data_8CH
#
_chem_comp.id 8CH
_chem_comp.name "methyl (2S,3R)-1-(methanesulfonyl)-3-methylpiperidine-2-carboxylate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H17 N O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-09-14
_chem_comp.pdbx_modified_date 2021-09-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 235.301
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8CH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5SC6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8CH C13 C1 C 0 1 N N N N N N 0.326 6.041 -8.453 2.234 0.275 -0.876 C13 8CH 1
8CH C15 C2 C 0 1 N N N N N N -0.579 4.548 -6.661 2.192 -2.172 -0.376 C15 8CH 2
8CH C01 C3 C 0 1 N N N N N N -1.203 2.156 -7.012 0.712 -1.745 1.593 C01 8CH 3
8CH C02 C4 C 0 1 N N R N N N -0.173 3.302 -7.353 0.740 -2.067 0.097 C02 8CH 4
8CH C03 C5 C 0 1 N N S N N N 0.018 3.459 -8.876 0.033 -0.952 -0.679 C03 8CH 5
8CH C04 C6 C 0 1 N N N N N N -1.205 3.221 -9.697 -1.355 -0.754 -0.127 C04 8CH 6
8CH O05 O1 O 0 1 N N N N N N -1.323 2.077 -10.504 -2.424 -1.117 -0.853 O05 8CH 7
8CH C06 C7 C 0 1 N N N N N N -0.597 2.185 -11.705 -3.731 -0.897 -0.259 C06 8CH 8
8CH O07 O2 O 0 1 N N N N N N -2.072 4.023 -9.716 -1.506 -0.268 0.969 O07 8CH 9
8CH N08 N1 N 0 1 N N N N N N 0.658 4.806 -9.315 0.805 0.289 -0.534 N08 8CH 10
8CH S09 S1 S 0 1 N N N N N N 1.682 4.889 -10.665 0.080 1.677 0.004 S09 8CH 11
8CH O10 O3 O 0 1 N N N N N N 2.130 3.531 -10.974 -1.270 1.555 -0.424 O10 8CH 12
8CH C11 C8 C 0 1 N N N N N N 0.805 5.623 -12.087 0.186 1.572 1.812 C11 8CH 13
8CH O12 O4 O 0 1 N N N N N N 2.896 5.637 -10.334 0.912 2.720 -0.485 O12 8CH 14
8CH C14 C9 C 0 1 N N N N N N 0.267 5.722 -6.946 2.917 -0.853 -0.097 C14 8CH 15
8CH H1 H1 H 0 1 N N N N N N 1.100 6.804 -8.620 2.353 0.104 -1.946 H1 8CH 16
8CH H2 H2 H 0 1 N N N N N N -0.652 6.436 -8.767 2.686 1.230 -0.606 H2 8CH 17
8CH H3 H3 H 0 1 N N N N N N -1.609 4.787 -6.965 2.690 -2.981 0.158 H3 8CH 18
8CH H4 H4 H 0 1 N N N N N N -0.550 4.362 -5.577 2.211 -2.377 -1.446 H4 8CH 19
8CH H5 H5 H 0 1 N N N N N N -1.313 2.074 -5.921 1.221 -0.797 1.769 H5 8CH 20
8CH H6 H6 H 0 1 N N N N N N -2.178 2.394 -7.462 -0.322 -1.671 1.929 H6 8CH 21
8CH H7 H7 H 0 1 N N N N N N -0.836 1.201 -7.416 1.218 -2.537 2.145 H7 8CH 22
8CH H8 H8 H 0 1 N N N N N N 0.796 2.988 -6.938 0.230 -3.014 -0.080 H8 8CH 23
8CH H9 H9 H 0 1 N N N N N N 0.739 2.681 -9.167 -0.028 -1.223 -1.733 H9 8CH 24
8CH H10 H10 H 0 1 N N N N N N -0.725 1.266 -12.295 -4.505 -1.233 -0.948 H10 8CH 25
8CH H11 H11 H 0 1 N N N N N N -0.968 3.045 -12.282 -3.805 -1.458 0.673 H11 8CH 26
8CH H12 H12 H 0 1 N N N N N N 0.469 2.329 -11.477 -3.862 0.166 -0.055 H12 8CH 27
8CH H13 H13 H 0 1 N N N N N N 0.479 6.642 -11.831 -0.273 2.455 2.255 H13 8CH 28
8CH H14 H14 H 0 1 N N N N N N 1.481 5.662 -12.954 -0.337 0.679 2.155 H14 8CH 29
