data_8BW
#
_chem_comp.id 8BW
_chem_comp.name 6-(cyclobutylmethoxy)phthalazine-1,4-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-07
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 244.246
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8BW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PWS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8BW C4 C1 C 0 1 Y N N N N N -13.676 15.117 -10.881 0.480 1.056 0.148 C4 8BW 1
8BW C5 C2 C 0 1 Y N N N N N -13.515 14.740 -9.572 -0.564 0.129 0.166 C5 8BW 2
8BW C6 C3 C 0 1 N N N N N N -11.155 14.955 -9.807 -2.869 -0.437 0.271 C6 8BW 3
8BW C11 C4 C 0 1 Y N N N N N -14.642 14.638 -8.735 -0.300 -1.232 0.092 C11 8BW 4
8BW C7 C5 C 0 1 N N N N N N -9.870 15.067 -9.031 -4.239 0.236 0.377 C7 8BW 5
8BW C8 C6 C 0 1 N N N N N N -9.863 15.955 -7.776 -4.842 0.624 -0.983 C8 8BW 6
8BW C9 C7 C 0 1 N N N N N N -9.218 14.823 -6.989 -6.197 0.156 -0.427 C9 8BW 7
8BW C10 C8 C 0 1 N N N N N N -9.369 13.893 -8.193 -5.404 -0.757 0.522 C10 8BW 8
8BW C12 C9 C 0 1 Y N N N N N -15.886 14.899 -9.226 1.003 -1.692 -0.001 C12 8BW 9
8BW C13 C10 C 0 1 Y N N N N N -16.065 15.293 -10.552 2.049 -0.782 -0.020 C13 8BW 10
8BW N1 N1 N 0 1 N N N N N N -17.505 15.946 -12.337 4.412 -0.228 -0.129 N1 8BW 11
8BW N2 N2 N 0 1 N N N N N N -16.388 16.041 -13.191 4.183 0.977 -0.076 N2 8BW 12
8BW C3 C11 C 0 1 Y N N N N N -14.960 15.402 -11.394 1.783 0.605 0.049 C3 8BW 13
8BW O1 O1 O 0 1 N N N N N N -18.393 15.531 -10.335 3.770 -2.360 -0.185 O1 8BW 14
8BW C1 C12 C 0 1 N N N N N N -17.370 15.584 -11.041 3.464 -1.186 -0.117 C1 8BW 15
8BW C2 C13 C 0 1 N N N N N N -15.134 15.757 -12.758 2.950 1.513 0.023 C2 8BW 16
8BW O2 O2 O 0 1 N N N N N N -14.203 15.870 -13.552 2.799 2.717 0.071 O2 8BW 17
8BW O3 O3 O 0 1 N N N N N N -12.277 14.474 -9.040 -1.847 0.562 0.257 O3 8BW 18
8BW H1 H1 H 0 1 N N N N N N -12.813 15.197 -11.525 0.272 2.114 0.205 H1 8BW 19
8BW H2 H2 H 0 1 N N N N N N -10.990 14.263 -10.646 -2.721 -1.097 1.126 H2 8BW 20
8BW H3 H3 H 0 1 N N N N N N -11.408 15.952 -10.198 -2.821 -1.019 -0.650 H3 8BW 21
8BW H4 H4 H 0 1 N N N N N N -14.520 14.352 -7.701 -1.117 -1.937 0.107 H4 8BW 22
8BW H5 H5 H 0 1 N N N N N N -9.065 15.396 -9.705 -4.258 1.042 1.110 H5 8BW 23
8BW H6 H6 H 0 1 N N N N N N -9.237 16.855 -7.865 -4.800 1.693 -1.191 H6 8BW 24
8BW H7 H7 H 0 1 N N N N N N -10.864 16.238 -7.419 -4.477 0.017 -1.812 H7 8BW 25
8BW H8 H8 H 0 1 N N N N N N -9.791 14.508 -6.105 -6.753 0.942 0.086 H8 8BW 26
8BW H9 H9 H 0 1 N N N N N N -8.174 15.016 -6.700 -6.803 -0.386 -1.152 H9 8BW 27
8BW H10 H10 H 0 1 N N N N N N -10.110 13.092 -8.053 -5.193 -1.742 0.105 H10 8BW 28
8BW H11 H11 H 0 1 N N N N N N -8.422 13.459 -8.548 -5.816 -0.802 1.530 H11 8BW 29
8BW H12 H12 H 0 1 N N N N N N -16.745 14.799 -8.579 1.203 -2.752 -0.058 H12 8BW 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8BW O2 C2 DOUB N N 1
