data_8ND
#
_chem_comp.id 8ND
_chem_comp.name "(2S)-3-(2-aminoethoxy)propane-1,2-diyl dihexadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H73 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-02-21
_chem_comp.pdbx_modified_date 2017-04-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 611.979
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8ND
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5UWA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8ND C2 C1 C 0 1 N N S N N N 43.773 52.679 49.863 0.498 3.966 0.926 C2 8ND 1
8ND C1 C2 C 0 1 N N N N N N 44.866 51.866 50.550 0.310 4.687 -0.411 C1 8ND 2
8ND C3 C3 C 0 1 N N N N N N 44.401 53.663 48.893 -0.867 3.736 1.577 C3 8ND 3
8ND C10 C4 C 0 1 N N N N N N 41.472 51.889 49.484 2.490 2.672 0.735 C10 8ND 4
8ND C11 C5 C 0 1 N N N N N N 40.398 51.642 48.445 3.234 1.381 0.509 C11 8ND 5
8ND C12 C6 C 0 1 N N N N N N 39.111 52.382 48.806 4.740 1.638 0.601 C12 8ND 6
8ND C13 C7 C 0 1 N N N N N N 37.910 51.926 47.985 5.496 0.328 0.371 C13 8ND 7
8ND C14 C8 C 0 1 N N N N N N 36.626 52.472 48.599 7.001 0.584 0.464 C14 8ND 8
8ND C15 C9 C 0 1 N N N N N N 35.339 51.950 47.959 7.757 -0.726 0.234 C15 8ND 9
8ND C16 C10 C 0 1 N N N N N N 34.575 51.009 48.891 9.263 -0.469 0.327 C16 8ND 10
8ND C17 C11 C 0 1 N N N N N N 33.125 50.806 48.471 10.018 -1.780 0.097 C17 8ND 11
8ND C18 C12 C 0 1 N N N N N N 32.322 50.052 49.540 11.524 -1.523 0.190 C18 8ND 12
8ND C19 C13 C 0 1 N N N N N N 32.951 48.719 49.945 12.280 -2.833 -0.040 C19 8ND 13
8ND C20 C14 C 0 1 N N N N N N 31.936 47.813 50.646 13.785 -2.576 0.052 C20 8ND 14
8ND C21 C15 C 0 1 N N N N N N 32.593 46.911 51.690 14.541 -3.887 -0.177 C21 8ND 15
8ND C22 C16 C 0 1 N N N N N N 31.548 46.167 52.510 16.046 -3.630 -0.085 C22 8ND 16
8ND C23 C17 C 0 1 N N N N N N 32.200 45.344 53.614 16.802 -4.940 -0.314 C23 8ND 17
8ND C24 C18 C 0 1 N N N N N N 32.298 46.121 54.915 18.308 -4.684 -0.222 C24 8ND 18
8ND C25 C19 C 0 1 N N N N N N 32.915 45.242 55.970 19.064 -5.994 -0.451 C25 8ND 19
8ND C30 C20 C 0 1 N N N N N N 43.684 54.977 46.923 -2.941 2.661 1.104 C30 8ND 20
8ND C31 C21 C 0 1 N N N N N N 42.872 56.242 46.924 -3.847 1.823 0.240 C31 8ND 21
8ND C32 C22 C 0 1 N N N N N N 41.845 56.190 45.807 -5.201 1.656 0.933 C32 8ND 22
8ND C33 C23 C 0 1 N N N N N N 40.602 56.977 46.192 -6.122 0.805 0.055 C33 8ND 23
8ND C34 C24 C 0 1 N N N N N N 39.471 56.760 45.198 -7.476 0.638 0.748 C34 8ND 24
8ND C35 C25 C 0 1 N N N N N N 38.979 55.324 45.237 -8.396 -0.212 -0.130 C35 8ND 25
8ND C36 C26 C 0 1 N N N N N N 37.624 55.176 44.561 -9.750 -0.380 0.563 C36 8ND 26
8ND C37 C27 C 0 1 N N N N N N 37.416 53.726 44.148 -10.670 -1.230 -0.315 C37 8ND 27
8ND C38 C28 C 0 1 N N N N N N 35.940 53.417 43.964 -12.024 -1.398 0.378 C38 8ND 28
