data_8RK
#
_chem_comp.id 8RK
_chem_comp.name "3-(5-chloranyl-6-methyl-2-oxidanylidene-1,3-benzoxazol-3-yl)propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H10 Cl N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-02-28
_chem_comp.pdbx_modified_date 2017-06-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 255.654
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8RK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NAB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8RK C4 C1 C 0 1 N N N N N N 8.918 -31.373 48.404 -0.939 2.265 -0.135 C4 8RK 1
8RK C5 C2 C 0 1 N N N N N N 9.097 -30.735 46.007 -2.074 0.101 -0.707 C5 8RK 2
8RK C6 C3 C 0 1 N N N N N N 10.285 -29.783 45.967 -2.724 -0.429 0.572 C6 8RK 3
8RK C7 C4 C 0 1 N N N N N N 10.207 -28.777 44.857 -3.910 -1.288 0.214 C7 8RK 4
8RK C8 C5 C 0 1 Y N N N N N 9.898 -32.916 47.083 0.394 0.501 -0.200 C8 8RK 5
8RK C10 C6 C 0 1 Y N N N N N 10.904 -34.951 46.381 2.365 -0.855 -0.081 C10 8RK 6
8RK CL CL1 CL 0 0 N N N N N N 11.477 -35.976 45.099 3.134 -2.406 -0.214 CL 8RK 7
8RK C1 C7 C 0 1 Y N N N N N 10.991 -35.400 47.702 3.115 0.262 0.246 C1 8RK 8
8RK C C8 C 0 1 N N N N N N 11.486 -36.779 48.061 4.596 0.127 0.487 C 8RK 9
8RK C9 C9 C 0 1 Y N N N N N 10.362 -33.716 46.039 1.005 -0.739 -0.303 C9 8RK 10
8RK C3 C10 C 0 1 Y N N N N N 9.986 -33.325 48.397 1.148 1.626 0.131 C3 8RK 11
8RK C2 C11 C 0 1 Y N N N N N 10.532 -34.555 48.710 2.511 1.500 0.353 C2 8RK 12
8RK N N1 N 0 1 N N N N N N 9.227 -31.691 47.111 -0.922 0.936 -0.359 N 8RK 13
8RK O1 O1 O 0 1 N N N N N N 8.360 -30.384 48.835 -1.926 2.973 -0.190 O1 8RK 14
8RK O O2 O 0 1 N N N N N N 9.378 -32.389 49.214 0.301 2.684 0.163 O 8RK 15
8RK O3 O3 O 0 1 N N N N N N 9.364 -28.806 43.973 -4.204 -1.459 -0.946 O3 8RK 16
8RK O2 O4 O 0 1 N N N N N N 11.150 -27.879 44.955 -4.639 -1.864 1.183 O2 8RK 17
8RK H1 H1 H 0 1 N N N N N N 8.174 -30.153 46.142 -1.743 -0.737 -1.321 H1 8RK 18
8RK H2 H2 H 0 1 N N N N N N 9.046 -31.287 45.057 -2.799 0.696 -1.264 H2 8RK 19
8RK H3 H3 H 0 1 N N N N N N 11.202 -30.376 45.836 -2.000 -1.024 1.128 H3 8RK 20
8RK H4 H4 H 0 1 N N N N N N 10.331 -29.243 46.924 -3.055 0.408 1.186 H4 8RK 21
8RK H5 H5 H 0 1 N N N N N N 12.571 -36.744 48.241 5.131 0.267 -0.453 H5 8RK 22
8RK H6 H6 H 0 1 N N N N N N 10.974 -37.127 48.971 4.918 0.882 1.204 H6 8RK 23
8RK H7 H7 H 0 1 N N N N N N 11.274 -37.472 47.233 4.811 -0.866 0.882 H7 8RK 24
8RK H8 H8 H 0 1 N N N N N N 10.303 -33.391 45.011 0.421 -1.611 -0.556 H8 8RK 25
8RK H9 H9 H 0 1 N N N N N N 10.603 -34.863 49.743 3.100 2.368 0.609 H9 8RK 26
8RK H10 H10 H 0 1 N N N N N N 11.075 -27.261 44.238 -5.390 -2.406 0.904 H10 8RK 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8RK O3 C7 DOUB N N 1
8RK C7 O2 SING N N 2
8RK C7 C6 SING N N 3