8BW N2 C2 SING N N 2
8BW N2 N1 DOUB N N 3
8BW C2 C3 SING N N 4
8BW N1 C1 SING N N 5
8BW C3 C4 DOUB Y N 6
8BW C3 C13 SING Y N 7
8BW C1 C13 SING N N 8
8BW C1 O1 DOUB N N 9
8BW C4 C5 SING Y N 10
8BW C13 C12 DOUB Y N 11
8BW C6 O3 SING N N 12
8BW C6 C7 SING N N 13
8BW C5 O3 SING N N 14
8BW C5 C11 DOUB Y N 15
8BW C12 C11 SING Y N 16
8BW C7 C10 SING N N 17
8BW C7 C8 SING N N 18
8BW C10 C9 SING N N 19
8BW C8 C9 SING N N 20
8BW C4 H1 SING N N 21
8BW C6 H2 SING N N 22
8BW C6 H3 SING N N 23
8BW C11 H4 SING N N 24
8BW C7 H5 SING N N 25
8BW C8 H6 SING N N 26
8BW C8 H7 SING N N 27
8BW C9 H8 SING N N 28
8BW C9 H9 SING N N 29
8BW C10 H10 SING N N 30
8BW C10 H11 SING N N 31
8BW C12 H12 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8BW InChI InChI 1.06 InChI=1S/C13H12N2O3/c16-12-10-5-4-9(18-7-8-2-1-3-8)6-11(10)13(17)15-14-12/h4-6,8H,1-3,7H2
8BW InChIKey InChI 1.06 NWOORGOMYQAWAE-UHFFFAOYSA-N
8BW SMILES_CANONICAL CACTVS 3.385 O=C1N=NC(=O)c2cc(OCC3CCC3)ccc12
8BW SMILES CACTVS 3.385 O=C1N=NC(=O)c2cc(OCC3CCC3)ccc12
8BW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1OCC3CCC3)C(=O)N=NC2=O
8BW SMILES "OpenEye OEToolkits" 2.0.7 c1cc2c(cc1OCC3CCC3)C(=O)N=NC2=O
#
_pdbx_chem_comp_identifier.comp_id 8BW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 6-(cyclobutylmethoxy)phthalazine-1,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8BW 'Create component' 2021-10-07 PDBE
8BW 'Initial release' 2022-05-11 RCSB
8BW 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8BW C4 C 10.033 -1.500 1
8BW C5 C 8.734 -0.750 2
8BW C6 C 6.136 -0.750 3
8BW C11 C 8.734 0.750 4
8BW C7 C 4.837 -1.500 5
8BW C8 C 4.449 -2.949 6
8BW C9 C 3.000 -2.561 7
8BW C10 C 3.388 -1.112 8
8BW C12 C 10.033 1.500 9
8BW C13 C 11.332 0.750 10
8BW N1 N 14.032 0.781 11
8BW N2 N 14.032 -0.781 12
8BW C3 C 11.332 -0.750 13
8BW O1 O 12.656 3.052 14
8BW C1 C 12.673 1.552 15
8BW C2 C 12.673 -1.552 16
8BW O2 O 12.656 -3.052 17
8BW O3 O 7.435 -1.500 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8BW O2 C2 DOUBLE NONE 1
8BW N2 C2 SINGLE NONE 2
8BW N2 N1 DOUBLE NONE 3
8BW C2 C3 SINGLE NONE 4
8BW N1 C1 SINGLE NONE 5
8BW C3 C4 DOUBLE NONE 6
8BW C3 C13 SINGLE NONE 7
8BW C1 C13 SINGLE NONE 8
8BW C1 O1 DOUBLE NONE 9
8BW C4 C5 SINGLE NONE 10
8BW C13 C12 DOUBLE NONE 11
8BW C6 O3 SINGLE NONE 12
8BW C6 C7 SINGLE NONE 13
8BW C5 O3 SINGLE NONE 14
8BW C5 C11 DOUBLE NONE 15
8BW C12 C11 SINGLE NONE 16
8BW C7 C10 SINGLE NONE 17
8BW C7 C8 SINGLE NONE 18
8BW C10 C9 SINGLE NONE 19
8BW C8 C9 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8BW MurckoScaffold S1 scaffold O=C1N=NC(=O)c2cc(OCC3CCC3)ccc21 InChI=1S/C13H12N2O3/c16-12-10-5-4-9(18-7-8-2-1-3-8)6-11(10)13(17)15-14-12/h4-6,8H,1-3,7H2 NWOORGOMYQAWAE-UHFFFAOYSA-N
8BW cyclobutane F1 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
