data_8EX
#
_chem_comp.id 8EX
_chem_comp.name 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose
_chem_comp.type "D-saccharide, beta linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C8 H15 N O12 S2"
_chem_comp.mon_nstd_parent_comp_id NGA
_chem_comp.pdbx_synonyms
;[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate;
N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose; 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose;
2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose; 2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-06-22
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 381.334
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8EX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5XS8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 8EX "[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate" PDB ?
2 8EX N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose PDB ?
3 8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose PDB ?
4 8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose PDB ?
5 8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8EX C1 C1 C 0 1 N N R N N N -2.607 0.543 0.078 1.384 1.894 -0.201 C1 8EX 1
8EX C2 C2 C 0 1 N N R N N N -3.626 0.779 1.188 2.318 0.681 -0.216 C2 8EX 2
8EX C3 C3 C 0 1 N N R N N N -3.520 -0.336 2.128 1.789 -0.349 -1.219 C3 8EX 3
8EX C4 C4 C 0 1 N N R N N N -3.798 -1.647 1.358 0.354 -0.725 -0.838 C4 8EX 4
8EX C5 C5 C 0 1 N N R N N N -2.908 -1.736 0.120 -0.505 0.542 -0.798 C5 8EX 5
8EX C6 C6 C 0 1 N N N N N N -3.277 -2.996 -0.664 -1.926 0.182 -0.360 C6 8EX 6
8EX C7 C7 C 0 1 N N N N N N -4.092 3.094 1.887 4.518 1.587 0.310 C7 8EX 7
8EX C8 C8 C 0 1 N N N N N N -3.532 4.360 2.582 5.902 2.022 -0.099 C8 8EX 8
8EX N2 N N 0 1 N N N N N N -3.266 2.081 1.791 3.663 1.104 -0.614 N2 8EX 9
8EX O1 O1 O 0 1 N Y N N N N -3.158 1.573 -0.713 1.841 2.834 0.773 O1 8EX 10
8EX O3 O3 O 0 1 N N N N N N -4.553 -0.161 3.114 2.613 -1.515 -1.188 O3 8EX 11
8EX O4 O4 O 0 1 N N N N N N -5.154 -1.598 0.947 0.349 -1.347 0.448 O4 8EX 12
8EX O5 O5 O 0 1 N N N N N N -3.110 -0.541 -0.730 0.060 1.469 0.131 O5 8EX 13
8EX O6 O6 O 0 1 N N N N N N -2.551 -3.002 -1.841 -2.760 1.339 -0.451 O6 8EX 14
8EX O7 O7 O 0 1 N N N N N N -5.272 3.046 1.553 4.174 1.671 1.469 O7 8EX 15
8EX O1S O1S O 0 1 N N N N N N -1.257 -4.182 -3.435 -4.549 -0.194 -0.525 O1S 8EX 16
8EX O2S O2S O 0 1 N N N N N N -0.341 -3.585 -0.944 -4.227 1.000 1.482 O2S 8EX 17
8EX O3S O3S O 0 1 N N N N N N -2.022 -5.596 -1.690 -4.923 2.273 -0.375 O3S 8EX 18
8EX S1 S1 S 0 1 N N N N N N -1.517 -4.106 -1.949 -4.204 1.095 -0.036 S1 8EX 19
8EX S2 S2 S 0 1 N N N N N N -6.135 -2.808 0.920 0.114 -2.850 0.408 S2 8EX 20
8EX O5S O5S O 0 1 N N N N N N -6.472 -2.984 -0.479 -0.009 -3.274 1.759 O5S 8EX 21
8EX O6S O6S O 0 1 N N N N N N -5.426 -4.047 1.297 -0.892 -3.073 -0.570 O6S 8EX 22
8EX O4S O4S O 0 1 N N N N N N -7.293 -2.464 1.751 1.385 -3.491 -0.129 O4S 8EX 23
8EX H1 H1 H 0 1 N N N N N N -1.541 0.565 0.350 1.380 2.362 -1.185 H1 8EX 24
8EX H2 H2 H 0 1 N N N N N N -4.637 0.825 0.757 2.355 0.236 0.778 H2 8EX 25