8ND C39 C29 C 0 1 N N N N N N 35.708 52.041 43.344 -12.945 -2.248 -0.500 C39 8ND 29
8ND C40 C30 C 0 1 N N N N N N 34.231 51.931 42.973 -14.298 -2.415 0.193 C40 8ND 30
8ND C41 C31 C 0 1 N N N N N N 33.750 50.504 42.732 -15.219 -3.266 -0.685 C41 8ND 31
8ND C42 C32 C 0 1 N N N N N N 32.229 50.422 42.853 -16.573 -3.433 0.008 C42 8ND 32
8ND C43 C33 C 0 1 N N N N N N 31.786 49.681 44.110 -17.493 -4.284 -0.869 C43 8ND 33
8ND C44 C34 C 0 1 N N N N N N 30.272 49.513 44.173 -18.847 -4.451 -0.176 C44 8ND 34
8ND C45 C35 C 0 1 N N N N N N 29.864 48.870 45.482 -19.767 -5.301 -1.054 C45 8ND 35
8ND O4 O1 O 0 1 N N N N N N 41.167 52.101 50.648 3.101 3.692 0.948 O4 8ND 36
8ND O5 O2 O 0 1 N N N N N N 44.557 54.772 46.097 -3.301 2.999 2.207 O5 8ND 37
8ND O2 O3 O 0 1 N N N N N N 42.879 51.857 49.104 1.148 2.688 0.699 O2 8ND 38
8ND O3 O4 O 0 1 N N N N N N 43.407 53.973 47.927 -1.733 3.030 0.649 O3 8ND 39
8ND O3P O5 O 0 1 N N N N N N 45.743 52.721 51.279 1.589 5.003 -0.965 O3P 8ND 40
8ND H1 H1 H 0 1 N N N N N N 43.214 53.239 50.627 1.116 4.577 1.584 H1 8ND 41
8ND H2 H2 H 0 1 N N N N N N 44.402 51.149 51.243 -0.234 4.040 -1.099 H2 8ND 42
8ND H3 H3 H 0 1 N N N N N N 45.443 51.320 49.789 -0.254 5.605 -0.252 H3 8ND 43
8ND H4 H4 H 0 1 N N N N N N 45.276 53.209 48.405 -0.742 3.141 2.482 H4 8ND 44
8ND H5 H5 H 0 1 N N N N N N 44.710 54.575 49.425 -1.314 4.696 1.833 H5 8ND 45
8ND H6 H6 H 0 1 N N N N N N 40.190 50.563 48.391 2.942 0.656 1.268 H6 8ND 46
8ND H7 H7 H 0 1 N N N N N N 40.755 51.996 47.467 2.992 0.990 -0.480 H7 8ND 47
8ND H8 H8 H 0 1 N N N N N N 39.265 53.457 48.634 5.032 2.364 -0.158 H8 8ND 48
8ND H9 H9 H 0 1 N N N N N N 38.894 52.209 49.870 4.982 2.029 1.589 H9 8ND 49
8ND H10 H10 H 0 1 N N N N N N 37.871 50.827 47.975 5.204 -0.398 1.131 H10 8ND 50
8ND H11 H11 H 0 1 N N N N N N 38.009 52.299 46.955 5.254 -0.063 -0.617 H11 8ND 51
8ND H12 H12 H 0 1 N N N N N N 36.638 53.567 48.500 7.293 1.310 -0.295 H12 8ND 52
8ND H13 H13 H 0 1 N N N N N N 36.613 52.200 49.665 7.243 0.975 1.452 H13 8ND 53
8ND H14 H14 H 0 1 N N N N N N 34.693 52.806 47.711 7.465 -1.452 0.993 H14 8ND 54
8ND H15 H15 H 0 1 N N N N N N 35.596 51.406 47.038 7.515 -1.117 -0.754 H15 8ND 55
8ND H16 H16 H 0 1 N N N N N N 35.080 50.032 48.893 9.555 0.256 -0.433 H16 8ND 56
8ND H17 H17 H 0 1 N N N N N N 34.590 51.432 49.906 9.505 -0.079 1.315 H17 8ND 57
8ND H18 H18 H 0 1 N N N N N N 32.661 51.790 48.305 9.726 -2.505 0.856 H18 8ND 58
8ND H19 H19 H 0 1 N N N N N N 33.103 50.228 47.535 9.776 -2.170 -0.891 H19 8ND 59
8ND H20 H20 H 0 1 N N N N N N 32.248 50.689 50.434 11.816 -0.797 -0.570 H20 8ND 60
8ND H21 H21 H 0 1 N N N N N N 31.314 49.856 49.145 11.766 -1.132 1.178 H21 8ND 61
8ND H22 H22 H 0 1 N N N N N N 33.322 48.210 49.043 11.988 -3.559 0.719 H22 8ND 62