8BW phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8BW C4 S1 1
8BW C5 S1 1
8BW C6 S1 1
8BW C11 S1 1
8BW C7 S1 1
8BW C8 S1 1
8BW C9 S1 1
8BW C10 S1 1
8BW C12 S1 1
8BW C13 S1 1
8BW N1 S1 1
8BW N2 S1 1
8BW C3 S1 1
8BW O1 S1 1
8BW C1 S1 1
8BW C2 S1 1
8BW O2 S1 1
8BW O3 S1 1
8BW C7 F1 1
8BW C10 F1 1
8BW C9 F1 1
8BW C8 F1 1
8BW C4 F2 1
8BW C3 F2 1
8BW C13 F2 1
8BW C12 F2 1
8BW C11 F2 1
8BW C5 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8BW
_pdbe_chem_comp_rdkit_properties.exactmw 244.085
_pdbe_chem_comp_rdkit_properties.amw 244.250
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.385
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.717
_pdbe_chem_comp_rdkit_properties.tpsa 68.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.040
_pdbe_chem_comp_rdkit_properties.CrippenMR 61.653
_pdbe_chem_comp_rdkit_properties.chi0v 8.619
_pdbe_chem_comp_rdkit_properties.chi1v 4.714
_pdbe_chem_comp_rdkit_properties.chi2v 2.079
_pdbe_chem_comp_rdkit_properties.chi3v 2.079
_pdbe_chem_comp_rdkit_properties.chi4v 1.230
_pdbe_chem_comp_rdkit_properties.chi0n 20.619
_pdbe_chem_comp_rdkit_properties.chi1n 10.714
_pdbe_chem_comp_rdkit_properties.chi2n 2.079
_pdbe_chem_comp_rdkit_properties.chi3n 2.079
_pdbe_chem_comp_rdkit_properties.chi4n 1.230
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.040
_pdbe_chem_comp_rdkit_properties.kappa1 3.979
_pdbe_chem_comp_rdkit_properties.kappa2 4.326
_pdbe_chem_comp_rdkit_properties.kappa3 1.918
_pdbe_chem_comp_rdkit_properties.Phi 0.956
#
_pdbe_chem_comp_external_mappings.comp_id 8BW
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 8BW
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8BW C4 -1.682 -1.452 0.043 ETKDGv3 1
8BW C5 -0.600 -0.765 -0.699 ETKDGv3 2
8BW C6 1.874 -0.928 -1.187 ETKDGv3 3
8BW C11 -0.795 0.498 -1.127 ETKDGv3 4
8BW C7 2.558 -0.578 0.145 ETKDGv3 5
8BW C8 2.183 0.784 0.728 ETKDGv3 6
8BW C9 3.627 1.243 0.583 ETKDGv3 7
8BW C10 4.001 -0.105 -0.018 ETKDGv3 8
8BW C12 -2.062 1.200 -0.831 ETKDGv3 9
8BW C13 -3.033 0.575 -0.145 ETKDGv3 10
8BW N1 -5.314 0.491 0.910 ETKDGv3 11
8BW N2 -5.144 -0.713 1.303 ETKDGv3 12
8BW C3 -2.836 -0.816 0.310 ETKDGv3 13
8BW O1 -4.557 2.407 -0.177 ETKDGv3 14
8BW C1 -4.319 1.222 0.179 ETKDGv3 15
8BW C2 -3.940 -1.453 1.052 ETKDGv3 16
8BW O2 -3.843 -2.638 1.470 ETKDGv3 17
8BW O3 0.579 -1.485 -0.951 ETKDGv3 18
8BW H1 -1.523 -2.472 0.371 ETKDGv3 19
8BW H2 1.841 -0.065 -1.883 ETKDGv3 20
8BW H3 2.485 -1.711 -1.685 ETKDGv3 21
8BW H4 -0.053 1.021 -1.709 ETKDGv3 22
8BW H5 2.475 -1.397 0.894 ETKDGv3 23
8BW H6 1.500 1.388 0.097 ETKDGv3 24
8BW H7 1.864 0.716 1.791 ETKDGv3 25
8BW H8 4.118 1.423 1.565 ETKDGv3 26
8BW H9 3.740 2.079 -0.141 ETKDGv3 27
8BW H10 4.710 -0.673 0.623 ETKDGv3 28
8BW H11 4.334 -0.014 -1.076 ETKDGv3 29
8BW H12 -2.190 2.217 -1.179 ETKDGv3 30
#