data_86X # _chem_comp.id 86X _chem_comp.name 6-chloranyl-7-fluoranyl-3-[3-[(2R)-3-oxidanylidenepiperidin-2-yl]propyl]quinazolin-4-one _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 Cl F N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-04-27 _chem_comp.pdbx_modified_date 2018-03-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.776 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 86X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5XII _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 86X C12 C1 C 0 1 N N N N N N 12.781 -2.677 -9.197 -1.128 -0.046 1.630 C12 86X 1 86X C14 C2 C 0 1 N N N N N N 13.865 -1.426 -7.325 -3.477 0.353 0.880 C14 86X 2 86X C15 C3 C 0 1 N N R N N N 13.509 -0.642 -6.060 -4.419 0.364 -0.326 C15 86X 3 86X C17 C4 C 0 1 N N N N N N 13.031 1.525 -5.153 -5.538 -1.045 -1.950 C17 86X 4 86X C20 C5 C 0 1 N N N N N N 12.098 -0.950 -5.661 -5.782 0.865 0.098 C20 86X 5 86X O21 O1 O 0 1 N N N N N N 11.808 -2.048 -5.189 -5.954 1.352 1.190 O21 86X 6 86X C19 C6 C 0 1 N N N N N N 11.039 0.108 -5.848 -6.925 0.738 -0.887 C19 86X 7 86X C18 C7 C 0 1 N N N N N N 11.487 1.429 -5.176 -6.933 -0.698 -1.425 C18 86X 8 86X N16 N1 N 0 1 N N N N N N 13.633 0.802 -6.285 -4.565 -1.002 -0.852 N16 86X 9 86X C13 C8 C 0 1 N N N N N N 12.648 -1.482 -8.251 -2.069 -0.034 0.424 C13 86X 10 86X N11 N2 N 0 1 N N N N N N 12.323 -2.327 -10.561 0.221 -0.417 1.193 N11 86X 11 86X C22 C9 C 0 1 N N N N N N 13.234 -1.889 -11.506 1.089 0.547 0.808 C22 86X 12 86X O23 O2 O 0 1 N N N N N N 14.424 -1.791 -11.211 0.773 1.723 0.817 O23 86X 13 86X C06 C10 C 0 1 Y N N N N N 12.788 -1.568 -12.770 2.428 0.120 0.380 C06 86X 14 86X C05 C11 C 0 1 Y N N N N N 13.684 -1.126 -13.737 3.395 1.033 -0.034 C05 86X 15 86X C03 C12 C 0 1 Y N N N N N 13.228 -0.804 -15.009 4.636 0.579 -0.426 C03 86X 16 86X CL4 CL1 CL 0 0 N N N N N N 14.337 -0.255 -16.211 5.845 1.713 -0.943 CL04 86X 17 86X C02 C13 C 0 1 Y N N N N N 11.877 -0.925 -15.313 4.928 -0.782 -0.409 C02 86X 18 86X F01 F1 F 0 1 N N N N N N 11.429 -0.610 -16.560 6.151 -1.208 -0.795 F01 86X 19 86X C08 C14 C 0 1 Y N N N N N 10.983 -1.368 -14.344 3.983 -1.701 -0.001 C08 86X 20 86X C07 C15 C 0 1 Y N N N N N 11.442 -1.689 -13.072 2.721 -1.263 0.398 C07 86X 21 86X N09 N3 N 0 1 N N N N N N 10.545 -2.134 -12.098 1.762 -2.133 0.807 N09 86X 22 86X C10 C16 C 0 1 N N N N N N 10.961 -2.440 -10.897 0.589 -1.724 1.184 C10 86X 23 86X H1 H1 H 0 1 N N N N N N 12.170 -3.508 -8.815 -1.104 0.946 2.082 H1 86X 24 86X H2 H2 H 0 1 N N N N N N 13.836 -2.986 -9.240 -1.485 -0.771 2.362 H2 86X 25 86X H3 H3 H 0 1 N N N N N N 14.164 -2.448 -7.051 -3.453 1.344 1.332 H3 86X 26 86X H4 H4 H 0 1 N N N N N N 14.697 -0.927 -7.843 -3.834 -0.372 1.612 H4 86X 27 86X H5 H5 H 0 1 N N N N N N 14.188 -0.949 -5.251 -4.014 1.016 -1.100 H5 86X 28 86X H6 H6 H 0 1 N N N N N N 13.402 1.090 -4.213 -5.552 -2.046 -2.382 H6 86X 29 86X H7 H7 H 0 1 N N N