8ND H23 H23 H 0 1 N N N N N N 33.790 48.912 50.629 12.038 -3.224 -1.028 H23 8ND 63
8ND H24 H24 H 0 1 N N N N N N 31.184 48.442 51.144 14.077 -1.851 -0.707 H24 8ND 64
8ND H25 H25 H 0 1 N N N N N N 31.444 47.182 49.891 14.027 -2.186 1.041 H25 8ND 65
8ND H26 H26 H 0 1 N N N N N N 33.236 46.179 51.179 14.249 -4.612 0.582 H26 8ND 66
8ND H27 H27 H 0 1 N N N N N N 33.205 47.529 52.364 14.299 -4.278 -1.166 H27 8ND 67
8ND H28 H28 H 0 1 N N N N N N 30.861 46.897 52.964 16.338 -2.905 -0.844 H28 8ND 68
8ND H29 H29 H 0 1 N N N N N N 30.983 45.495 51.847 16.288 -3.239 0.904 H29 8ND 69
8ND H30 H30 H 0 1 N N N N N N 31.599 44.438 53.785 16.510 -5.666 0.445 H30 8ND 70
8ND H31 H31 H 0 1 N N N N N N 33.213 45.057 53.294 16.560 -5.331 -1.303 H31 8ND 71
8ND H32 H32 H 0 1 N N N N N N 32.925 47.012 54.765 18.600 -3.958 -0.981 H32 8ND 72
8ND H33 H33 H 0 1 N N N N N N 31.292 46.430 55.236 18.550 -4.293 0.766 H33 8ND 73
8ND H34 H34 H 0 1 N N N N N N 32.989 45.800 56.915 18.822 -6.385 -1.440 H34 8ND 74
8ND H35 H35 H 0 1 N N N N N N 32.287 44.351 56.118 20.136 -5.811 -0.386 H35 8ND 75
8ND H36 H36 H 0 1 N N N N N N 33.920 44.933 55.648 18.772 -6.720 0.308 H36 8ND 76
8ND H37 H37 H 0 1 N N N N N N 43.537 57.104 46.769 -3.990 2.316 -0.722 H37 8ND 77
8ND H38 H38 H 0 1 N N N N N N 42.357 56.345 47.890 -3.396 0.843 0.082 H38 8ND 78
8ND H39 H39 H 0 1 N N N N N N 41.567 55.142 45.619 -5.059 1.163 1.894 H39 8ND 79
8ND H40 H40 H 0 1 N N N N N N 42.280 56.623 44.894 -5.652 2.635 1.090 H40 8ND 80
8ND H41 H41 H 0 1 N N N N N N 40.852 58.048 46.220 -6.264 1.298 -0.907 H41 8ND 81
8ND H42 H42 H 0 1 N N N N N N 40.268 56.652 47.189 -5.670 -0.174 -0.103 H42 8ND 82
8ND H43 H43 H 0 1 N N N N N N 39.834 56.988 44.185 -7.333 0.145 1.709 H43 8ND 83
8ND H44 H44 H 0 1 N N N N N N 38.638 57.433 45.449 -7.927 1.618 0.905 H44 8ND 84
8ND H45 H45 H 0 1 N N N N N N 38.891 55.006 46.286 -8.538 0.281 -1.092 H45 8ND 85
8ND H46 H46 H 0 1 N N N N N N 39.708 54.683 44.719 -7.945 -1.192 -0.287 H46 8ND 86
8ND H47 H47 H 0 1 N N N N N N 37.587 55.820 43.670 -9.607 -0.873 1.524 H47 8ND 87
8ND H48 H48 H 0 1 N N N N N N 36.831 55.475 45.262 -10.201 0.600 0.720 H48 8ND 88
8ND H49 H49 H 0 1 N N N N N N 37.827 53.068 44.928 -10.813 -0.737 -1.276 H49 8ND 89
8ND H50 H50 H 0 1 N N N N N N 37.942 53.543 43.200 -10.219 -2.210 -0.472 H50 8ND 90
8ND H51 H51 H 0 1 N N N N N N 35.498 54.180 43.306 -11.882 -1.891 1.339 H51 8ND 91
8ND H52 H52 H 0 1 N N N N N N 35.447 53.450 44.947 -12.475 -0.418 0.535 H52 8ND 92
8ND H53 H53 H 0 1 N N N N N N 35.970 51.256 44.069 -13.087 -1.755 -1.461 H53 8ND 93
8ND H54 H54 H 0 1 N N N N N N 36.328 51.929 42.443 -12.493 -3.228 -0.657 H54 8ND 94
8ND H55 H55 H 0 1 N N N N N N 34.062 52.511 42.054 -14.156 -2.908 1.155 H55 8ND 95
