data_8LQ
#
_chem_comp.id 8LQ
_chem_comp.name
"[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (3~{S})-3-oxidanylbutanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H20 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-02-09
_chem_comp.pdbx_modified_date 2019-08-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 433.310
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8LQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5N45
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8LQ N9 N1 N 0 1 Y N N N N N -14.932 -39.978 9.289 -3.356 0.331 -0.081 N9 8LQ 1
8LQ C8 C1 C 0 1 Y N N N N N -16.247 -39.963 9.018 -3.009 1.168 -1.099 C8 8LQ 2
8LQ N7 N2 N 0 1 Y N N N N N -16.919 -40.049 10.161 -3.958 2.033 -1.307 N7 8LQ 3
8LQ C5 C2 C 0 1 Y N N N N N -16.020 -40.143 11.155 -4.972 1.808 -0.438 C5 8LQ 4
8LQ C6 C3 C 0 1 Y N N N N N -16.127 -40.199 12.501 -6.221 2.406 -0.199 C6 8LQ 5
8LQ N6 N3 N 0 1 N N N N N N -17.338 -40.231 13.035 -6.644 3.487 -0.953 N6 8LQ 6
8LQ N1 N4 N 0 1 Y N N N N N -15.043 -40.261 13.298 -6.987 1.909 0.767 N1 8LQ 7
8LQ C2 C4 C 0 1 Y N N N N N -13.759 -40.228 12.749 -6.592 0.878 1.491 C2 8LQ 8
8LQ N3 N5 N 0 1 Y N N N N N -13.671 -40.096 11.371 -5.431 0.286 1.303 N3 8LQ 9
8LQ C4 C5 C 0 1 Y N N N N N -14.789 -40.090 10.607 -4.598 0.713 0.360 C4 8LQ 10
8LQ CAA C6 C 0 1 N N N N N N -21.002 -39.386 4.849 8.213 2.678 1.438 CAA 8LQ 11
8LQ CAZ C7 C 0 1 N N S N N N -20.543 -39.402 6.331 7.392 1.775 0.516 CAZ 8LQ 12
8LQ OAE O1 O 0 1 N N N N N N -20.534 -38.073 6.844 7.241 2.405 -0.757 OAE 8LQ 13
8LQ CAL C8 C 0 1 N N N N N N -19.135 -40.004 6.506 6.013 1.534 1.133 CAL 8LQ 14
8LQ CAS C9 C 0 1 N N N N N N -18.114 -39.265 5.631 5.250 0.547 0.288 CAS 8LQ 15
8LQ OAC O2 O 0 1 N N N N N N -17.674 -38.176 5.988 5.757 0.084 -0.706 OAC 8LQ 16
8LQ OAQ O3 O 0 1 N N N N N N -17.822 -39.872 4.424 4.006 0.183 0.639 OAQ 8LQ 17
8LQ PBC P1 P 0 1 N N N N N N -16.588 -39.434 3.505 3.258 -0.875 -0.315 PBC 8LQ 18
8LQ OAH O4 O 0 1 N N N N N N -16.929 -37.948 3.061 4.037 -2.283 -0.271 OAH 8LQ 19
8LQ OAD O5 O 0 1 N N N N N N -16.361 -40.335 2.361 3.243 -0.363 -1.704 OAD 8LQ 20
8LQ "O5'" O6 O 0 1 N N N N N N -15.344 -39.475 4.478 1.745 -1.082 0.196 "O5'" 8LQ 21
8LQ "C5'" C10 C 0 1 N N N N N N -15.126 -40.693 5.187 0.790 -1.883 -0.504 "C5'" 8LQ 22
8LQ "C4'" C11 C 0 1 N N R N N N -13.928 -40.543 6.089 -0.541 -1.865 0.251 "C4'" 8LQ 23
8LQ "O4'" O7 O 0 1 N N N N N N -14.167 -39.462 7.030 -1.153 -0.560 0.160 "O4'" 8LQ 24
8LQ "C3'" C12 C 0 1 N N S N N N -13.843 -41.763 6.903 -1.551 -2.823 -0.418 "C3'" 8LQ 25