8CH H15 H15 H 0 1 N N N N N N -0.073 5.008 -12.333 1.233 1.517 2.111 H15 8CH 30
8CH H16 H16 H 0 1 N N N N N N 1.287 5.521 -6.586 3.957 -0.936 -0.412 H16 8CH 31
8CH H17 H17 H 0 1 N N N N N N -0.144 6.593 -6.415 2.877 -0.635 0.971 H17 8CH 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8CH C11 S09 SING N N 1
8CH C06 O05 SING N N 2
8CH O10 S09 DOUB N N 3
8CH S09 O12 DOUB N N 4
8CH S09 N08 SING N N 5
8CH O05 C04 SING N N 6
8CH O07 C04 DOUB N N 7
8CH C04 C03 SING N N 8
8CH N08 C03 SING N N 9
8CH N08 C13 SING N N 10
8CH C03 C02 SING N N 11
8CH C13 C14 SING N N 12
8CH C02 C01 SING N N 13
8CH C02 C15 SING N N 14
8CH C14 C15 SING N N 15
8CH C13 H1 SING N N 16
8CH C13 H2 SING N N 17
8CH C15 H3 SING N N 18
8CH C15 H4 SING N N 19
8CH C01 H5 SING N N 20
8CH C01 H6 SING N N 21
8CH C01 H7 SING N N 22
8CH C02 H8 SING N N 23
8CH C03 H9 SING N N 24
8CH C06 H10 SING N N 25
8CH C06 H11 SING N N 26
8CH C06 H12 SING N N 27
8CH C11 H13 SING N N 28
8CH C11 H14 SING N N 29
8CH C11 H15 SING N N 30
8CH C14 H16 SING N N 31
8CH C14 H17 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8CH SMILES ACDLabs 12.01 CC1CCCN(C1C(=O)OC)S(=O)(C)=O
8CH InChI InChI 1.03 InChI=1S/C9H17NO4S/c1-7-5-4-6-10(15(3,12)13)8(7)9(11)14-2/h7-8H,4-6H2,1-3H3/t7-,8+/m1/s1
8CH InChIKey InChI 1.03 HLMYNIFJGFTOOM-SFYZADRCSA-N
8CH SMILES_CANONICAL CACTVS 3.385 COC(=O)[C@@H]1[C@H](C)CCCN1[S](C)(=O)=O
8CH SMILES CACTVS 3.385 COC(=O)[CH]1[CH](C)CCCN1[S](C)(=O)=O
8CH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H]1CCCN([C@@H]1C(=O)OC)S(=O)(=O)C
8CH SMILES "OpenEye OEToolkits" 2.0.7 CC1CCCN(C1C(=O)OC)S(=O)(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8CH "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (2S,3R)-1-(methanesulfonyl)-3-methylpiperidine-2-carboxylate"
8CH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (2~{S},3~{R})-3-methyl-1-methylsulfonyl-piperidine-2-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8CH 'Create component' 2021-09-14 RCSB
8CH 'Initial release' 2021-09-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8CH C13 C 9.495 0.750 1
8CH C15 C 8.196 3.000 2
8CH C01 C 5.598 3.000 3
8CH C02 C 6.897 2.250 4
8CH C03 C 6.897 0.750 5
8CH C04 C 5.598 0.000 6
8CH O05 O 4.299 0.750 7
8CH C06 C 3.000 0.000 8
8CH O07 O 5.598 -1.500 9
8CH N08 N 8.196 0.000 10
8CH S09 S 8.196 -1.500 11
8CH O10 O 6.696 -1.500 12
8CH C11 C 9.696 -1.500 13
8CH O12 O 8.196 -3.000 14
8CH C14 C 9.495 2.250 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8CH C11 S09 SINGLE NONE 1
8CH C06 O05 SINGLE NONE 2
8CH O10 S09 DOUBLE NONE 3
8CH S09 O12 DOUBLE NONE 4
8CH S09 N08 SINGLE NONE 5
8CH O05 C04 SINGLE NONE 6
8CH O07 C04 DOUBLE NONE 7
8CH C03 C04 SINGLE BEGINDASH 8
8CH N08 C03 SINGLE NONE 9
8CH N08 C13 SINGLE NONE 10
8CH C03 C02 SINGLE NONE 11
8CH C13 C14 SINGLE NONE 12
8CH C02 C01 SINGLE BEGINDASH 13
8CH C02 C15 SINGLE NONE 14