8ND H56 H56 H 0 1 N N N N N N 33.637 52.361 43.793 -14.750 -1.436 0.351 H56 8ND 96
8ND H57 H57 H 0 1 N N N N N N 34.208 49.837 43.477 -15.361 -2.773 -1.646 H57 8ND 97
8ND H58 H58 H 0 1 N N N N N N 34.050 50.187 41.722 -14.768 -4.245 -0.842 H58 8ND 98
8ND H59 H59 H 0 1 N N N N N N 31.821 51.443 42.882 -16.430 -3.926 0.970 H59 8ND 99
8ND H60 H60 H 0 1 N N N N N N 31.832 49.894 41.973 -17.024 -2.454 0.166 H60 8ND 100
8ND H61 H61 H 0 1 N N N N N N 32.254 48.686 44.118 -17.636 -3.790 -1.831 H61 8ND 101
8ND H62 H62 H 0 1 N N N N N N 32.117 50.249 44.992 -17.042 -5.263 -1.027 H62 8ND 102
8ND H63 H63 H 0 1 N N N N N N 29.794 50.500 44.090 -18.704 -4.944 0.785 H63 8ND 103
8ND H64 H64 H 0 1 N N N N N N 29.943 48.876 43.339 -19.298 -3.471 -0.019 H64 8ND 104
8ND H65 H65 H 0 1 N N N N N N 28.770 48.757 45.510 -19.910 -4.808 -2.016 H65 8ND 105
8ND H66 H66 H 0 1 N N N N N N 30.337 47.881 45.568 -19.316 -6.281 -1.212 H66 8ND 106
8ND H67 H67 H 0 1 N N N N N N 30.188 49.505 46.319 -20.732 -5.420 -0.561 H67 8ND 107
8ND C4 C36 C 0 1 N N N N N N ? ? ? 1.527 5.778 -2.164 C4 8ND 108
8ND C5 C37 C 0 1 N N N N N N ? ? ? 2.936 5.952 -2.733 C5 8ND 109
8ND N1 N1 N 0 1 N N N N N N ? ? ? 3.462 4.645 -3.148 N1 8ND 110
8ND H68 H68 H 0 1 N N N N N N ? ? ? 0.901 5.267 -2.896 H68 8ND 111
8ND H69 H69 H 0 1 N N N N N N ? ? ? 1.101 6.757 -1.942 H69 8ND 112
8ND H70 H70 H 0 1 N N N N N N ? ? ? 2.901 6.620 -3.593 H70 8ND 113
8ND H71 H71 H 0 1 N N N N N N ? ? ? 3.586 6.379 -1.968 H71 8ND 114
8ND H72 H72 H 0 1 N N N N N N ? ? ? 4.418 4.722 -3.460 H72 8ND 115
8ND H73 H73 H 0 1 N N N N N N ? ? ? 3.378 3.969 -2.404 H73 8ND 116
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8ND C41 C42 SING N N 1
8ND C41 C40 SING N N 2
8ND C42 C43 SING N N 3
8ND C40 C39 SING N N 4
8ND C39 C38 SING N N 5
8ND C38 C37 SING N N 6
8ND C43 C44 SING N N 7
8ND C37 C36 SING N N 8
8ND C44 C45 SING N N 9
8ND C36 C35 SING N N 10
8ND C34 C35 SING N N 11
8ND C34 C33 SING N N 12
8ND C32 C33 SING N N 13
8ND C32 C31 SING N N 14
8ND O5 C30 DOUB N N 15
8ND C30 C31 SING N N 16
8ND C30 O3 SING N N 17
8ND O3 C3 SING N N 18
8ND C15 C14 SING N N 19
8ND C15 C16 SING N N 20
8ND C13 C14 SING N N 21
8ND C13 C12 SING N N 22
8ND C11 C12 SING N N 23
8ND C11 C10 SING N N 24
8ND C17 C16 SING N N 25
8ND C17 C18 SING N N 26
8ND C3 C2 SING N N 27
8ND O2 C10 SING N N 28
8ND O2 C2 SING N N 29
8ND C10 O4 DOUB N N 30
8ND C18 C19 SING N N 31
8ND C2 C1 SING N N 32
8ND C19 C20 SING N N 33
8ND C1 O3P SING N N 34
8ND C20 C21 SING N N 35
8ND C21 C22 SING N N 36
8ND C22 C23 SING N N 37
8ND C23 C24 SING N N 38
8ND C24 C25 SING N N 39
8ND C2 H1 SING N N 40
8ND C1 H2 SING N N 41
8ND C1 H3 SING N N 42
8ND C3 H4 SING N N 43
8ND C3 H5 SING N N 44
8ND C11 H6 SING N N 45
8ND C11 H7 SING N N 46
8ND C12 H8 SING N N 47
8ND C12 H9 SING N N 48