8LQ "O3'" O8 O 0 1 N N N N N N -13.102 -42.794 6.191 -1.590 -4.072 0.274 "O3'" 8LQ 26
8LQ "C2'" C13 C 0 1 N N R N N N -13.095 -41.240 8.131 -2.905 -2.090 -0.289 "C2'" 8LQ 27
8LQ "O2'" O9 O 0 1 N N N N N N -11.657 -41.024 7.841 -3.822 -2.865 0.487 "O2'" 8LQ 28
8LQ "C1'" C14 C 0 1 N N R N N N -13.775 -39.906 8.337 -2.553 -0.776 0.444 "C1'" 8LQ 29
8LQ H1 H1 H 0 1 N N N N N N -16.686 -39.893 8.034 -2.082 1.120 -1.652 H1 8LQ 30
8LQ H2 H2 H 0 1 N N N N N N -17.262 -40.302 14.030 -6.076 3.840 -1.655 H2 8LQ 31
8LQ H3 H3 H 0 1 N N N N N N -17.829 -39.393 12.797 -7.509 3.891 -0.779 H3 8LQ 32
8LQ H4 H4 H 0 1 N N N N N N -12.877 -40.302 13.368 -7.246 0.506 2.266 H4 8LQ 33
8LQ H5 H5 H 0 1 N N N N N N -22.009 -38.948 4.781 8.328 2.198 2.410 H5 8LQ 34
8LQ H6 H6 H 0 1 N N N N N N -20.300 -38.784 4.254 9.196 2.850 0.999 H6 8LQ 35
8LQ H7 H7 H 0 1 N N N N N N -21.023 -40.415 4.461 7.700 3.632 1.563 H7 8LQ 36
8LQ H8 H8 H 0 1 N N N N N N -21.254 -40.017 6.902 7.906 0.821 0.391 H8 8LQ 37
8LQ H9 H9 H 0 1 N N N N N N -19.667 -37.699 6.741 6.791 3.260 -0.722 H9 8LQ 38
8LQ H10 H10 H 0 1 N N N N N N -19.158 -41.065 6.216 6.130 1.135 2.141 H10 8LQ 39
8LQ H11 H11 H 0 1 N N N N N N -18.835 -39.919 7.561 5.465 2.476 1.176 H11 8LQ 40
8LQ H12 H12 H 0 1 N N N N N N -16.928 -37.892 2.113 4.085 -2.678 0.611 H12 8LQ 41
8LQ H13 H13 H 0 1 N N N N N N -16.014 -40.928 5.793 0.644 -1.481 -1.507 H13 8LQ 42
8LQ H14 H14 H 0 1 N N N N N N -14.945 -41.507 4.470 1.155 -2.907 -0.572 H14 8LQ 43
8LQ H15 H15 H 0 1 N N N N N N -13.011 -40.382 5.504 -0.388 -2.142 1.294 H15 8LQ 44
8LQ H16 H16 H 0 1 N N N N N N -14.844 -42.117 7.190 -1.298 -2.974 -1.467 H16 8LQ 45
8LQ H17 H17 H 0 1 N N N N N N -13.054 -43.577 6.727 -2.209 -4.712 -0.104 H17 8LQ 46
8LQ H18 H18 H 0 1 N N N N N N -13.242 -41.903 8.996 -3.321 -1.878 -1.274 H18 8LQ 47
8LQ H19 H19 H 0 1 N N N N N N -11.221 -40.700 8.621 -4.032 -3.727 0.103 H19 8LQ 48
8LQ H20 H20 H 0 1 N N N N N N -13.034 -39.205 8.748 -2.710 -0.885 1.516 H20 8LQ 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8LQ OAD PBC DOUB N N 1
8LQ OAH PBC SING N N 2
8LQ PBC OAQ SING N N 3
8LQ PBC "O5'" SING N N 4
8LQ OAQ CAS SING N N 5
8LQ "O5'" "C5'" SING N N 6
8LQ CAA CAZ SING N N 7
8LQ "C5'" "C4'" SING N N 8
8LQ CAS OAC DOUB N N 9
8LQ CAS CAL SING N N 10
8LQ "C4'" "C3'" SING N N 11
8LQ "C4'" "O4'" SING N N 12
8LQ "O3'" "C3'" SING N N 13
8LQ CAZ CAL SING N N 14
8LQ CAZ OAE SING N N 15
8LQ "C3'" "C2'" SING N N 16
8LQ "O4'" "C1'" SING N N 17
8LQ "O2'" "C2'" SING N N 18
8LQ "C2'" "C1'" SING N N 19
8LQ "C1'" N9 SING N N 20
8LQ C8 N9 SING Y N 21
8LQ C8 N7 DOUB Y N 22
8LQ N9 C4 SING Y N 23
8LQ N7 C5 SING Y N 24
