data_8C7
#
_chem_comp.id 8C7
_chem_comp.name 4-(cyclohexylmethoxy)benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H19 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-07
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 233.306
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8C7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7PW3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8C7 C4 C1 C 0 1 Y N N N N N 14.856 -13.848 -8.586 -1.582 -1.444 -0.424 C4 8C7 1
8C7 C14 C2 C 0 1 Y N N N N N 14.963 -15.425 -10.856 -2.533 1.091 0.200 C14 8C7 2
8C7 C5 C3 C 0 1 Y N N N N N 13.688 -14.387 -9.109 -0.699 -0.385 -0.253 C5 8C7 3
8C7 C6 C4 C 0 1 N N N N N N 11.333 -14.763 -9.082 1.487 0.545 -0.202 C6 8C7 4
8C7 C11 C5 C 0 1 N N N N N N 9.411 -15.022 -5.712 5.305 0.939 -0.512 C11 8C7 5
8C7 C7 C6 C 0 1 N N N N N N 10.357 -15.267 -8.048 2.945 0.125 -0.396 C7 8C7 6
8C7 C8 C7 C 0 1 N N N N N N 8.946 -15.150 -8.608 3.341 -0.867 0.700 C8 8C7 7
8C7 C9 C8 C 0 1 N N N N N N 7.905 -15.655 -7.618 4.799 -1.287 0.505 C9 8C7 8
8C7 C10 C9 C 0 1 N N N N N N 8.011 -14.947 -6.288 5.700 -0.053 0.584 C10 8C7 9
8C7 C12 C10 C 0 1 N N N N N N 10.469 -14.560 -6.710 3.846 1.359 -0.317 C12 8C7 10
8C7 C13 C11 C 0 1 Y N N N N N 13.745 -15.168 -10.260 -1.179 0.882 0.060 C13 8C7 11
8C7 N1 N1 N 0 1 N N N N N N 17.414 -15.536 -12.273 -5.734 -0.775 0.005 N1 8C7 12
8C7 C3 C12 C 0 1 Y N N N N N 16.071 -14.106 -9.194 -2.937 -1.242 -0.290 C3 8C7 13
8C7 C1 C13 C 0 1 N N N N N N 17.446 -15.223 -10.980 -4.876 0.250 0.175 C1 8C7 14
8C7 O1 O1 O 0 1 N N N N N N 18.500 -15.228 -10.311 -5.298 1.356 0.452 O1 8C7 15
8C7 C2 C14 C 0 1 Y N N N N N 16.146 -14.922 -10.318 -3.424 0.030 0.025 C2 8C7 16
8C7 O2 O2 O 0 1 N N N N N N 12.487 -14.128 -8.497 0.636 -0.587 -0.391 O2 8C7 17
8C7 H1 H1 H 0 1 N N N N N N 14.816 -13.227 -7.704 -1.205 -2.427 -0.667 H1 8C7 18
8C7 H2 H2 H 0 1 N N N N N N 15.000 -16.025 -11.753 -2.905 2.075 0.447 H2 8C7 19
8C7 H3 H3 H 0 1 N N N N N N 10.819 -14.034 -9.725 1.353 0.936 0.807 H3 8C7 20
8C7 H4 H4 H 0 1 N N N N N N 11.671 -15.614 -9.691 1.231 1.317 -0.927 H4 8C7 21
8C7 H5 H5 H 0 1 N N N N N N 9.622 -16.064 -5.428 5.946 1.818 -0.455 H5 8C7 22
8C7 H6 H6 H 0 1 N N N N N N 9.462 -14.381 -4.819 5.420 0.467 -1.487 H6 8C7 23
8C7 H7 H7 H 0 1 N N N N N N 10.563 -16.335 -7.882 3.060 -0.347 -1.372 H7 8C7 24
8C7 H8 H8 H 0 1 N N N N N N 8.739 -14.094 -8.836 3.226 -0.395 1.675 H8 8C7 25
8C7 H9 H9 H 0 1 N N N N N N 8.878 -15.744 -9.531 2.699 -1.746 0.643 H9 8C7 26
8C7 H10 H10 H 0 1 N N N N N N 6.902 -15.482 -8.035 5.081 -1.993 1.286 H10 8C7 27
8C7 H11 H11 H 0 1 N N N N N N 8.056 -16.733 -7.461 4.915 -1.758 -0.471 H11 8C7 28
8C7 H12 H12 H 0 1 N N N N N N 7.741 -13.890 -6.426 6.739 -0.352 0.446 H12 8C7 29
8C7 H13 H13 H 0 1 N N N N N N 7.311 -15.415 -5.580 5.585 0.419 1.560 H13 8C7 30
8C7 H14 H14 H 0 1 N N N N N N 11.464 -14.762 -6.287 3.731 1.831 0.659 H14 8C7 31
8C7 H15 H15 H 0 1 N N N N N N 10.352 -13.478 -6.872 3.564 2.065 -1.098 H15 8C7 32
8C7 H16 H16 H 0 1 N N N N N N 12.838 -15.572 -10.686 -0.490 1.702 0.192 H16 8C7 33
