data_8IB
#
_chem_comp.id 8IB
_chem_comp.name "2-Hydroxyterephthalic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H6 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2-oxidanylterephthalic acid; 2-hydroxybenzene-1,4-dicarboxylic acid; 2-hydroxyterephthalate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-19
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 182.130
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8IB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Q06
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8IB C1 C1 C 0 1 Y N N N N N 73.055 90.305 5.916 0.887 1.339 -0.004 C1 8IB 1
8IB C2 C2 C 0 1 Y N N N N N 73.222 88.967 5.582 -0.487 1.418 -0.005 C2 8IB 2
8IB C3 C3 C 0 1 Y N N N N N 74.092 88.146 6.306 -1.256 0.252 0.005 C3 8IB 3
8IB C4 C4 C 0 1 Y N N N N N 74.807 88.721 7.379 -0.627 -1.000 0.015 C4 8IB 4
8IB C5 C5 C 0 1 Y N N N N N 74.633 90.061 7.711 0.757 -1.076 0.015 C5 8IB 5
8IB C6 C6 C 0 1 Y N N N N N 73.773 90.867 6.971 1.518 0.092 0.006 C6 8IB 6
8IB C7 C7 C 0 1 N N N N N N 73.611 92.311 7.348 2.995 0.011 0.001 C7 8IB 7
8IB O1 O1 O 0 1 N N N N N N 74.165 92.704 8.377 3.731 1.139 -0.014 O1 8IB 8
8IB O2 O2 O 0 1 N N N N N N 72.912 93.023 6.624 3.544 -1.072 0.009 O2 8IB 9
8IB O3 O3 O 0 1 N N N N N N 75.687 88.005 8.138 -1.370 -2.135 0.024 O3 8IB 10
8IB C8 C8 C 0 1 N N N N N N 74.313 86.670 5.922 -2.730 0.338 0.004 C8 8IB 11
8IB O4 O4 O 0 1 N N N N N N 73.627 86.164 4.950 -3.398 -0.677 0.013 O4 8IB 12
8IB O5 O5 O 0 1 N N N N N N 75.214 86.044 6.565 -3.335 1.542 -0.005 O5 8IB 13
8IB H1 H1 H 0 1 N N N N N N 72.363 90.915 5.354 1.479 2.242 -0.016 H1 8IB 14
8IB H2 H2 H 0 1 N N N N N N 72.671 88.554 4.750 -0.972 2.384 -0.012 H2 8IB 15
8IB H3 H3 H 0 1 N N N N N N 75.170 90.479 8.550 1.246 -2.039 0.023 H3 8IB 16
8IB H5 H4 H 0 1 N N N N N N 73.967 93.623 8.513 4.692 1.036 -0.016 H5 8IB 17
8IB H4 H5 H 0 1 N N N N N N 76.062 88.568 8.804 -1.586 -2.471 -0.856 H4 8IB 18
8IB H6 H6 H 0 1 N N N N N N 75.296 85.163 6.219 -4.301 1.548 -0.004 H6 8IB 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8IB O4 C8 DOUB N N 1
8IB C2 C1 DOUB Y N 2
8IB C2 C3 SING Y N 3
8IB C1 C6 SING Y N 4
8IB C8 C3 SING N N 5
8IB C8 O5 SING N N 6
8IB C3 C4 DOUB Y N 7
8IB O2 C7 DOUB N N 8
8IB C6 C7 SING N N 9
8IB C6 C5 DOUB Y N 10
8IB C7 O1 SING N N 11
8IB C4 C5 SING Y N 12
8IB C4 O3 SING N N 13
8IB C1 H1 SING N N 14
8IB C2 H2 SING N N 15
8IB C5 H3 SING N N 16
8IB O1 H5 SING N N 17
8IB O3 H4 SING N N 18
8IB O5 H6 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8IB InChI InChI 1.06 InChI=1S/C8H6O5/c9-6-3-4(7(10)11)1-2-5(6)8(12)13/h1-3,9H,(H,10,11)(H,12,13)
8IB InChIKey InChI 1.06 CDOWNLMZVKJRSC-UHFFFAOYSA-N
8IB SMILES_CANONICAL CACTVS 3.385 OC(=O)c1ccc(C(O)=O)c(O)c1
8IB SMILES CACTVS 3.385 OC(=O)c1ccc(C(O)=O)c(O)c1
8IB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C(=O)O)O)C(=O)O
8IB SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C(=O)O)O)C(=O)O
#
_pdbx_chem_comp_identifier.comp_id 8IB
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-oxidanylterephthalic acid"
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 8IB "2-oxidanylterephthalic acid" PDB ?
2 8IB "2-hydroxybenzene-1,4-dicarboxylic acid" PUBCHEM ?
3 8IB 2-hydroxyterephthalate PUBCHEM ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8IB 'Create component' 2021-10-19 PDBE
8IB 'Modify name' 2021-10-22 PDBE
8IB 'Initial release' 2022-03-30 RCSB
8IB 'Modify descriptor' 2022-08-22 RCSB
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
8IB '2-oxidanylterephthalic acid' wwPDB ?