N N N 13.324 2.584 -5.208 -5.250 -0.325 -2.716 H7 86X 30 86X H8 H8 H 0 1 N N N N N N 10.882 0.281 -6.923 -7.869 0.948 -0.385 H8 86X 31 86X H9 H9 H 0 1 N N N N N N 10.099 -0.233 -5.391 -6.781 1.438 -1.710 H9 86X 32 86X H10 H10 H 0 1 N N N N N N 11.079 2.280 -5.741 -7.658 -0.780 -2.235 H10 86X 33 86X H11 H11 H 0 1 N N N N N N 11.107 1.458 -4.144 -7.201 -1.386 -0.623 H11 86X 34 86X H12 H12 H 0 1 N N N N N N 14.600 1.046 -6.361 -3.674 -1.374 -1.143 H12 86X 35 86X H14 H14 H 0 1 N N N N N N 12.591 -0.554 -8.839 -1.713 0.690 -0.308 H14 86X 36 86X H15 H15 H 0 1 N N N N N N 11.734 -1.591 -7.649 -2.093 -1.026 -0.028 H15 86X 37 86X H16 H16 H 0 1 N N N N N N 14.733 -1.033 -13.499 3.174 2.090 -0.049 H16 86X 38 86X H17 H17 H 0 1 N N N N N N 9.933 -1.462 -14.580 4.220 -2.755 0.008 H17 86X 39 86X H18 H18 H 0 1 N N N N N N 10.253 -2.782 -10.156 -0.133 -2.463 1.499 H18 86X 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 86X F01 C02 SING N N 1 86X CL4 C03 SING N N 2 86X C02 C03 DOUB Y N 3 86X C02 C08 SING Y N 4 86X C03 C05 SING Y N 5 86X C08 C07 DOUB Y N 6 86X C05 C06 DOUB Y N 7 86X C07 C06 SING Y N 8 86X C07 N09 SING N N 9 86X C06 C22 SING N N 10 86X N09 C10 DOUB N N 11 86X C22 O23 DOUB N N 12 86X C22 N11 SING N N 13 86X C10 N11 SING N N 14 86X N11 C12 SING N N 15 86X C12 C13 SING N N 16 86X C13 C14 SING N N 17 86X C14 C15 SING N N 18 86X N16 C15 SING N N 19 86X N16 C17 SING N N 20 86X C15 C20 SING N N 21 86X C19 C20 SING N N 22 86X C19 C18 SING N N 23 86X C20 O21 DOUB N N 24 86X C18 C17 SING N N 25 86X C12 H1 SING N N 26 86X C12 H2 SING N N 27 86X C14 H3 SING N N 28 86X C14 H4 SING N N 29 86X C15 H5 SING N N 30 86X C17 H6 SING N N 31 86X C17 H7 SING N N 32 86X C19 H8 SING N N 33 86X C19 H9 SING N N 34 86X C18 H10 SING N N 35 86X C18 H11 SING N N 36 86X N16 H12 SING N N 37 86X C13 H14 SING N N 38 86X C13 H15 SING N N 39 86X C05 H16 SING N N 40 86X C08 H17 SING N N 41 86X C10 H18 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 86X InChI InChI 1.03 InChI=1S/C16H17ClFN3O2/c17-11-7-10-14(8-12(11)18)20-9-21(16(10)23)6-2-3-13-15(22)4-1-5-19-13/h7-9,13,19H,1-6H2/t13-/m1/s1 86X InChIKey InChI 1.03 AAHVYVICLLIXKC-CYBMUJFWSA-N 86X SMILES_CANONICAL CACTVS 3.385 Fc1cc2N=CN(CCC[C@H]3NCCCC3=O)C(=O)c2cc1Cl 86X SMILES CACTVS 3.385 Fc1cc2N=CN(CCC[CH]3NCCCC3=O)C(=O)c2cc1Cl 86X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1c2c(cc(c1Cl)F)N=CN(C2=O)CCC[C@@H]3C(=O)CCCN3 86X SMILES "OpenEye OEToolkits" 2.0.6 c1c2c(cc(c1Cl)F)N=CN(C2=O)CCCC3C(=O)CCCN3 # _pdbx_chem_comp_identifier.comp_id 86X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier 6-chloranyl-7-fluoranyl-3-[3-[(2~{R})-3-oxidanylidenepiperidin-2-yl]propyl]quinazolin-4-one # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 86X 'Create component' 2017-04-27 RCSB 86X 'Initial release' 2018-03-07 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal 86X C12 C 10.893 -0.776 1 86X C14 