8EX H3 H3 H 0 1 N N N N N N -2.522 -0.374 2.589 1.801 0.079 -2.222 H3 8EX 26
8EX H4 H4 H 0 1 N N N N N N -3.609 -2.508 2.016 -0.051 -1.416 -1.578 H4 8EX 27
8EX H5 H5 H 0 1 N N N N N N -1.855 -1.799 0.433 -0.533 0.993 -1.790 H5 8EX 28
8EX H61 H6 H 0 1 N N N N N N -4.353 -2.991 -0.891 -2.319 -0.601 -1.008 H61 8EX 29
8EX H62 H7 H 0 1 N N N N N N -3.031 -3.889 -0.071 -1.909 -0.174 0.670 H62 8EX 30
8EX H81 H8 H 0 1 N N N N N N -4.334 5.105 2.690 6.028 1.874 -1.171 H81 8EX 31
8EX H82 H9 H 0 1 N N N N N N -3.145 4.091 3.576 6.036 3.078 0.140 H82 8EX 32
8EX H83 H10 H 0 1 N N N N N N -2.719 4.783 1.973 6.642 1.431 0.439 H83 8EX 33
8EX HN2 H11 H 0 1 N N N N N N -2.338 2.195 2.146 3.939 1.037 -1.541 HN2 8EX 34
8EX HO1 H12 H 0 1 N Y N N N N -2.933 2.416 -0.337 1.295 3.630 0.838 HO1 8EX 35
8EX HO3 H13 H 0 1 N Y N N N N -4.514 -0.871 3.744 3.539 -1.349 -1.412 HO3 8EX 36
8EX H14 H14 H 0 1 N N N N N N 0.435 -3.372 -1.448 -5.106 0.845 1.854 H14 8EX 37
8EX H15 H15 H 0 1 N N N N N N -8.071 -2.418 1.208 1.342 -4.455 -0.196 H15 8EX 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8EX O1S S1 DOUB N N 1
8EX S1 O6 SING N N 2
8EX S1 O3S DOUB N N 3
8EX S1 O2S SING N N 4
8EX O6 C6 SING N N 5
8EX O5 C1 SING N N 6
8EX O5 C5 SING N N 7
8EX O1 C1 SING N N 8
8EX C6 C5 SING N N 9
8EX O5S S2 DOUB N N 10
8EX C1 C2 SING N N 11
8EX C5 C4 SING N N 12
8EX S2 O4 SING N N 13
8EX S2 O6S DOUB N N 14
8EX S2 O4S SING N N 15
8EX O4 C4 SING N N 16
8EX C2 N2 SING N N 17
8EX C2 C3 SING N N 18
8EX C4 C3 SING N N 19
8EX O7 C7 DOUB N N 20
8EX N2 C7 SING N N 21
8EX C7 C8 SING N N 22
8EX C3 O3 SING N N 23
8EX C1 H1 SING N N 24
8EX C2 H2 SING N N 25
8EX C3 H3 SING N N 26
8EX C4 H4 SING N N 27
8EX C5 H5 SING N N 28
8EX C6 H61 SING N N 29
8EX C6 H62 SING N N 30
8EX C8 H81 SING N N 31
8EX C8 H82 SING N N 32
8EX C8 H83 SING N N 33
8EX N2 HN2 SING N N 34
8EX O1 HO1 SING N N 35
8EX O3 HO3 SING N N 36
8EX O2S H14 SING N N 37
8EX O4S H15 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8EX InChI InChI 1.03 InChI=1S/C8H15NO12S2/c1-3(10)9-5-6(11)7(21-23(16,17)18)4(20-8(5)12)2-19-22(13,14)15/h4-8,11-12H,2H2,1H3,(H,9,10)(H,13,14,15)(H,16,17,18)/t4-,5-,6-,7+,8-/m1/s1
8EX InChIKey InChI 1.03 KWDXXNWKTRGMDM-UIAUGNHASA-N
8EX SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@H]1[C@H](O)O[C@H](CO[S](O)(=O)=O)[C@H](O[S](O)(=O)=O)[C@@H]1O
8EX SMILES CACTVS 3.385 CC(=O)N[CH]1[CH](O)O[CH](CO[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O
8EX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O)COS(=O)(=O)O)OS(=O)(=O)O)O
8EX SMILES "OpenEye OEToolkits" 2.0.6 CC(=O)NC1C(C(C(OC1O)COS(=O)(=O)O)OS(=O)(=O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8EX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate"
8EX "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalpNAc[4S,6S]b
8EX "COMMON NAME" GMML 1.0 N-acetyl-4-sulfo-6-sulfo-b-D-galactopyranose
#
_pdbx_chem_comp_related.comp_id 8EX
_pdbx_chem_comp_related.related_comp_id NGA
_pdbx_chem_comp_related.relationship_type "Carbohydrate core"
_pdbx_chem_comp_related.details ?