8ND C13 H10 SING N N 49
8ND C13 H11 SING N N 50
8ND C14 H12 SING N N 51
8ND C14 H13 SING N N 52
8ND C15 H14 SING N N 53
8ND C15 H15 SING N N 54
8ND C16 H16 SING N N 55
8ND C16 H17 SING N N 56
8ND C17 H18 SING N N 57
8ND C17 H19 SING N N 58
8ND C18 H20 SING N N 59
8ND C18 H21 SING N N 60
8ND C19 H22 SING N N 61
8ND C19 H23 SING N N 62
8ND C20 H24 SING N N 63
8ND C20 H25 SING N N 64
8ND C21 H26 SING N N 65
8ND C21 H27 SING N N 66
8ND C22 H28 SING N N 67
8ND C22 H29 SING N N 68
8ND C23 H30 SING N N 69
8ND C23 H31 SING N N 70
8ND C24 H32 SING N N 71
8ND C24 H33 SING N N 72
8ND C25 H34 SING N N 73
8ND C25 H35 SING N N 74
8ND C25 H36 SING N N 75
8ND C31 H37 SING N N 76
8ND C31 H38 SING N N 77
8ND C32 H39 SING N N 78
8ND C32 H40 SING N N 79
8ND C33 H41 SING N N 80
8ND C33 H42 SING N N 81
8ND C34 H43 SING N N 82
8ND C34 H44 SING N N 83
8ND C35 H45 SING N N 84
8ND C35 H46 SING N N 85
8ND C36 H47 SING N N 86
8ND C36 H48 SING N N 87
8ND C37 H49 SING N N 88
8ND C37 H50 SING N N 89
8ND C38 H51 SING N N 90
8ND C38 H52 SING N N 91
8ND C39 H53 SING N N 92
8ND C39 H54 SING N N 93
8ND C40 H55 SING N N 94
8ND C40 H56 SING N N 95
8ND C41 H57 SING N N 96
8ND C41 H58 SING N N 97
8ND C42 H59 SING N N 98
8ND C42 H60 SING N N 99
8ND C43 H61 SING N N 100
8ND C43 H62 SING N N 101
8ND C44 H63 SING N N 102
8ND C44 H64 SING N N 103
8ND C45 H65 SING N N 104
8ND C45 H66 SING N N 105
8ND C45 H67 SING N N 106
8ND O3P C4 SING N N 107
8ND C4 C5 SING N N 108
8ND C5 N1 SING N N 109
8ND C4 H68 SING N N 110
8ND C4 H69 SING N N 111
8ND C5 H70 SING N N 112
8ND C5 H71 SING N N 113
8ND N1 H72 SING N N 114
8ND N1 H73 SING N N 115
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8ND SMILES ACDLabs 12.01 C(COCCN)(COC(CCCCCCCCCCCCCCC)=O)OC(=O)CCCCCCCCCCCCCCC
8ND InChI InChI 1.03 InChI=1S/C37H73NO5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-36(39)42-34-35(33-41-32-31-38)43-37(40)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h35H,3-34,38H2,1-2H3/t35-/m0/s1
8ND InChIKey InChI 1.03 UWTLPHGXKLBELN-DHUJRADRSA-N
8ND SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)OC[C@H](COCCN)OC(=O)CCCCCCCCCCCCCCC
8ND SMILES CACTVS 3.385 CCCCCCCCCCCCCCCC(=O)OC[CH](COCCN)OC(=O)CCCCCCCCCCCCCCC
8ND SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCCCC(=O)OC[C@H](COCCN)OC(=O)CCCCCCCCCCCCCCC
8ND SMILES "OpenEye OEToolkits" 2.0.6 CCCCCCCCCCCCCCCC(=O)OCC(COCCN)OC(=O)CCCCCCCCCCCCCCC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8ND "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-3-(2-aminoethoxy)propane-1,2-diyl dihexadecanoate"
8ND "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S})-3-(2-azanylethoxy)-2-hexadecanoyloxy-propyl] hexadecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8ND 'Create component' 2017-02-21 RCSB
