data_8KT
#
_chem_comp.id 8KT
_chem_comp.name "4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]benzoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H5 F3 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-03-09
_chem_comp.pdbx_modified_date 2023-09-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 230.143
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8KT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7X3P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8KT C33 C23 C 0 1 N N N N N N 8.775 -14.477 52.368 3.932 0.040 0.155 C33 8KT 1
8KT O34 O6 O 0 1 N N N N N N 8.705 -14.734 53.530 4.523 -0.801 0.801 O34 8KT 2
8KT C35 C24 C 0 1 Y N N N N N 9.306 -15.502 51.375 2.468 -0.056 -0.020 C35 8KT 3
8KT C36 C25 C 0 1 Y N N N N N 10.271 -16.395 51.774 1.761 -1.114 0.557 C36 8KT 4
8KT C37 C26 C 0 1 Y N N N N N 10.735 -17.352 50.888 0.395 -1.198 0.391 C37 8KT 5
8KT C38 C27 C 0 1 Y N N N N N 10.244 -17.367 49.593 -0.276 -0.237 -0.346 C38 8KT 6
8KT C39 C28 C 0 1 Y N N N N N 9.283 -16.463 49.180 0.418 0.813 -0.920 C39 8KT 7
8KT C40 C29 C 0 1 Y N N N N N 8.806 -15.526 50.085 1.784 0.912 -0.757 C40 8KT 8
8KT C41 C30 C 0 1 N N N N N N 10.667 -18.357 48.539 -1.769 -0.336 -0.524 C41 8KT 9
8KT C42 C31 C 0 1 N N N N N N 11.754 -19.344 48.972 -2.624 0.363 0.535 C42 8KT 10
8KT F43 F1 F 0 1 N N N N N N 12.039 -20.152 47.907 -3.979 0.183 0.234 F43 8KT 11
8KT F44 F2 F 0 1 N N N N N N 11.374 -20.094 50.027 -2.349 -0.184 1.793 F44 8KT 12
8KT F45 F3 F 0 1 N N N N N N 12.867 -18.674 49.331 -2.327 1.730 0.545 F45 8KT 13
8KT N46 N5 N 0 1 N N N N N N 10.724 -18.152 47.069 -2.318 -1.513 -1.202 N46 8KT 14
8KT N47 N6 N 0 1 N N N N N N 9.767 -18.932 47.495 -2.306 -0.473 -1.880 N47 8KT 15
8KT H30 H30 H 0 1 N N N N N N 10.667 -16.350 52.778 2.284 -1.864 1.132 H30 8KT 16
8KT H31 H31 H 0 1 N N N N N N 11.470 -18.078 51.202 -0.153 -2.015 0.836 H31 8KT 17
8KT H32 H32 H 0 1 N N N N N N 8.909 -16.486 48.167 -0.112 1.559 -1.494 H32 8KT 18
8KT H33 H33 H 0 1 N N N N N N 8.048 -14.818 49.784 2.324 1.733 -1.205 H33 8KT 19
8KT OXT OXT O 0 1 N Y N N N N 8.320 -13.222 51.826 4.609 1.065 -0.398 OXT 8KT 20
8KT HXT HXT H 0 1 N Y N N N N 7.978 -12.679 52.527 5.565 1.088 -0.254 HXT 8KT 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8KT N46 N47 DOUB N N 1
8KT N46 C41 SING N N 2
8KT N47 C41 SING N N 3
8KT F43 C42 SING N N 4
8KT C41 C42 SING N N 5
8KT C41 C38 SING N N 6
8KT C42 F45 SING N N 7
8KT C42 F44 SING N N 8
8KT C39 C38 DOUB Y N 9
8KT C39 C40 SING Y N 10
8KT C38 C37 SING Y N 11
8KT C40 C35 DOUB Y N 12
8KT C37 C36 DOUB Y N 13
8KT C35 C36 SING Y N 14
8KT C35 C33 SING N N 15
8KT C33 O34 DOUB N N 16
8KT C36 H30 SING N N 17
8KT C37 H31 SING N N 18
8KT C39 H32 SING N N 19
8KT C40 H33 SING N N 20
8KT C33 OXT SING N N 21
8KT OXT HXT SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8KT InChI InChI 1.03 InChI=1S/C9H5F3N2O2/c10-9(11,12)8(13-14-8)6-3-1-5(2-4-6)7(15)16/h1-4H,(H,15,16)
8KT InChIKey InChI 1.03 CZPAJVBVULSLGG-UHFFFAOYSA-N
8KT SMILES_CANONICAL CACTVS 3.385 OC(=O)c1ccc(cc1)C2(N=N2)C(F)(F)F
8KT SMILES CACTVS 3.385 OC(=O)c1ccc(cc1)C2(N=N2)C(F)(F)F
8KT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C(=O)O)C2(N=N2)C(F)(F)F
8KT SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ccc1C(=O)O)C2(N=N2)C(F)(F)F
#
_pdbx_chem_comp_identifier.comp_id 8KT
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8KT 'Create component' 2022-03-09 PDBJ
8KT 'Initial release' 2023-09-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8KT C33 C 5.598 -3.184 1
8KT O34 O 6.897 -3.934 2
8KT C35 C 5.598 -1.685 3
8KT C36 C 4.299 -0.934 4