8LQ C4 C5 DOUB Y N 25
8LQ C4 N3 SING Y N 26
8LQ C5 C6 SING Y N 27
8LQ N3 C2 DOUB Y N 28
8LQ C6 N6 SING N N 29
8LQ C6 N1 DOUB Y N 30
8LQ C2 N1 SING Y N 31
8LQ C8 H1 SING N N 32
8LQ N6 H2 SING N N 33
8LQ N6 H3 SING N N 34
8LQ C2 H4 SING N N 35
8LQ CAA H5 SING N N 36
8LQ CAA H6 SING N N 37
8LQ CAA H7 SING N N 38
8LQ CAZ H8 SING N N 39
8LQ OAE H9 SING N N 40
8LQ CAL H10 SING N N 41
8LQ CAL H11 SING N N 42
8LQ OAH H12 SING N N 43
8LQ "C5'" H13 SING N N 44
8LQ "C5'" H14 SING N N 45
8LQ "C4'" H15 SING N N 46
8LQ "C3'" H16 SING N N 47
8LQ "O3'" H17 SING N N 48
8LQ "C2'" H18 SING N N 49
8LQ "O2'" H19 SING N N 50
8LQ "C1'" H20 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8LQ InChI InChI 1.03 InChI=1S/C14H20N5O9P/c1-6(20)2-8(21)28-29(24,25)26-3-7-10(22)11(23)14(27-7)19-5-18-9-12(15)16-4-17-13(9)19/h4-7,10-11,14,20,22-23H,2-3H2,1H3,(H,24,25)(H2,15,16,17)/t6-,7+,10+,11+,14+/m0/s1
8LQ InChIKey InChI 1.03 ZNHASVNGLACCHV-LTOLZBHSSA-N
8LQ SMILES_CANONICAL CACTVS 3.385 C[C@H](O)CC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
8LQ SMILES CACTVS 3.385 C[CH](O)CC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
8LQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H](CC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O
8LQ SMILES "OpenEye OEToolkits" 2.0.6 CC(CC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O
#
_pdbx_chem_comp_identifier.comp_id 8LQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (3~{S})-3-oxidanylbutanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8LQ 'Create component' 2017-02-09 EBI
8LQ 'Initial release' 2019-08-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8LQ N9 N 7.018 -0.649 1
8LQ C8 C 7.893 -1.856 2
8LQ N7 N 7.018 -3.063 3
8LQ C5 C 5.598 -2.606 4
8LQ C6 C 4.299 -3.356 5
8LQ N6 N 4.299 -4.856 6
8LQ N1 N 3.000 -2.606 7
8LQ C2 C 3.000 -1.106 8
8LQ N3 N 4.299 -0.356 9
8LQ C4 C 5.598 -1.106 10
8LQ CAA C 19.096 5.298 11
8LQ CAZ C 17.881 4.419 12
8LQ OAE O 18.036 2.926 13
8LQ CAL C 16.512 5.031 14
8LQ CAS C 15.297 4.152 15
8LQ OAC O 15.451 2.659 16
8LQ OAQ O 13.928 4.764 17
8LQ PBC P 12.713 3.884 18
8LQ OAH O 11.833 5.099 19
8LQ OAD O 13.592 2.669 20
8LQ "O5'" O 11.498 3.005 21
8LQ "C5'" C 10.129 3.617 22
8LQ "C4'" C 8.913 2.738 23
8LQ "O4'" O 8.911 1.238 24
8LQ "C3'" C 7.487 3.204 25
8LQ "O3'" O 7.027 4.631 26
8LQ "C2'" C 6.604 1.992 27
8LQ "O2'" O 5.104 1.994 28
8LQ "C1'" C 7.483 0.777 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8LQ OAD PBC DOUBLE NONE 1
8LQ PBC OAH SINGLE BEGINWEDGE 2
8LQ PBC OAQ SINGLE NONE 3
8LQ PBC "O5'" SINGLE NONE 4
8LQ OAQ CAS SINGLE NONE 5