8ND 'Initial release' 2017-04-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8ND C2 C 26.383 2.107 1
8ND C1 C 26.383 0.608 2
8ND C3 C 25.084 2.857 3
8ND C10 C 28.981 2.107 4
8ND C11 C 30.280 2.857 5
8ND C12 C 31.579 2.107 6
8ND C13 C 32.878 2.857 7
8ND C14 C 34.177 2.107 8
8ND C15 C 35.476 2.857 9
8ND C16 C 36.775 2.107 10
8ND C17 C 38.074 2.857 11
8ND C18 C 39.373 2.107 12
8ND C19 C 40.672 2.857 13
8ND C20 C 41.971 2.107 14
8ND C21 C 43.270 2.857 15
8ND C22 C 44.569 2.107 16
8ND C23 C 45.868 2.857 17
8ND C24 C 47.167 2.107 18
8ND C25 C 48.466 2.857 19
8ND C30 C 22.486 2.857 20
8ND C31 C 21.187 2.107 21
8ND C32 C 19.887 2.857 22
8ND C33 C 18.588 2.107 23
8ND C34 C 17.290 2.857 24
8ND C35 C 15.990 2.107 25
8ND C36 C 14.691 2.857 26
8ND C37 C 13.392 2.107 27
8ND C38 C 12.093 2.857 28
8ND C39 C 10.794 2.107 29
8ND C40 C 9.495 2.857 30
8ND C41 C 8.196 2.107 31
8ND C42 C 6.897 2.857 32
8ND C43 C 5.598 2.107 33
8ND C44 C 4.299 2.857 34
8ND C45 C 3.000 2.107 35
8ND O4 O 28.981 0.608 36
8ND O5 O 22.486 4.357 37
8ND O2 O 27.682 2.857 38
8ND O3 O 23.785 2.107 39
8ND O3P O 25.084 -0.142 40
8ND C4 C 25.084 -1.643 41
8ND C5 C 23.785 -2.393 42
8ND N1 N 23.785 -3.893 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8ND C41 C42 SINGLE NONE 1
8ND C41 C40 SINGLE NONE 2
8ND C42 C43 SINGLE NONE 3
8ND C40 C39 SINGLE NONE 4
8ND C39 C38 SINGLE NONE 5
8ND C38 C37 SINGLE NONE 6
8ND C43 C44 SINGLE NONE 7
8ND C37 C36 SINGLE NONE 8
8ND C44 C45 SINGLE NONE 9
8ND C36 C35 SINGLE NONE 10
8ND C34 C35 SINGLE NONE 11
8ND C34 C33 SINGLE NONE 12
8ND C32 C33 SINGLE NONE 13
8ND C32 C31 SINGLE NONE 14
8ND O5 C30 DOUBLE NONE 15
8ND C30 C31 SINGLE NONE 16
8ND C30 O3 SINGLE NONE 17
8ND O3 C3 SINGLE NONE 18
8ND C15 C14 SINGLE NONE 19
8ND C15 C16 SINGLE NONE 20
8ND C13 C14 SINGLE NONE 21
8ND C13 C12 SINGLE NONE 22
8ND C11 C12 SINGLE NONE 23
8ND C11 C10 SINGLE NONE 24
8ND C17 C16 SINGLE NONE 25
8ND C17 C18 SINGLE NONE 26
8ND C2 C3 SINGLE BEGINWEDGE 27
8ND O2 C10 SINGLE NONE 28
8ND O2 C2 SINGLE NONE 29
8ND C10 O4 DOUBLE NONE 30
8ND C18 C19 SINGLE NONE 31
8ND C2 C1 SINGLE NONE 32
8ND C19 C20 SINGLE NONE 33
8ND C1 O3P SINGLE NONE 34
8ND C20 C21 SINGLE NONE 35
8ND C21 C22 SINGLE NONE 36
8ND C22 C23 SINGLE NONE 37
8ND C23 C24 SINGLE NONE 38
8ND C24 C25 SINGLE NONE 39
8ND O3P C4 SINGLE NONE 40
8ND C4 C5 SINGLE NONE 41
8ND C5 N1 SINGLE NONE 42
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 8ND
_pdbe_chem_comp_rdkit_properties.exactmw 611.549
_pdbe_chem_comp_rdkit_properties.amw 611.993
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 38
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 116
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.946
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 369.560