8IB '2-hydroxybenzene-1,4-dicarboxylic acid' wwPDB ?
8IB 2-hydroxyterephthalate wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8IB C1 C 7.702 -0.750 1
8IB C2 C 7.702 0.750 2
8IB C3 C 6.404 1.500 3
8IB C4 C 5.104 0.750 4
8IB C5 C 5.104 -0.750 5
8IB C6 C 6.404 -1.500 6
8IB C7 C 6.404 -3.000 7
8IB O1 O 5.104 -3.750 8
8IB O2 O 7.702 -3.750 9
8IB O3 O 3.805 1.500 10
8IB C8 C 6.404 3.000 11
8IB O4 O 7.702 3.750 12
8IB O5 O 5.104 3.750 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8IB O4 C8 DOUBLE NONE 1
8IB C2 C1 DOUBLE NONE 2
8IB C2 C3 SINGLE NONE 3
8IB C1 C6 SINGLE NONE 4
8IB C8 C3 SINGLE NONE 5
8IB C8 O5 SINGLE NONE 6
8IB C3 C4 DOUBLE NONE 7
8IB O2 C7 DOUBLE NONE 8
8IB C6 C7 SINGLE NONE 9
8IB C6 C5 DOUBLE NONE 10
8IB C7 O1 SINGLE NONE 11
8IB C4 C5 SINGLE NONE 12
8IB C4 O3 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8IB MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8IB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8IB C1 S1 1
8IB C2 S1 1
8IB C3 S1 1
8IB C4 S1 1
8IB C5 S1 1
8IB C6 S1 1
8IB C1 F1 1
8IB C2 F1 1
8IB C3 F1 1
8IB C4 F1 1
8IB C5 F1 1
8IB C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8IB
_pdbe_chem_comp_rdkit_properties.exactmw 182.022
_pdbe_chem_comp_rdkit_properties.amw 182.131
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 81.557
_pdbe_chem_comp_rdkit_properties.tpsa 94.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.217
_pdbe_chem_comp_rdkit_properties.CrippenMR 40.883
_pdbe_chem_comp_rdkit_properties.chi0v 6.041
_pdbe_chem_comp_rdkit_properties.chi1v 3.021
_pdbe_chem_comp_rdkit_properties.chi2v 1.186
_pdbe_chem_comp_rdkit_properties.chi3v 1.186
_pdbe_chem_comp_rdkit_properties.chi4v 0.635
_pdbe_chem_comp_rdkit_properties.chi0n 12.041
_pdbe_chem_comp_rdkit_properties.chi1n 5.745
_pdbe_chem_comp_rdkit_properties.chi2n 1.186
_pdbe_chem_comp_rdkit_properties.chi3n 1.186
_pdbe_chem_comp_rdkit_properties.chi4n 0.635
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.040
_pdbe_chem_comp_rdkit_properties.kappa1 3.780
_pdbe_chem_comp_rdkit_properties.kappa2 3.139
_pdbe_chem_comp_rdkit_properties.kappa3 1.756
_pdbe_chem_comp_rdkit_properties.Phi 0.913
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8IB UniChem PDBe 8IB
8IB UniChem ZINC ZINC000001701209
8IB UniChem eMolecules 7428530
8IB UniChem SureChEMBL SCHEMBL193180
8IB UniChem HMDB HMDB0245171
8IB UniChem 'PubChem TPHARMA' 15971510
8IB UniChem NMRShiftDB 70115569
8IB UniChem ACTor 636-94-2
8IB UniChem 'EPA CompTox Dashboard' DTXSID40212983
8IB UniChem ChemicalBook CB01261134
8IB UniChem Nikkaji J94.856J
8IB UniChem PubChem 97257
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8IB C1 -0.701 -1.560 -0.052 ETKDGv3 1
8IB C2 0.628 -1.514 -0.193 ETKDGv3 2
8IB C3 1.364 -0.229 -0.055 ETKDGv3 3
8IB C4 0.665 0.896 0.218 ETKDGv3 4
8IB C5 -0.809 0.836 0.373 ETKDGv3 5
8IB C6 -1.470 -0.328 0.246 ETKDGv3 6
8IB C7 -2.939 -0.387 0.401 ETKDGv3 7
8IB O1 -3.668 0.766 0.681 ETKDGv3 8
8IB O2 -3.546 -1.486 0.280 ETKDGv3 9
8IB O3 1.305 2.127 0.358 ETKDGv3 10
8IB C8 2.841 -0.228 -0.220 ETKDGv3 11
8IB O4 3.447 -1.304 -0.473 ETKDGv3 12
8IB O5 3.579 0.947 -0.100 ETKDGv3 13
8IB H1 -1.211 -2.510 -0.158 ETKDGv3 14
8IB H2 1.162 -2.430 -0.410 ETKDGv3 15
8IB H3 -1.344 1.752 0.590 ETKDGv3 16
8IB H5 -4.675 0.733 0.788 ETKDGv3 17
8IB H4 0.787 2.973 0.561 ETKDGv3 18
8IB H6 4.586 0.944 -0.214 ETKDGv3 19
#