#
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 8EX C1 NGA C1 "Carbohydrate core"
2 8EX C2 NGA C2 "Carbohydrate core"
3 8EX C3 NGA C3 "Carbohydrate core"
4 8EX C4 NGA C4 "Carbohydrate core"
5 8EX C5 NGA C5 "Carbohydrate core"
6 8EX C6 NGA C6 "Carbohydrate core"
7 8EX C7 NGA C7 "Carbohydrate core"
8 8EX C8 NGA C8 "Carbohydrate core"
9 8EX N2 NGA N2 "Carbohydrate core"
10 8EX O1 NGA O1 "Carbohydrate core"
11 8EX O3 NGA O3 "Carbohydrate core"
12 8EX O4 NGA O4 "Carbohydrate core"
13 8EX O5 NGA O5 "Carbohydrate core"
14 8EX O6 NGA O6 "Carbohydrate core"
15 8EX O7 NGA O7 "Carbohydrate core"
16 8EX H1 NGA H1 "Carbohydrate core"
17 8EX H83 NGA H83 "Carbohydrate core"
18 8EX HN2 NGA HN2 "Carbohydrate core"
19 8EX HO1 NGA HO1 "Carbohydrate core"
20 8EX HO3 NGA HO3 "Carbohydrate core"
21 8EX H2 NGA H2 "Carbohydrate core"
22 8EX H3 NGA H3 "Carbohydrate core"
23 8EX H4 NGA H4 "Carbohydrate core"
24 8EX H5 NGA H5 "Carbohydrate core"
25 8EX H61 NGA H61 "Carbohydrate core"
26 8EX H62 NGA H62 "Carbohydrate core"
27 8EX H81 NGA H81 "Carbohydrate core"
28 8EX H82 NGA H82 "Carbohydrate core"
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
8EX "CARBOHYDRATE ISOMER" D PDB ?
8EX "CARBOHYDRATE RING" pyranose PDB ?
8EX "CARBOHYDRATE ANOMER" beta PDB ?
8EX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8EX 'Create component' 2017-06-22 PDBJ
8EX 'Initial release' 2018-01-17 RCSB
8EX 'Other modification' 2020-07-03 RCSB
8EX 'Modify parent residue' 2020-07-17 RCSB
8EX 'Modify name' 2020-07-17 RCSB
8EX 'Modify synonyms' 2020-07-17 RCSB
8EX 'Modify linking type' 2020-07-17 RCSB
8EX 'Modify atom id' 2020-07-17 RCSB
8EX 'Modify component atom id' 2020-07-17 RCSB
8EX 'Modify leaving atom flag' 2020-07-17 RCSB
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
8EX '[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate' wwPDB ?
8EX N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose wwPDB ?
8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose wwPDB ?
8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose wwPDB ?
8EX 2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8EX C1 C 10.301 -0.233 1
8EX C2 C 10.301 -1.732 2
8EX C3 C 9.002 -2.482 3
8EX C4 C 7.702 -1.732 4
8EX C5 C 7.702 -0.233 5
8EX C6 C 6.404 0.517 6
8EX C7 C 12.899 -1.732 7
8EX C8 C 14.198 -2.482 8
8EX N2 N 11.600 -2.482 9
8EX O1 O 11.600 0.517 10
8EX O3 O 9.002 -3.982 11
8EX O4 O 6.404 -2.482 12
8EX O5 O 9.002 0.517 13
8EX O6 O 6.404 2.018 14
8EX O7 O 12.899 -0.233 15
8EX O1S O 3.805 3.518 16
8EX O2S O 4.354 1.468 17
8EX O3S O 5.854 4.066 18
8EX S1 S 5.104 2.768 19
8EX S2 S 5.104 -1.732 20
8EX O5S O 3.805 -0.983 21
8EX O6S O 4.354 -3.031 22
8EX O4S O 5.854 -0.433 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8EX O1S S1 DOUBLE NONE 1
8EX S1 O6 SINGLE NONE 2
8EX S1 O3S DOUBLE NONE 3
8EX S1 O2S SINGLE NONE 4
8EX O6 C6 SINGLE NONE 5
8EX O5 C1 SINGLE NONE 6
8EX O5 C5 SINGLE NONE 7
8EX C1 O1 SINGLE BEGINWEDGE 8
8EX C5 C6 SINGLE BEGINWEDGE 9
8EX O5S S2 DOUBLE NONE 10
8EX C1 C2 SINGLE NONE 11
8EX C5 C4 SINGLE NONE 12
8EX S2 O4 SINGLE NONE 13
8EX S2 O6S DOUBLE NONE 14
8EX S2 O4S SINGLE NONE 15
8EX C4 O4 SINGLE BEGINWEDGE 16
8EX C2 N2 SINGLE BEGINDASH 17
8EX C2 C3 SINGLE NONE 18
