24 SINGLE NONE 10
867 N7 C23 DOUBLE NONE 11
867 O2 C12 SINGLE NONE 12
867 C25 C24 DOUBLE NONE 13
867 C25 N9 SINGLE NONE 14
867 C24 C27 SINGLE NONE 15
867 C4 C7 SINGLE NONE 16
867 C4 C5 SINGLE NONE 17
867 N9 C26 DOUBLE NONE 18
867 C23 N6 SINGLE NONE 19
867 C6 C5 DOUBLE NONE 20
867 C7 C8 DOUBLE NONE 21
867 C5 C10 SINGLE NONE 22
867 C27 N6 SINGLE NONE 23
867 C27 N10 DOUBLE NONE 24
867 O4 C13 DOUBLE NONE 25
867 C26 N10 SINGLE NONE 26
867 C22 N6 SINGLE BEGINWEDGE 27
867 C29 N4 SINGLE NONE 28
867 C29 C30 SINGLE NONE 29
867 C8 N1 SINGLE NONE 30
867 C8 C9 SINGLE NONE 31
867 N4 C17 SINGLE ENDUPRIGHT 32
867 C13 N1 SINGLE NONE 33
867 C13 N2 SINGLE NONE 34
867 C10 C9 DOUBLE NONE 35
867 C30 C18 SINGLE NONE 36
867 C14 N2 SINGLE NONE 37
867 C14 C15 SINGLE NONE 38
867 C22 C21 SINGLE NONE 39
867 C22 O7 SINGLE NONE 40
867 C19 C18 SINGLE BEGINWEDGE 41
867 C21 O6 SINGLE BEGINDASH 42
867 C21 C20 SINGLE NONE 43
867 O7 C19 SINGLE NONE 44
867 C15 C16 SINGLE NONE 45
867 C17 N5 DOUBLE NONE 46
867 C17 N3 SINGLE ENDUPRIGHT 47
867 C19 C20 SINGLE NONE 48
867 C16 C28 SINGLE NONE 49
867 C20 O5 SINGLE BEGINDASH 50
867 N3 C28 SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
867 MurckoScaffold S1 scaffold 'N=C(NCCCCNC(=O)Nc1ccc2ccccc2c1)NCCC[C@@H]1CC[C@H](n2cnc3cncnc32)O1' InChI=1S/C28H35N9O2/c29-27(31-13-3-4-14-33-28(38)36-22-10-9-20-6-1-2-7-21(20)16-22)32-15-5-8-23-11-12-25(39-23)37-19-35-24-17-30-18-34-26(24)37/h1-2,6-7,9-10,16-19,23,25H,3-5,8,11-15H2,(H3,29,31,32)(H2,33,36,38)/t23-,25-/m1/s1 INFPCCLZBWGKFM-ILBGXUMGSA-N
867 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
867 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
867 napthalene F3 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
867 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
867 purine F5 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
867 pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
867 C1 S1 1
867 C2 S1 1
867 C3 S1 1
867 N1 S1 1
867 C5 S1 1
867 C6 S1 1
867 C13 S1 1
867 C16 S1 1
867 C17 S1 1
867 C10 S1 1
867 C14 S1 1
867 C15 S1 1
867 C18 S1 1
867 C19 S1 1
867 C20 S1 1
867 C21 S1 1
867 C22 S1 1
867 C23 S1 1
867 C24 S1 1
867 C25 S1 1
867 C26 S1 1
867 C27 S1 1
867 C28 S1 1
867 C29 S1 1
867 C30 S1 1
867 C4 S1 1
867 C7 S1 1
867 C8 S1 1
867 C9 S1 1
867 N10 S1 1
867 N2 S1 1
867 N3 S1 1
867 N4 S1 1
867 N5 S1 1
867 N6 S1 1
867 N7 S1 1
867 N9 S1 1
867 O4 S1 1
867 O7 S1 1
867 N9 F1 1
867 C25 F1 1
867 C24 F1 1
867 C27 F1 1
867 N10 F1 1
867 C26 F1 1
867 N6 F1 1
867 C23 F1 1
867 N7 F1 1