_pdbe_chem_comp_rdkit_properties.tpsa 87.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP 10.379
_pdbe_chem_comp_rdkit_properties.CrippenMR 181.336
_pdbe_chem_comp_rdkit_properties.chi0v 20.988
_pdbe_chem_comp_rdkit_properties.chi1v 10.107
_pdbe_chem_comp_rdkit_properties.chi2v 2.501
_pdbe_chem_comp_rdkit_properties.chi3v 2.501
_pdbe_chem_comp_rdkit_properties.chi4v 1.246
_pdbe_chem_comp_rdkit_properties.chi0n 93.988
_pdbe_chem_comp_rdkit_properties.chi1n 46.501
_pdbe_chem_comp_rdkit_properties.chi2n 2.501
_pdbe_chem_comp_rdkit_properties.chi3n 2.501
_pdbe_chem_comp_rdkit_properties.chi4n 1.246
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.140
_pdbe_chem_comp_rdkit_properties.kappa1 5.391
_pdbe_chem_comp_rdkit_properties.kappa2 35.340
_pdbe_chem_comp_rdkit_properties.kappa3 33.589
_pdbe_chem_comp_rdkit_properties.Phi 4.431
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8ND UniChem PDBe 8ND
8ND UniChem PubChem 137348728
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8ND C2 -0.355 -0.857 -1.077 ETKDGv3 1
8ND C1 0.013 -0.483 -2.520 ETKDGv3 2
8ND C3 0.335 0.079 -0.075 ETKDGv3 3
8ND C10 -2.478 -1.381 0.117 ETKDGv3 4
8ND C11 -3.949 -1.145 0.243 ETKDGv3 5
8ND C12 -4.215 0.134 1.046 ETKDGv3 6
8ND C13 -5.706 0.504 1.090 ETKDGv3 7
8ND C14 -6.533 -0.481 1.936 ETKDGv3 8
8ND C15 -7.958 0.026 2.212 ETKDGv3 9
8ND C16 -8.853 -0.022 0.962 ETKDGv3 10
8ND C17 -10.266 0.535 1.215 ETKDGv3 11
8ND C18 -11.097 -0.227 2.270 ETKDGv3 12
8ND C19 -11.268 -1.734 2.005 ETKDGv3 13
8ND C20 -11.992 -2.081 0.690 ETKDGv3 14
8ND C21 -13.496 -1.720 0.694 ETKDGv3 15
8ND C22 -13.826 -0.415 -0.053 ETKDGv3 16
8ND C23 -13.745 -0.575 -1.582 ETKDGv3 17
8ND C24 -14.159 0.702 -2.327 ETKDGv3 18
8ND C25 -13.119 1.816 -2.211 ETKDGv3 19
8ND C30 2.635 0.656 0.638 ETKDGv3 20
8ND C31 4.105 0.419 0.507 ETKDGv3 21
8ND C32 4.540 -0.746 1.402 ETKDGv3 22
8ND C33 6.008 -1.153 1.186 ETKDGv3 23
8ND C34 7.019 -0.075 1.631 ETKDGv3 24
8ND C35 7.602 0.701 0.437 ETKDGv3 25
8ND C36 8.433 1.919 0.870 ETKDGv3 26
8ND C37 9.743 1.523 1.568 ETKDGv3 27
8ND C38 10.607 2.760 1.860 ETKDGv3 28
8ND C39 11.957 2.389 2.509 ETKDGv3 29
8ND C40 13.143 2.429 1.531 ETKDGv3 30
8ND C41 13.053 1.354 0.439 ETKDGv3 31
8ND C42 14.326 1.330 -0.420 ETKDGv3 32
8ND C43 14.350 0.162 -1.422 ETKDGv3 33
8ND C44 13.216 0.177 -2.463 ETKDGv3 34
8ND C45 13.236 1.422 -3.350 ETKDGv3 35
8ND O4 -1.883 -2.097 0.968 ETKDGv3 36
8ND O5 2.205 1.479 1.493 ETKDGv3 37
8ND O2 -1.773 -0.769 -0.925 ETKDGv3 38
8ND O3 1.749 -0.073 -0.159 ETKDGv3 39
8ND O3P -0.686 -1.308 -3.434 ETKDGv3 40
8ND H1 -0.023 -1.901 -0.884 ETKDGv3 41
8ND H2 1.120 -0.507 -2.663 ETKDGv3 42
8ND H3 -0.301 0.566 -2.707 ETKDGv3 43
8ND H4 0.056 1.135 -0.288 ETKDGv3 44
8ND H5 0.005 -0.170 0.956 ETKDGv3 45
8ND H6 -4.415 -2.020 0.745 ETKDGv3 46