8RK CL C10 SING N N 4
8RK C6 C5 SING N N 5
8RK C5 N SING N N 6
8RK C9 C10 DOUB Y N 7
8RK C9 C8 SING Y N 8
8RK C10 C1 SING Y N 9
8RK C8 N SING N N 10
8RK C8 C3 DOUB Y N 11
8RK N C4 SING N N 12
8RK C1 C SING N N 13
8RK C1 C2 DOUB Y N 14
8RK C3 C2 SING Y N 15
8RK C3 O SING N N 16
8RK C4 O1 DOUB N N 17
8RK C4 O SING N N 18
8RK C5 H1 SING N N 19
8RK C5 H2 SING N N 20
8RK C6 H3 SING N N 21
8RK C6 H4 SING N N 22
8RK C H5 SING N N 23
8RK C H6 SING N N 24
8RK C H7 SING N N 25
8RK C9 H8 SING N N 26
8RK C2 H9 SING N N 27
8RK O2 H10 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8RK InChI InChI 1.03 InChI=1S/C11H10ClNO4/c1-6-4-9-8(5-7(6)12)13(11(16)17-9)3-2-10(14)15/h4-5H,2-3H2,1H3,(H,14,15)
8RK InChIKey InChI 1.03 QPMPFAMMRAXUAV-UHFFFAOYSA-N
8RK SMILES_CANONICAL CACTVS 3.385 Cc1cc2OC(=O)N(CCC(O)=O)c2cc1Cl
8RK SMILES CACTVS 3.385 Cc1cc2OC(=O)N(CCC(O)=O)c2cc1Cl
8RK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1cc2c(cc1Cl)N(C(=O)O2)CCC(=O)O
8RK SMILES "OpenEye OEToolkits" 2.0.6 Cc1cc2c(cc1Cl)N(C(=O)O2)CCC(=O)O
#
_pdbx_chem_comp_identifier.comp_id 8RK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "3-(5-chloranyl-6-methyl-2-oxidanylidene-1,3-benzoxazol-3-yl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8RK 'Create component' 2017-02-28 EBI
8RK 'Initial release' 2017-06-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8RK C4 C 9.192 -2.031 1
8RK C5 C 8.783 0.602 2
8RK C6 C 10.250 0.912 3
8RK C7 C 10.716 2.337 4
8RK C8 C 6.897 -1.281 5
8RK C10 C 4.299 -1.281 6
8RK CL Cl 3.000 -0.531 7
8RK C1 C 4.299 -2.781 8
8RK C C 3.000 -3.531 9
8RK C9 C 5.598 -0.531 10
8RK C3 C 6.897 -2.781 11
8RK C2 C 5.598 -3.531 12
8RK N N 8.316 -0.824 13
8RK O1 O 10.692 -2.031 14
8RK O O 8.316 -3.238 15
8RK O3 O 12.184 2.647 16
8RK O2 O 9.714 3.454 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8RK O3 C7 DOUBLE NONE 1
8RK C7 O2 SINGLE NONE 2
8RK C7 C6 SINGLE NONE 3
8RK CL C10 SINGLE NONE 4
8RK C6 C5 SINGLE NONE 5
8RK C5 N SINGLE NONE 6
8RK C9 C10 SINGLE NONE 7
8RK C9 C8 DOUBLE NONE 8
8RK C10 C1 DOUBLE NONE 9
8RK C8 N SINGLE NONE 10
8RK C8 C3 SINGLE NONE 11
8RK N C4 SINGLE NONE 12
8RK C1 C SINGLE NONE 13
8RK C1 C2 SINGLE NONE 14
8RK C3 C2 DOUBLE NONE 15
8RK C3 O SINGLE NONE 16
8RK C4 O1 DOUBLE NONE 17
8RK C4 O SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8RK MurckoScaffold S1 scaffold 'O=c1[nH]c2ccccc2o1' InChI=1S/C7H5NO2/c9-7-8-5-3-1-2-4-6(5)10-7/h1-4H,(H,8,9) ASSKVPFEZFQQNQ-UHFFFAOYSA-N
8RK benzoxazole F1 fragment c1ccc2ocnc2c1 InChI=1S/C7H5NO/c1-2-4-7-6(3-1)8-5-9-7/h1-5H BCMCBBGGLRIHSE-UHFFFAOYSA-N
8RK oxazole F2 fragment c1cocn1 InChI=1S/C3H3NO/c1-2-5-3-4-1/h1-3H ZCQWOFVYLHDMMC-UHFFFAOYSA-N
8RK phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8RK C4 S1 1
8RK C8 S1 1
8RK C10 S1 1