8CH C14 C15 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8CH MurckoScaffold S1 scaffold C1CCNCC1 InChI=1S/C5H11N/c1-2-4-6-5-3-1/h6H,1-5H2 NQRYJNQNLNOLGT-UHFFFAOYSA-N
8CH peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8CH C13 S1 1
8CH C15 S1 1
8CH C02 S1 1
8CH C03 S1 1
8CH N08 S1 1
8CH C14 S1 1
8CH O07 F1 1
8CH C04 F1 1
8CH C03 F1 1
8CH N08 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8CH
_pdbe_chem_comp_rdkit_properties.exactmw 235.088
_pdbe_chem_comp_rdkit_properties.amw 235.305
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.889
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.333
_pdbe_chem_comp_rdkit_properties.tpsa 63.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.220
_pdbe_chem_comp_rdkit_properties.CrippenMR 55.752
_pdbe_chem_comp_rdkit_properties.chi0v 7.805
_pdbe_chem_comp_rdkit_properties.chi1v 4.720
_pdbe_chem_comp_rdkit_properties.chi2v 2.066
_pdbe_chem_comp_rdkit_properties.chi3v 2.066
_pdbe_chem_comp_rdkit_properties.chi4v 1.343
_pdbe_chem_comp_rdkit_properties.chi0n 23.988
_pdbe_chem_comp_rdkit_properties.chi1n 11.780
_pdbe_chem_comp_rdkit_properties.chi2n 1.311
_pdbe_chem_comp_rdkit_properties.chi3n 1.311
_pdbe_chem_comp_rdkit_properties.chi4n 0.771
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.620
_pdbe_chem_comp_rdkit_properties.kappa1 2.614
_pdbe_chem_comp_rdkit_properties.kappa2 4.486
_pdbe_chem_comp_rdkit_properties.kappa3 2.690
_pdbe_chem_comp_rdkit_properties.Phi 0.782
#
_pdbe_chem_comp_external_mappings.comp_id 8CH
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 8CH
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8CH C13 -1.627 0.215 -1.493 ETKDGv3 1
8CH C15 -0.174 -1.897 -1.444 ETKDGv3 2
8CH C01 0.702 -2.500 0.861 ETKDGv3 3
8CH C02 -0.214 -1.563 0.056 ETKDGv3 4
8CH C03 0.069 -0.042 0.289 ETKDGv3 5
8CH C04 1.545 0.237 0.419 ETKDGv3 6
8CH O05 2.096 0.435 1.689 ETKDGv3 7
8CH C06 3.482 0.681 1.891 ETKDGv3 8
8CH O07 2.276 0.265 -0.609 ETKDGv3 9
8CH N08 -0.473 0.813 -0.802 ETKDGv3 10
8CH S09 -0.894 2.407 -0.210 ETKDGv3 11
8CH O10 0.229 2.954 0.627 ETKDGv3 12
8CH C11 -2.382 2.377 0.773 ETKDGv3 13
8CH O12 -1.109 3.324 -1.381 ETKDGv3 14
8CH C14 -1.203 -1.064 -2.232 ETKDGv3 15
8CH H1 -2.433 -0.026 -0.765 ETKDGv3 16
8CH H2 -2.043 0.927 -2.239 ETKDGv3 17
8CH H3 -0.384 -2.978 -1.601 ETKDGv3 18
8CH H4 0.845 -1.694 -1.839 ETKDGv3 19
8CH H5 0.342 -3.547 0.776 ETKDGv3 20
8CH H6 0.691 -2.214 1.934 ETKDGv3 21
8CH H7 1.746 -2.460 0.483 ETKDGv3 22
8CH H8 -1.249 -1.770 0.413 ETKDGv3 23
8CH H9 -0.409 0.221 1.258 ETKDGv3 24
8CH H10 3.783 1.611 1.363 ETKDGv3 25
8CH H11 3.675 0.805 2.976 ETKDGv3 26
8CH H12 4.079 -0.176 1.514 ETKDGv3 27
8CH H13 -2.289 1.629 1.586 ETKDGv3 28
8CH H14 -2.548 3.379 1.219 ETKDGv3 29
8CH H15 -3.251 2.120 0.133 ETKDGv3 30
8CH H16 -0.767 -0.793 -3.219 ETKDGv3 31
8CH H17 -2.110 -1.678 -2.426 ETKDGv3 32
#