8C7 H17 H17 H 0 1 N N N N N N 18.257 -15.788 -12.747 -5.398 -1.658 -0.216 H17 8C7 34
8C7 H18 H18 H 0 1 N N N N N N 16.547 -15.519 -12.770 -6.688 -0.631 0.103 H18 8C7 35
8C7 H19 H19 H 0 1 N N N N N N 16.973 -13.669 -8.791 -3.623 -2.065 -0.427 H19 8C7 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8C7 N1 C1 SING N N 1
8C7 C1 C2 SING N N 2
8C7 C1 O1 DOUB N N 3
8C7 C14 C2 DOUB Y N 4
8C7 C14 C13 SING Y N 5
8C7 C2 C3 SING Y N 6
8C7 C13 C5 DOUB Y N 7
8C7 C3 C4 DOUB Y N 8
8C7 C5 C4 SING Y N 9
8C7 C5 O2 SING N N 10
8C7 C6 O2 SING N N 11
8C7 C6 C7 SING N N 12
8C7 C8 C7 SING N N 13
8C7 C8 C9 SING N N 14
8C7 C7 C12 SING N N 15
8C7 C9 C10 SING N N 16
8C7 C12 C11 SING N N 17
8C7 C10 C11 SING N N 18
8C7 C4 H1 SING N N 19
8C7 C14 H2 SING N N 20
8C7 C6 H3 SING N N 21
8C7 C6 H4 SING N N 22
8C7 C11 H5 SING N N 23
8C7 C11 H6 SING N N 24
8C7 C7 H7 SING N N 25
8C7 C8 H8 SING N N 26
8C7 C8 H9 SING N N 27
8C7 C9 H10 SING N N 28
8C7 C9 H11 SING N N 29
8C7 C10 H12 SING N N 30
8C7 C10 H13 SING N N 31
8C7 C12 H14 SING N N 32
8C7 C12 H15 SING N N 33
8C7 C13 H16 SING N N 34
8C7 N1 H17 SING N N 35
8C7 N1 H18 SING N N 36
8C7 C3 H19 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8C7 InChI InChI 1.06 InChI=1S/C14H19NO2/c15-14(16)12-6-8-13(9-7-12)17-10-11-4-2-1-3-5-11/h6-9,11H,1-5,10H2,(H2,15,16)
8C7 InChIKey InChI 1.06 MJTCIHDRDLBAGL-UHFFFAOYSA-N
8C7 SMILES_CANONICAL CACTVS 3.385 NC(=O)c1ccc(OCC2CCCCC2)cc1
8C7 SMILES CACTVS 3.385 NC(=O)c1ccc(OCC2CCCCC2)cc1
8C7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C(=O)N)OCC2CCCCC2
8C7 SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C(=O)N)OCC2CCCCC2
#
_pdbx_chem_comp_identifier.comp_id 8C7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 4-(cyclohexylmethoxy)benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8C7 'Create component' 2021-10-07 PDBE
8C7 'Initial release' 2022-05-11 RCSB
8C7 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8C7 C4 C 6.897 1.035 1
8C7 C14 C 4.299 2.535 2
8C7 C5 C 5.598 0.285 3
8C7 C6 C 4.299 -1.965 4
8C7 C11 C 5.598 -5.715 5
8C7 C7 C 4.299 -3.465 6
8C7 C8 C 3.000 -4.215 7
8C7 C9 C 3.000 -5.715 8
8C7 C10 C 4.299 -6.465 9
8C7 C12 C 5.598 -4.215 10
8C7 C13 C 4.299 1.035 11
8C7 N1 N 4.299 5.535 12
8C7 C3 C 6.897 2.535 13
8C7 C1 C 5.598 4.785 14
8C7 O1 O 6.897 5.535 15
8C7 C2 C 5.598 3.285 16
8C7 O2 O 5.598 -1.215 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8C7 N1 C1 SINGLE NONE 1
8C7 C1 C2 SINGLE NONE 2
8C7 C1 O1 DOUBLE NONE 3
8C7 C14 C2 DOUBLE NONE 4
8C7 C14 C13 SINGLE NONE 5
8C7 C2 C3 SINGLE NONE 6
8C7 C13 C5 DOUBLE NONE 7
8C7 C3 C4 DOUBLE NONE 8
8C7 C5 C4 SINGLE NONE 9
8C7 C5 O2 SINGLE NONE 10
8C7 C6 O2 SINGLE NONE 11
8C7 C6 C7 SINGLE NONE 12
8C7 C8 C7 SINGLE NONE 13
8C7 C8 C9 SINGLE NONE 14
8C7 C7 C12 SINGLE NONE 15
8C7 C9 C10 SINGLE NONE 16
8C7 C12 C11 SINGLE NONE 17
8C7 C10 C11 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8C7 MurckoScaffold S1 scaffold c1ccc(OCC2CCCCC2)cc1 InChI=1S/C13H18O/c1-3-7-12(8-4-1)11-14-13-9-5-2-6-10-13/h2,5-6,9-10,12H,1,3-4,7-8,11H2 ZETPYKRXIXPMQA-UHFFFAOYSA-N
8C7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8C7 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