8LQ "O5'" "C5'" SINGLE NONE 6
8LQ CAZ CAA SINGLE BEGINDASH 7
8LQ "C4'" "C5'" SINGLE BEGINWEDGE 8
8LQ CAS OAC DOUBLE NONE 9
8LQ CAS CAL SINGLE NONE 10
8LQ "C4'" "C3'" SINGLE NONE 11
8LQ "C4'" "O4'" SINGLE NONE 12
8LQ "C3'" "O3'" SINGLE BEGINDASH 13
8LQ CAZ CAL SINGLE NONE 14
8LQ CAZ OAE SINGLE NONE 15
8LQ "C3'" "C2'" SINGLE NONE 16
8LQ "O4'" "C1'" SINGLE NONE 17
8LQ "C2'" "O2'" SINGLE BEGINDASH 18
8LQ "C2'" "C1'" SINGLE NONE 19
8LQ "C1'" N9 SINGLE BEGINWEDGE 20
8LQ C8 N9 SINGLE NONE 21
8LQ C8 N7 DOUBLE NONE 22
8LQ N9 C4 SINGLE NONE 23
8LQ N7 C5 SINGLE NONE 24
8LQ C4 C5 DOUBLE NONE 25
8LQ C4 N3 SINGLE NONE 26
8LQ C5 C6 SINGLE NONE 27
8LQ N3 C2 DOUBLE NONE 28
8LQ C6 N6 SINGLE NONE 29
8LQ C6 N1 DOUBLE NONE 30
8LQ C2 N1 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8LQ MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
8LQ adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
8LQ imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
8LQ phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
8LQ purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
8LQ pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
8LQ ribose F6 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8LQ N9 S1 1
8LQ C8 S1 1
8LQ N7 S1 1
8LQ C5 S1 1
8LQ C6 S1 1
8LQ N1 S1 1
8LQ C2 S1 1
8LQ N3 S1 1
8LQ C4 S1 1
8LQ "C4'" S1 1
8LQ "O4'" S1 1
8LQ "C3'" S1 1
8LQ "C2'" S1 1
8LQ "C1'" S1 1
8LQ N1 F1 1
8LQ C6 F1 1
8LQ C5 F1 1
8LQ C4 F1 1
8LQ N3 F1 1
8LQ C2 F1 1
8LQ N9 F1 1
8LQ C8 F1 1
8LQ N7 F1 1
8LQ N6 F1 1
8LQ C5 F2 1
8LQ C4 F2 1
8LQ N9 F2 1
8LQ C8 F2 1
8LQ N7 F2 1
8LQ OAQ F3 1
8LQ PBC F3 1
8LQ OAD F3 1
8LQ OAH F3 1
8LQ "O5'" F3 1
8LQ N7 F4 1
8LQ C8 F4 1
8LQ N9 F4 1
8LQ C4 F4 1
8LQ C5 F4 1
8LQ C6 F4 1
8LQ N1 F4 1
8LQ C2 F4 1
8LQ N3 F4 1
8LQ C5 F5 1
8LQ C4 F5 1
8LQ N3 F5 1
8LQ C2 F5 1
8LQ N1 F5 1
8LQ C6 F5 1
8LQ "C2'" F6 1
8LQ "C3'" F6 1
8LQ "C4'" F6 1
8LQ "O4'" F6 1
8LQ "C1'" F6 1
8LQ "C5'" F6 1
8LQ "O5'" F6 1
8LQ "O3'" F6 1
8LQ "O2'" F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8LQ
_pdbe_chem_comp_rdkit_properties.exactmw 433.100
_pdbe_chem_comp_rdkit_properties.amw 433.314
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 14
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 49
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 191.601
_pdbe_chem_comp_rdkit_properties.tpsa 212.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.350
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.796
_pdbe_chem_comp_rdkit_properties.chi0v 14.252
_pdbe_chem_comp_rdkit_properties.chi1v 8.310
_pdbe_chem_comp_rdkit_properties.chi2v 3.582