8KT C37 C 4.299 0.566 5
8KT C38 C 5.598 1.315 6
8KT C39 C 6.897 0.566 7
8KT C40 C 6.897 -0.934 8
8KT C41 C 5.598 2.816 9
8KT C42 C 4.299 3.566 10
8KT F43 F 3.000 4.316 11
8KT F44 F 3.549 2.267 12
8KT F45 F 5.049 4.864 13
8KT N46 N 7.098 2.816 14
8KT N47 N 6.348 4.114 15
8KT OXT O 4.299 -3.934 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8KT N46 N47 DOUBLE NONE 1
8KT N46 C41 SINGLE NONE 2
8KT N47 C41 SINGLE NONE 3
8KT F43 C42 SINGLE NONE 4
8KT C41 C42 SINGLE NONE 5
8KT C41 C38 SINGLE NONE 6
8KT C42 F45 SINGLE NONE 7
8KT C42 F44 SINGLE NONE 8
8KT C39 C38 DOUBLE NONE 9
8KT C39 C40 SINGLE NONE 10
8KT C38 C37 SINGLE NONE 11
8KT C40 C35 DOUBLE NONE 12
8KT C37 C36 DOUBLE NONE 13
8KT C35 C36 SINGLE NONE 14
8KT C35 C33 SINGLE NONE 15
8KT C33 O34 DOUBLE NONE 16
8KT C33 OXT SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8KT MurckoScaffold S1 scaffold c1ccc(C2N=N2)cc1 InChI=1S/C7H6N2/c1-2-4-6(5-3-1)7-8-9-7/h1-5,7H DCXIMRSHMXAVHX-UHFFFAOYSA-N
8KT phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8KT C35 S1 1
8KT C36 S1 1
8KT C37 S1 1
8KT C38 S1 1
8KT C39 S1 1
8KT C40 S1 1
8KT C41 S1 1
8KT N46 S1 1
8KT N47 S1 1
8KT C35 F1 1
8KT C40 F1 1
8KT C39 F1 1
8KT C38 F1 1
8KT C37 F1 1
8KT C36 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8KT
_pdbe_chem_comp_rdkit_properties.exactmw 230.030
_pdbe_chem_comp_rdkit_properties.amw 230.145
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.531
_pdbe_chem_comp_rdkit_properties.tpsa 62.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.456
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.458
_pdbe_chem_comp_rdkit_properties.chi0v 7.345
_pdbe_chem_comp_rdkit_properties.chi1v 3.872
_pdbe_chem_comp_rdkit_properties.chi2v 1.873
_pdbe_chem_comp_rdkit_properties.chi3v 1.873
_pdbe_chem_comp_rdkit_properties.chi4v 0.994
_pdbe_chem_comp_rdkit_properties.chi0n 12.345
_pdbe_chem_comp_rdkit_properties.chi1n 6.281
_pdbe_chem_comp_rdkit_properties.chi2n 1.873
_pdbe_chem_comp_rdkit_properties.chi3n 1.873
_pdbe_chem_comp_rdkit_properties.chi4n 0.994
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.920
_pdbe_chem_comp_rdkit_properties.kappa1 5.974
_pdbe_chem_comp_rdkit_properties.kappa2 3.034
_pdbe_chem_comp_rdkit_properties.kappa3 1.441
_pdbe_chem_comp_rdkit_properties.Phi 1.133
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8KT UniChem PDBe 8KT
8KT UniChem ZINC ZINC000022067291
8KT UniChem eMolecules 10487795
8KT UniChem fdasrs ES9VAY6FMP
8KT UniChem Nikkaji J576.040B
8KT UniChem ChemicalBook CB4749682
8KT UniChem 'EPA CompTox Dashboard' DTXSID00234747
8KT UniChem SureChEMBL SCHEMBL2380170
8KT UniChem 'PubChem TPHARMA' 15960845
8KT UniChem PubChem 128718
8KT UniChem PubChem 29987742
8KT UniChem ACTor 85559-46-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8KT C33 3.366 0.581 -0.317 ETKDGv3 1
8KT O34 3.972 1.281 0.540 ETKDGv3 2
8KT C35 1.928 0.271 -0.157 ETKDGv3 3
8KT C36 1.232 -0.552 -1.179 ETKDGv3 4
8KT C37 -0.067 -0.845 -1.045 ETKDGv3 5
8KT C38 -0.827 -0.357 0.130 ETKDGv3 6
8KT C39 -0.206 0.407 1.044 ETKDGv3 7
8KT C40 1.230 0.726 0.901 ETKDGv3 8
8KT C41 -2.298 -0.648 0.247 ETKDGv3 9
8KT C42 -3.350 0.306 -0.330 ETKDGv3 10
8KT F43 -4.637 -0.163 -0.117 ETKDGv3 11
8KT F44 -3.223 1.545 0.271 ETKDGv3 12
8KT F45 -3.145 0.445 -1.690 ETKDGv3 13
8KT N46 -2.601 -1.919 0.159 ETKDGv3 14
8KT N47 -2.645 -1.256 1.353 ETKDGv3 15
8KT H30 1.769 -0.920 -2.044 ETKDGv3 16
8KT H31 -0.563 -1.440 -1.801 ETKDGv3 17
8KT H32 -0.749 0.800 1.896 ETKDGv3 18
8KT H33 1.702 1.333 1.663 ETKDGv3 19
8KT OXT 4.064 0.100 -1.421 ETKDGv3 20
8KT HXT 5.049 0.305 -1.544 ETKDGv3 21
#