8EX C4 C3 SINGLE NONE 19
8EX O7 C7 DOUBLE NONE 20
8EX N2 C7 SINGLE NONE 21
8EX C7 C8 SINGLE NONE 22
8EX C3 O3 SINGLE BEGINWEDGE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8EX MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
8EX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8EX pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8EX C1 S1 1
8EX C2 S1 1
8EX C3 S1 1
8EX C4 S1 1
8EX C5 S1 1
8EX O5 S1 1
8EX N2 F1 1
8EX C7 F1 1
8EX O7 F1 1
8EX C8 F1 1
8EX C4 F2 1
8EX C5 F2 1
8EX O5 F2 1
8EX C1 F2 1
8EX C2 F2 1
8EX C3 F2 1
8EX O1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8EX
_pdbe_chem_comp_rdkit_properties.exactmw 381.004
_pdbe_chem_comp_rdkit_properties.amw 381.337
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 152.083
_pdbe_chem_comp_rdkit_properties.tpsa 205.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.423
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.414
_pdbe_chem_comp_rdkit_properties.chi0v 11.796
_pdbe_chem_comp_rdkit_properties.chi1v 7.376
_pdbe_chem_comp_rdkit_properties.chi2v 2.309
_pdbe_chem_comp_rdkit_properties.chi3v 2.309
_pdbe_chem_comp_rdkit_properties.chi4v 1.556
_pdbe_chem_comp_rdkit_properties.chi0n 25.163
_pdbe_chem_comp_rdkit_properties.chi1n 11.790
_pdbe_chem_comp_rdkit_properties.chi2n 1.651
_pdbe_chem_comp_rdkit_properties.chi3n 1.651
_pdbe_chem_comp_rdkit_properties.chi4n 1.023
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.910
_pdbe_chem_comp_rdkit_properties.kappa1 7.142
_pdbe_chem_comp_rdkit_properties.kappa2 7.325
_pdbe_chem_comp_rdkit_properties.kappa3 6.614
_pdbe_chem_comp_rdkit_properties.Phi 2.275
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8EX UniChem ZINC ZINC000012494419
8EX UniChem PubChem 46926201
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8EX C1 -1.221 -1.302 -0.541 ETKDGv3 1
8EX C2 -1.768 -0.629 0.742 ETKDGv3 2
8EX C3 -0.709 0.317 1.375 ETKDGv3 3
8EX C4 0.258 0.869 0.309 ETKDGv3 4
8EX C5 0.892 -0.292 -0.541 ETKDGv3 5
8EX C6 2.360 -0.568 -0.177 ETKDGv3 6
8EX C7 -4.293 -0.479 0.456 ETKDGv3 7
8EX C8 -5.483 0.304 0.007 ETKDGv3 8
8EX N2 -2.989 0.117 0.418 ETKDGv3 9
8EX O1 -1.869 -2.527 -0.762 ETKDGv3 10
8EX O3 -0.003 -0.318 2.416 ETKDGv3 11
8EX O4 1.241 1.665 0.947 ETKDGv3 12
8EX O5 0.174 -1.516 -0.428 ETKDGv3 13
8EX O6 2.844 -1.628 -0.967 ETKDGv3 14
8EX O7 -4.442 -1.671 0.840 ETKDGv3 15
8EX O1S 5.006 -2.994 -1.425 ETKDGv3 16
8EX O2S 5.374 -0.572 -0.568 ETKDGv3 17
8EX O3S 4.443 -2.512 0.910 ETKDGv3 18
8EX S1 4.434 -1.966 -0.491 ETKDGv3 19
8EX S2 1.563 3.053 0.024 ETKDGv3 20
8EX O5S 0.378 3.978 0.070 ETKDGv3 21
8EX O6S 1.862 2.680 -1.402 ETKDGv3 22
8EX O4S 2.899 3.834 0.679 ETKDGv3 23
8EX H1 -1.436 -0.658 -1.427 ETKDGv3 24
8EX H2 -2.012 -1.410 1.498 ETKDGv3 25
8EX H3 -1.233 1.184 1.836 ETKDGv3 26
8EX H4 -0.385 1.471 -0.378 ETKDGv3 27
8EX H5 0.887 0.022 -1.610 ETKDGv3 28
8EX H61 2.959 0.348 -0.374 ETKDGv3 29
8EX H62 2.419 -0.825 0.904 ETKDGv3 30
8EX H81 -5.475 1.305 0.487 ETKDGv3 31
8EX H82 -5.449 0.427 -1.095 ETKDGv3 32
8EX H83 -6.423 -0.218 0.286 ETKDGv3 33
8EX HN2 -2.898 1.075 0.009 ETKDGv3 34
8EX HO1 -1.547 -3.159 -0.067 ETKDGv3 35
8EX HO3 0.336 -1.186 2.080 ETKDGv3 36
8EX H14 6.276 -0.856 -0.272 ETKDGv3 37
8EX H15 3.031 4.635 0.112 ETKDGv3 38
#