8ND H7 -4.387 -1.053 -0.775 ETKDGv3 47
8ND H8 -3.667 0.977 0.570 ETKDGv3 48
8ND H9 -3.823 0.020 2.081 ETKDGv3 49
8ND H10 -5.792 1.521 1.531 ETKDGv3 50
8ND H11 -6.101 0.550 0.053 ETKDGv3 51
8ND H12 -6.028 -0.628 2.915 ETKDGv3 52
8ND H13 -6.587 -1.470 1.431 ETKDGv3 53
8ND H14 -7.920 1.061 2.615 ETKDGv3 54
8ND H15 -8.395 -0.627 2.996 ETKDGv3 55
8ND H16 -8.397 0.599 0.162 ETKDGv3 56
8ND H17 -8.913 -1.059 0.571 ETKDGv3 57
8ND H18 -10.812 0.553 0.250 ETKDGv3 58
8ND H19 -10.177 1.595 1.541 ETKDGv3 59
8ND H20 -12.097 0.247 2.350 ETKDGv3 60
8ND H21 -10.626 -0.096 3.267 ETKDGv3 61
8ND H22 -11.830 -2.180 2.855 ETKDGv3 62
8ND H23 -10.273 -2.227 2.011 ETKDGv3 63
8ND H24 -11.912 -3.182 0.559 ETKDGv3 64
8ND H25 -11.457 -1.637 -0.173 ETKDGv3 65
8ND H26 -14.072 -2.551 0.230 ETKDGv3 66
8ND H27 -13.867 -1.636 1.738 ETKDGv3 67
8ND H28 -14.863 -0.119 0.216 ETKDGv3 68
8ND H29 -13.155 0.395 0.287 ETKDGv3 69
8ND H30 -12.720 -0.866 -1.895 ETKDGv3 70
8ND H31 -14.432 -1.393 -1.892 ETKDGv3 71
8ND H32 -15.140 1.066 -1.951 ETKDGv3 72
8ND H33 -14.284 0.455 -3.404 ETKDGv3 73
8ND H34 -13.057 2.192 -1.169 ETKDGv3 74
8ND H35 -13.412 2.664 -2.865 ETKDGv3 75
8ND H36 -12.120 1.452 -2.532 ETKDGv3 76
8ND H37 4.647 1.345 0.796 ETKDGv3 77
8ND H38 4.339 0.190 -0.555 ETKDGv3 78
8ND H39 3.904 -1.631 1.178 ETKDGv3 79
8ND H40 4.379 -0.480 2.470 ETKDGv3 80
8ND H41 6.168 -1.443 0.124 ETKDGv3 81
8ND H42 6.188 -2.069 1.791 ETKDGv3 82
8ND H43 6.550 0.627 2.355 ETKDGv3 83
8ND H44 7.854 -0.583 2.161 ETKDGv3 84
8ND H45 8.228 0.021 -0.181 ETKDGv3 85
8ND H46 6.777 1.066 -0.209 ETKDGv3 86
8ND H47 8.676 2.508 -0.042 ETKDGv3 87
8ND H48 7.828 2.569 1.540 ETKDGv3 88
8ND H49 9.513 1.017 2.530 ETKDGv3 89
8ND H50 10.301 0.812 0.925 ETKDGv3 90
8ND H51 10.044 3.416 2.561 ETKDGv3 91
8ND H52 10.768 3.345 0.928 ETKDGv3 92
8ND H53 12.169 3.128 3.313 ETKDGv3 93
8ND H54 11.908 1.394 3.004 ETKDGv3 94
8ND H55 13.208 3.436 1.062 ETKDGv3 95
8ND H56 14.074 2.272 2.118 ETKDGv3 96
8ND H57 12.185 1.582 -0.213 ETKDGv3 97
8ND H58 12.904 0.358 0.910 ETKDGv3 98
8ND H59 15.208 1.217 0.247 ETKDGv3 99
8ND H60 14.442 2.297 -0.953 ETKDGv3 100
8ND H61 15.326 0.173 -1.954 ETKDGv3 101
8ND H62 14.299 -0.796 -0.859 ETKDGv3 102
8ND H63 13.336 -0.715 -3.115 ETKDGv3 103
8ND H64 12.227 0.084 -1.968 ETKDGv3 104
8ND H65 12.951 2.322 -2.767 ETKDGv3 105
8ND H66 14.243 1.568 -3.794 ETKDGv3 106
8ND H67 12.501 1.299 -4.174 ETKDGv3 107
8ND C4 0.120 -2.397 -3.839 ETKDGv3 108
8ND C5 -0.711 -3.355 -4.689 ETKDGv3 109
8ND N1 -1.205 -2.681 -5.886 ETKDGv3 110
8ND H68 0.983 -2.036 -4.444 ETKDGv3 111
8ND H69 0.503 -2.962 -2.960 ETKDGv3 112
8ND H70 -0.088 -4.231 -4.977 ETKDGv3 113
8ND H71 -1.572 -3.721 -4.088 ETKDGv3 114
8ND H72 -1.828 -3.351 -6.393 ETKDGv3 115
8ND H73 -0.392 -2.497 -6.517 ETKDGv3 116
#