8RK C1 S1 1
8RK C9 S1 1
8RK C3 S1 1
8RK C2 S1 1
8RK N S1 1
8RK O1 S1 1
8RK O S1 1
8RK C3 F1 1
8RK O F1 1
8RK C4 F1 1
8RK N F1 1
8RK C8 F1 1
8RK C9 F1 1
8RK C10 F1 1
8RK C1 F1 1
8RK C2 F1 1
8RK C3 F2 1
8RK C8 F2 1
8RK N F2 1
8RK C4 F2 1
8RK O F2 1
8RK C8 F3 1
8RK C9 F3 1
8RK C10 F3 1
8RK C1 F3 1
8RK C2 F3 1
8RK C3 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8RK
_pdbe_chem_comp_rdkit_properties.exactmw 255.030
_pdbe_chem_comp_rdkit_properties.amw 255.657
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 115.354
_pdbe_chem_comp_rdkit_properties.tpsa 72.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.448
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.110
_pdbe_chem_comp_rdkit_properties.chi0v 8.714
_pdbe_chem_comp_rdkit_properties.chi1v 4.508
_pdbe_chem_comp_rdkit_properties.chi2v 2.050
_pdbe_chem_comp_rdkit_properties.chi3v 2.050
_pdbe_chem_comp_rdkit_properties.chi4v 1.246
_pdbe_chem_comp_rdkit_properties.chi0n 17.958
_pdbe_chem_comp_rdkit_properties.chi1n 9.039
_pdbe_chem_comp_rdkit_properties.chi2n 1.767
_pdbe_chem_comp_rdkit_properties.chi3n 1.767
_pdbe_chem_comp_rdkit_properties.chi4n 1.109
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.750
_pdbe_chem_comp_rdkit_properties.kappa1 4.494
_pdbe_chem_comp_rdkit_properties.kappa2 4.254
_pdbe_chem_comp_rdkit_properties.kappa3 2.190
_pdbe_chem_comp_rdkit_properties.Phi 1.125
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8RK UniChem ChEMBL CHEMBL3634598
8RK UniChem PDBe 8RK
8RK UniChem ZINC ZINC000473155236
8RK UniChem SureChEMBL SCHEMBL16836354
8RK UniChem PubChem 118174579
8RK UniChem BindingDb 50131814
8RK UniChem BRENDA 219610
8RK UniChem BRENDA 220932
8RK UniChem BRENDA 220946
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8RK C4 0.403 -2.468 0.360 ETKDGv3 1
8RK C5 2.208 -0.639 0.647 ETKDGv3 2
8RK C6 2.544 -0.229 -0.788 ETKDGv3 3
8RK C7 3.940 0.300 -0.868 ETKDGv3 4
8RK C8 -0.364 -0.393 0.662 ETKDGv3 5
8RK C10 -1.924 1.455 0.724 ETKDGv3 6
8RK CL -2.163 3.180 0.987 ETKDGv3 7
8RK C1 -2.962 0.627 0.410 ETKDGv3 8
8RK C -4.363 1.150 0.272 ETKDGv3 9
8RK C9 -0.542 0.915 0.856 ETKDGv3 10
8RK C3 -1.455 -1.269 0.317 ETKDGv3 11
8RK C2 -2.706 -0.830 0.190 ETKDGv3 12
8RK N 0.841 -1.150 0.723 ETKDGv3 13
8RK O1 1.185 -3.446 0.233 ETKDGv3 14
8RK O -0.974 -2.557 0.136 ETKDGv3 15
8RK O3 4.899 -0.481 -1.108 ETKDGv3 16
8RK O2 4.184 1.649 -0.633 ETKDGv3 17
8RK H1 2.316 0.233 1.327 ETKDGv3 18
8RK H2 2.914 -1.427 0.989 ETKDGv3 19
8RK H3 2.438 -1.106 -1.464 ETKDGv3 20
8RK H4 1.837 0.558 -1.128 ETKDGv3 21
8RK H5 -5.073 0.334 0.024 ETKDGv3 22
8RK H6 -4.689 1.615 1.226 ETKDGv3 23
8RK H7 -4.405 1.907 -0.540 ETKDGv3 24
8RK H8 0.287 1.564 1.105 ETKDGv3 25
8RK H9 -3.503 -1.512 -0.076 ETKDGv3 26
8RK H10 5.126 2.021 -0.667 ETKDGv3 27
#