867 N8 F1 1
867 C24 F2 1
867 C27 F2 1
867 N6 F2 1
867 C23 F2 1
867 N7 F2 1
867 C1 F3 1
867 C2 F3 1
867 C3 F3 1
867 C4 F3 1
867 C5 F3 1
867 C6 F3 1
867 C10 F3 1
867 C9 F3 1
867 C8 F3 1
867 C7 F3 1
867 C1 F4 1
867 C2 F4 1
867 C3 F4 1
867 C4 F4 1
867 C5 F4 1
867 C6 F4 1
867 C5 F4 2
867 C4 F4 2
867 C7 F4 2
867 C8 F4 2
867 C9 F4 2
867 C10 F4 2
867 N7 F5 1
867 C23 F5 1
867 N6 F5 1
867 C27 F5 1
867 C24 F5 1
867 C25 F5 1
867 N9 F5 1
867 C26 F5 1
867 N10 F5 1
867 C24 F6 1
867 C25 F6 1
867 N9 F6 1
867 C26 F6 1
867 N10 F6 1
867 C27 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 867
_pdbe_chem_comp_rdkit_properties.exactmw 650.292
_pdbe_chem_comp_rdkit_properties.amw 650.697
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 322.611
_pdbe_chem_comp_rdkit_properties.tpsa 254.880
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.966
_pdbe_chem_comp_rdkit_properties.CrippenMR 164.897
_pdbe_chem_comp_rdkit_properties.chi0v 22.330
_pdbe_chem_comp_rdkit_properties.chi1v 11.836
_pdbe_chem_comp_rdkit_properties.chi2v 5.106
_pdbe_chem_comp_rdkit_properties.chi3v 5.106
_pdbe_chem_comp_rdkit_properties.chi4v 3.209
_pdbe_chem_comp_rdkit_properties.chi0n 60.330
_pdbe_chem_comp_rdkit_properties.chi1n 30.191
_pdbe_chem_comp_rdkit_properties.chi2n 5.106
_pdbe_chem_comp_rdkit_properties.chi3n 5.106
_pdbe_chem_comp_rdkit_properties.chi4n 3.209
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.260
_pdbe_chem_comp_rdkit_properties.kappa1 9.879
_pdbe_chem_comp_rdkit_properties.kappa2 14.887
_pdbe_chem_comp_rdkit_properties.kappa3 7.764
_pdbe_chem_comp_rdkit_properties.Phi 3.129
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
867 UniChem ChEMBL CHEMBL5191769
867 UniChem PDBe 867
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
867 C1 11.826 0.270 -0.578 ETKDGv3 1
867 C2 11.793 0.819 0.651 ETKDGv3 2
867 C3 10.528 1.354 1.209 ETKDGv3 3
867 N1 5.753 2.228 0.772 ETKDGv3 4
867 C5 9.427 0.690 -0.874 ETKDGv3 5
867 C6 10.574 0.208 -1.375 ETKDGv3 6
867 C11 13.088 -0.264 -1.134 ETKDGv3 7
867 C12 15.511 -0.701 -0.863 ETKDGv3 8
867 C13 4.464 1.657 0.501 ETKDGv3 9
867 C16 -0.559 2.300 0.794 ETKDGv3 10
867 C17 -3.075 -0.355 1.990 ETKDGv3 11
867 C10 8.173 0.649 -1.649 ETKDGv3 12
867 C14 1.947 1.812 0.650 ETKDGv3 13
867 C15 0.860 2.779 1.138 ETKDGv3 14
867 C18 -7.510 -0.719 2.200 ETKDGv3 15
867 C19 -8.826 -0.526 1.417 ETKDGv3 16
867 C20 -9.724 -1.767 1.408 ETKDGv3 17
867 C21 -9.543 -2.299 0.005 ETKDGv3 18
867 C22 -9.152 -1.057 -0.784 ETKDGv3 19
867 C23 -8.543 -2.246 -3.013 ETKDGv3 20