_pdbe_chem_comp_rdkit_properties.chi3v 3.582
_pdbe_chem_comp_rdkit_properties.chi4v 2.288
_pdbe_chem_comp_rdkit_properties.chi0n 33.358
_pdbe_chem_comp_rdkit_properties.chi1n 16.377
_pdbe_chem_comp_rdkit_properties.chi2n 2.878
_pdbe_chem_comp_rdkit_properties.chi3n 2.878
_pdbe_chem_comp_rdkit_properties.chi4n 1.808
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.190
_pdbe_chem_comp_rdkit_properties.kappa1 7.496
_pdbe_chem_comp_rdkit_properties.kappa2 8.277
_pdbe_chem_comp_rdkit_properties.kappa3 4.698
_pdbe_chem_comp_rdkit_properties.Phi 2.140
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8LQ UniChem PDBe 8LQ
8LQ UniChem PubChem 145945969
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8LQ N9 3.379 1.047 -0.176 ETKDGv3 1
8LQ C8 3.147 0.781 1.216 ETKDGv3 2
8LQ N7 4.237 0.684 1.921 ETKDGv3 3
8LQ C5 5.282 0.881 0.975 ETKDGv3 4
8LQ C6 6.728 0.693 1.146 ETKDGv3 5
8LQ N6 7.302 0.471 2.433 ETKDGv3 6
8LQ N1 7.482 0.727 0.079 ETKDGv3 7
8LQ C2 6.913 0.931 -1.239 ETKDGv3 8
8LQ N3 5.623 1.083 -1.388 ETKDGv3 9
8LQ C4 4.793 1.071 -0.220 ETKDGv3 10
8LQ CAA -7.497 -0.307 -0.136 ETKDGv3 11
8LQ CAZ -6.644 -1.324 0.634 ETKDGv3 12
8LQ OAE -6.420 -0.873 1.945 ETKDGv3 13
8LQ CAL -5.300 -1.591 -0.064 ETKDGv3 14
8LQ CAS -4.425 -0.374 -0.106 ETKDGv3 15
8LQ OAC -4.375 0.325 -1.155 ETKDGv3 16
8LQ OAQ -3.695 -0.014 1.029 ETKDGv3 17
8LQ PBC -2.696 1.386 1.074 ETKDGv3 18
8LQ OAH -1.936 1.482 2.584 ETKDGv3 19
8LQ OAD -3.554 2.614 0.874 ETKDGv3 20
8LQ "O5'" -1.527 1.315 -0.165 ETKDGv3 21
8LQ "C5'" -0.767 0.144 0.013 ETKDGv3 22
8LQ "C4'" 0.302 0.070 -1.080 ETKDGv3 23
8LQ "O4'" 1.176 1.173 -0.975 ETKDGv3 24
8LQ "C3'" 1.135 -1.208 -0.976 ETKDGv3 25
8LQ "O3'" 0.561 -2.315 -1.632 ETKDGv3 26
8LQ "C2'" 2.465 -0.785 -1.555 ETKDGv3 27
8LQ "O2'" 2.568 -1.066 -2.933 ETKDGv3 28
8LQ "C1'" 2.483 0.729 -1.287 ETKDGv3 29
8LQ H1 2.163 0.643 1.643 ETKDGv3 30
8LQ H2 6.701 0.444 3.286 ETKDGv3 31
8LQ H3 8.332 0.335 2.536 ETKDGv3 32
8LQ H4 7.559 0.942 -2.106 ETKDGv3 33
8LQ H5 -8.496 -0.218 0.341 ETKDGv3 34
8LQ H6 -7.640 -0.639 -1.186 ETKDGv3 35
8LQ H7 -7.015 0.693 -0.131 ETKDGv3 36
8LQ H8 -7.200 -2.290 0.663 ETKDGv3 37
8LQ H9 -7.273 -0.993 2.440 ETKDGv3 38
8LQ H10 -4.762 -2.394 0.484 ETKDGv3 39
8LQ H11 -5.480 -1.961 -1.097 ETKDGv3 40
8LQ H12 -1.310 2.245 2.503 ETKDGv3 41
8LQ H13 -0.262 0.148 1.006 ETKDGv3 42
8LQ H14 -1.414 -0.759 -0.073 ETKDGv3 43
8LQ H15 -0.202 0.125 -2.071 ETKDGv3 44
8LQ H16 1.290 -1.474 0.094 ETKDGv3 45
8LQ H17 0.259 -2.033 -2.533 ETKDGv3 46
8LQ H18 3.295 -1.309 -1.031 ETKDGv3 47
8LQ H19 1.880 -0.533 -3.413 ETKDGv3 48
8LQ H20 2.835 1.278 -2.188 ETKDGv3 49
#