8C7 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8C7 C4 S1 1
8C7 C14 S1 1
8C7 C5 S1 1
8C7 C6 S1 1
8C7 C11 S1 1
8C7 C7 S1 1
8C7 C8 S1 1
8C7 C9 S1 1
8C7 C10 S1 1
8C7 C12 S1 1
8C7 C13 S1 1
8C7 C3 S1 1
8C7 C2 S1 1
8C7 O2 S1 1
8C7 N1 F1 1
8C7 C1 F1 1
8C7 O1 F1 1
8C7 C2 F1 1
8C7 C11 F2 1
8C7 C12 F2 1
8C7 C7 F2 1
8C7 C8 F2 1
8C7 C9 F2 1
8C7 C10 F2 1
8C7 C4 F3 1
8C7 C3 F3 1
8C7 C2 F3 1
8C7 C14 F3 1
8C7 C13 F3 1
8C7 C5 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8C7
_pdbe_chem_comp_rdkit_properties.exactmw 233.142
_pdbe_chem_comp_rdkit_properties.amw 233.311
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.771
_pdbe_chem_comp_rdkit_properties.tpsa 52.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.227
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.154
_pdbe_chem_comp_rdkit_properties.chi0v 8.264
_pdbe_chem_comp_rdkit_properties.chi1v 4.336
_pdbe_chem_comp_rdkit_properties.chi2v 1.571
_pdbe_chem_comp_rdkit_properties.chi3v 1.571
_pdbe_chem_comp_rdkit_properties.chi4v 0.862
_pdbe_chem_comp_rdkit_properties.chi0n 27.264
_pdbe_chem_comp_rdkit_properties.chi1n 13.730
_pdbe_chem_comp_rdkit_properties.chi2n 1.571
_pdbe_chem_comp_rdkit_properties.chi3n 1.571
_pdbe_chem_comp_rdkit_properties.chi4n 0.862
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 2.582
_pdbe_chem_comp_rdkit_properties.kappa2 5.710
_pdbe_chem_comp_rdkit_properties.kappa3 3.479
_pdbe_chem_comp_rdkit_properties.Phi 0.867
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8C7 UniChem ChEMBL CHEMBL5178227
8C7 UniChem PDBe 8C7
8C7 UniChem ZINC ZINC000007509984
8C7 UniChem eMolecules 31330746
8C7 UniChem PubChem 8608139
8C7 UniChem Mcule MCULE-7983546500
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8C7 C4 -2.397 1.645 -0.430 ETKDGv3 1
8C7 C14 -3.595 -0.590 0.791 ETKDGv3 2
8C7 C5 -1.588 0.435 -0.177 ETKDGv3 3
8C7 C6 0.673 -0.632 -0.374 ETKDGv3 4
8C7 C11 4.110 1.123 -0.240 ETKDGv3 5
8C7 C7 2.063 -0.243 -0.906 ETKDGv3 6
8C7 C8 3.056 -1.432 -0.792 ETKDGv3 7
8C7 C9 3.913 -1.345 0.477 ETKDGv3 8
8C7 C10 4.764 -0.060 0.502 ETKDGv3 9
8C7 C12 2.582 1.038 -0.199 ETKDGv3 10
8C7 C13 -2.168 -0.631 0.408 ETKDGv3 11
8C7 N1 -6.559 -0.596 1.118 ETKDGv3 12
8C7 C3 -3.690 1.684 -0.086 ETKDGv3 13
8C7 C1 -5.768 0.581 0.935 ETKDGv3 14
8C7 O1 -6.311 1.708 1.088 ETKDGv3 15
8C7 C2 -4.337 0.508 0.551 ETKDGv3 16
8C7 O2 -0.238 0.451 -0.559 ETKDGv3 17
8C7 H1 -1.939 2.507 -0.897 ETKDGv3 18
8C7 H2 -4.011 -1.454 1.291 ETKDGv3 19
8C7 H3 0.742 -0.885 0.707 ETKDGv3 20
8C7 H4 0.300 -1.518 -0.932 ETKDGv3 21
8C7 H5 4.443 1.127 -1.302 ETKDGv3 22
8C7 H6 4.443 2.079 0.219 ETKDGv3 23
8C7 H7 1.949 -0.013 -1.989 ETKDGv3 24
8C7 H8 3.735 -1.426 -1.673 ETKDGv3 25
8C7 H9 2.522 -2.407 -0.810 ETKDGv3 26
8C7 H10 4.580 -2.233 0.537 ETKDGv3 27
8C7 H11 3.245 -1.367 1.366 ETKDGv3 28
8C7 H12 5.755 -0.265 0.040 ETKDGv3 29
8C7 H13 4.946 0.224 1.561 ETKDGv3 30
8C7 H14 2.259 1.057 0.866 ETKDGv3 31
8C7 H15 2.150 1.935 -0.695 ETKDGv3 32
8C7 H16 -1.609 -1.534 0.614 ETKDGv3 33
8C7 H17 -7.547 -0.512 1.446 ETKDGv3 34
8C7 H18 -6.211 -1.542 0.850 ETKDGv3 35
8C7 H19 -4.263 2.581 -0.285 ETKDGv3 36
#