867 C24 -6.681 -1.270 -3.550 ETKDGv3 21
867 C25 -5.566 -0.851 -4.146 ETKDGv3 22
867 C26 -5.114 0.567 -2.255 ETKDGv3 23
867 C27 -7.043 -0.770 -2.277 ETKDGv3 24
867 C28 -0.996 1.089 1.631 ETKDGv3 25
867 C29 -5.182 -1.753 2.198 ETKDGv3 26
867 C30 -6.603 -1.826 1.627 ETKDGv3 27
867 C4 9.398 1.292 0.481 ETKDGv3 28
867 C7 8.105 1.805 0.986 ETKDGv3 29
867 C8 6.986 1.709 0.245 ETKDGv3 30
867 C9 7.039 1.129 -1.127 ETKDGv3 31
867 N10 -6.330 0.096 -1.626 ETKDGv3 32
867 N2 3.280 2.367 0.885 ETKDGv3 33
867 N3 -2.392 0.743 1.357 ETKDGv3 34
867 N4 -4.438 -0.623 1.634 ETKDGv3 35
867 N5 -2.480 -1.102 2.870 ETKDGv3 36
867 N6 -8.242 -1.408 -1.877 ETKDGv3 37
867 N7 -7.666 -2.200 -3.983 ETKDGv3 38
867 N8 -5.169 -1.331 -5.431 ETKDGv3 39
867 N9 -4.760 0.118 -3.438 ETKDGv3 40
867 O1 10.520 1.916 2.485 ETKDGv3 41
867 O2 14.267 -0.204 -0.382 ETKDGv3 42
867 O3 13.101 -0.775 -2.288 ETKDGv3 43
867 O4 4.370 0.520 -0.038 ETKDGv3 44
867 O5 -11.058 -1.380 1.631 ETKDGv3 45
867 O6 -10.719 -2.870 -0.509 ETKDGv3 46
867 O7 -8.536 -0.138 0.091 ETKDGv3 47
867 H1 12.690 0.879 1.255 ETKDGv3 48
867 H7 5.797 3.020 1.453 ETKDGv3 49
867 H2 10.588 -0.228 -2.367 ETKDGv3 50
867 H9 15.803 -0.161 -1.789 ETKDGv3 51
867 H10 16.291 -0.540 -0.091 ETKDGv3 52
867 H8 15.430 -1.789 -1.073 ETKDGv3 53
867 H17 -1.263 3.139 0.992 ETKDGv3 54
867 H16 -0.624 2.053 -0.288 ETKDGv3 55
867 H5 8.167 0.242 -2.653 ETKDGv3 56
867 H13 1.862 0.846 1.190 ETKDGv3 57
867 H12 1.817 1.627 -0.439 ETKDGv3 58
867 H15 1.018 3.765 0.648 ETKDGv3 59
867 H14 0.954 2.929 2.236 ETKDGv3 60
867 H21 -7.745 -0.952 3.262 ETKDGv3 61
867 H22 -6.967 0.251 2.192 ETKDGv3 62
867 H23 -9.368 0.314 1.907 ETKDGv3 63
867 H24 -9.408 -2.520 2.169 ETKDGv3 64
867 H26 -8.711 -3.041 -0.012 ETKDGv3 65
867 H28 -10.058 -0.572 -1.212 ETKDGv3 66
867 H29 -9.430 -2.863 -3.069 ETKDGv3 67
867 H32 -4.492 1.289 -1.745 ETKDGv3 68
867 H33 -0.356 0.216 1.384 ETKDGv3 69
867 H34 -0.886 1.331 2.711 ETKDGv3 70
867 H36 -4.649 -2.695 1.945 ETKDGv3 71
867 H35 -5.222 -1.662 3.306 ETKDGv3 72
867 H38 -7.033 -2.817 1.885 ETKDGv3 73
867 H37 -6.547 -1.760 0.521 ETKDGv3 74
867 H3 8.051 2.248 1.973 ETKDGv3 75
867 H4 6.146 1.117 -1.739 ETKDGv3 76
867 H11 3.385 3.302 1.340 ETKDGv3 77
867 H18 -2.927 1.307 0.658 ETKDGv3 78
867 H19 -4.894 -0.002 0.929 ETKDGv3 79
867 H20 -1.492 -0.963 3.173 ETKDGv3 80
867 H31 -5.746 -2.032 -5.949 ETKDGv3 81
867 H30 -4.288 -0.981 -5.868 ETKDGv3 82
867 H6 11.364 1.968 3.043 ETKDGv3 83
867 H25 -11.545 -2.188 1.940 ETKDGv3 84
867 H27 -10.811 -3.758 -0.076 ETKDGv3 85
#