C 13.491 -0.776 2 86X C15 C 14.790 -0.026 3 86X C17 C 16.089 2.224 4 86X C20 C 16.089 -0.776 5 86X O21 O 16.089 -2.276 6 86X C19 C 17.388 -0.026 7 86X C18 C 17.388 1.474 8 86X N16 N 14.790 1.474 9 86X C13 C 12.192 -0.026 10 86X N11 N 9.594 -0.026 11 86X C22 C 8.295 -0.776 12 86X O23 O 8.295 -2.276 13 86X C06 C 6.996 -0.026 14 86X C05 C 5.655 -0.828 15 86X C03 C 4.296 -0.057 16 86X CL4 Cl 3.000 -0.812 17 86X C02 C 4.296 1.505 18 86X F01 F 3.000 2.260 19 86X C08 C 5.655 2.276 20 86X C07 C 6.996 1.474 21 86X N09 N 8.295 2.224 22 86X C10 C 9.594 1.474 23 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal 86X F01 C02 SINGLE NONE 1 86X CL4 C03 SINGLE NONE 2 86X C02 C03 DOUBLE NONE 3 86X C02 C08 SINGLE NONE 4 86X C03 C05 SINGLE NONE 5 86X C08 C07 DOUBLE NONE 6 86X C05 C06 DOUBLE NONE 7 86X C07 C06 SINGLE NONE 8 86X C07 N09 SINGLE NONE 9 86X C06 C22 SINGLE NONE 10 86X N09 C10 DOUBLE NONE 11 86X C22 O23 DOUBLE NONE 12 86X C22 N11 SINGLE NONE 13 86X C10 N11 SINGLE NONE 14 86X N11 C12 SINGLE NONE 15 86X C12 C13 SINGLE NONE 16 86X C13 C14 SINGLE NONE 17 86X C15 C14 SINGLE BEGINWEDGE 18 86X N16 C15 SINGLE NONE 19 86X N16 C17 SINGLE NONE 20 86X C15 C20 SINGLE NONE 21 86X C19 C20 SINGLE NONE 22 86X C19 C18 SINGLE NONE 23 86X C20 O21 DOUBLE NONE 24 86X C18 C17 SINGLE NONE 25 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys 86X MurckoScaffold S1 scaffold 'O=C1CCCN[C@@H]1CCCn1cnc2ccccc2c1=O' InChI=1S/C16H19N3O2/c20-15-8-3-9-17-14(15)7-4-10-19-11-18-13-6-2-1-5-12(13)16(19)21/h1-2,5-6,11,14,17H,3-4,7-10H2/t14-/m1/s1 QJHHYCHORSWZHW-CQSZACIVSA-N 86X peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N 86X phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N 86X pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N 86X quinazoline F4 fragment c1ccc2ncncc2c1 InChI=1S/C8H6N2/c1-2-4-8-7(3-1)5-9-6-10-8/h1-6H JWVCLYRUEFBMGU-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal 86X C12 S1 1 86X C14 S1 1 86X C15 S1 1 86X C17 S1 1 86X C20 S1 1 86X O21 S1 1 86X C19 S1 1 86X C18 S1 1 86X N16 S1 1 86X C13 S1 1 86X N11 S1 1 86X C22 S1 1 86X O23 S1 1 86X C06 S1 1 86X C05 S1 1 86X C03 S1 1 86X C02 S1 1 86X C08 S1 1 86X C07 S1 1 86X N09 S1 1 86X C10 S1 1 86X O21 F1 1 86X C20 F1 1 86X C15 F1 1 86X N16 F1 1 86X C06 F2 1 86X C05 F2 1 86X C03 F2 1 86X C02 F2 1 86X C08 F2 1 86X C07 F2 1 86X C06 F3 1 86X C07 F3 1 86X N09 F3 1 86X C10 F3 1 86X N11 F3 1 86X C22 F3 1 86X C03 F4 1 86X C02 F4 1 86X C08 F4 1 86X C07 F4 1 86X C06 F4 1 86X C05 F4 1 86X C22 F4 1 86X N11 F4 1 86X C10 F4 1 86X N09 F4 1 # _pdbe_chem_comp_rdkit_properties.comp_id 86X _pdbe_chem_comp_rdkit_properties.exactmw 337.099 _pdbe_chem_comp_rdkit_properties.amw 337.782 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 5 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 1 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4 _pdbe_chem_comp_rdkit_properties.NumHBD 1 _pdbe_chem_comp_rdkit_properties.NumHBA 5 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23 _pdbe_chem_comp_rdkit_properties.NumAtoms 40 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.438 _pdbe_chem_comp_rdkit_properties.NumRings 3 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 2 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 160.960 _pdbe_chem_comp_rdkit_properties.tpsa 63.990 _pdbe_chem_comp_rdkit_properties.CrippenClogP 2.762 _pdbe_chem_comp_rdkit_properties.CrippenMR 84.139 _pdbe_chem_comp_rdkit_properties.chi0v 11.670 _pdbe_chem_comp_rdkit_properties.chi1v 6.229 _pdbe_chem_comp_rdkit_properties.chi2v 2.795 _pdbe_chem_comp_rdkit_properties.chi3v 2.795 _pdbe_chem_comp_rdkit_properties.chi4v 1.665 _pdbe_chem_comp_rdkit_properties.chi0n 27.914 _pdbe_chem_comp_rdkit_properties.chi1n 14.299 _pdbe_chem_comp_rdkit_properties.chi2n 2.534 _pdbe_chem_comp_rdkit_properties.chi3n 2.534 _pdbe_chem_comp_rdkit_properties.chi4n 1.523 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.790 _pdbe_chem_comp_rdkit_properties.kappa1 5.358 _pdbe_chem_comp_rdkit_properties.kappa2 6.762 _pdbe_chem_comp_rdkit_properties.kappa3 3.429 _pdbe_chem_comp_rdkit_properties.Phi 1.575 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id 86X UniChem PDBe 86X 86X UniChem PubChem 132451790 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 86X C12 0.244 0.716 -0.366 ETKDGv3 1 86X C14 -1.589 -0.856 -1.239 ETKDGv3 2 86X C15 -2.788 -0.147 -0.567 ETKDGv3 3 86X C17 -5.170 0.290 -0.812 ETKDGv3 4 86X C20 -3.134 -0.755 0.778 ETKDGv3 5 86X O21 -2.383 -0.627 1.733 ETKDGv3 6 86X C19 -4.448 -1.459 0.946 ETKDGv3 7 86X C18 -5.597 -0.615 0.368 ETKDGv3 8 86X N16 -3.952 -0.200 -1.476 ETKDGv3 9 86X C13 -0.243 -0.732 -0.500 ETKDGv3 10 86X N11 1.621 0.741 0.140 ETKDGv3 11 86X C22 2.741 0.664 -0.764 ETKDGv3 12 86X O23 2.557 0.613 -2.011 ETKDGv3 13 86X C06 4.102 0.644 -0.208 ETKDGv3 14 86X C05 5.207 0.598 -0.974 ETKDGv3 15 86X C03 6.544 0.580 -0.340 ETKDGv3 16 86X CL4 7.977 0.522 -1.351 ETKDGv3 17 86X C02 6.651 0.609 0.999 ETKDGv3 18 86X F01 7.871 0.593 1.593 ETKDGv3 19 86X C08 5.435 0.657 1.838 ETKDGv3 20 86X C07 4.224 0.675 1.264 ETKDGv3 21 86X N09 3.042 0.715 2.071 ETKDGv3 22 86X C10 1.843 0.742 1.567 ETKDGv3 23 86X H1 0.188 1.232 -1.350 ETKDGv3 24 86X H2 -0.415 1.276 0.332 ETKDGv3 25 86X H3 -1.462 -0.447 -2.265 ETKDGv3 26 86X H4 -1.825 -1.938 -1.349 ETKDGv3 27 86X H5 -2.536 0.924 -0.413 ETKDGv3 28 86X H6 -5.995 0.341 -1.556 ETKDGv3 29 86X H7 -5.001 1.327 -0.447 ETKDGv3 30 86X H8 -4.644 -1.679 2.018 ETKDGv3 31 86X H9 -4.393 -2.429 0.405 ETKDGv3 32 86X H10 -6.021 0.026 1.172 ETKDGv3 33 86X H11 -6.407 -1.300 0.035 ETKDGv3 34 86X H12 -4.120 -1.185 -1.792 ETKDGv3 35 86X H14 -0.299 -1.208 0.500 ETKDGv3 36 86X H15 0.512 -1.305 -1.082 ETKDGv3 37 86X H16 5.134 0.575 -2.054 ETKDGv3 38 86X H17 5.530 0.678 2.917 ETKDGv3 39 86X H18 0.997 0.766 2.242 ETKDGv3 40 #