data_8SP
#
_chem_comp.id 8SP
_chem_comp.name O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C22 H42 N O10 P"
_chem_comp.mon_nstd_parent_comp_id SER
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-01-22
_chem_comp.pdbx_modified_date 2013-02-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.543
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8SP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2LYB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8SP N N N 0 1 N N N N N N -7.482 -26.781 4.650 1.977 3.075 2.247 N 8SP 1
8SP P P P 0 1 N N N N N N -2.907 -25.842 6.651 0.442 1.993 -1.733 P 8SP 2
8SP OG OG O 0 1 N N N N N N -4.477 -25.566 6.534 1.395 2.203 -0.453 OG 8SP 3
8SP C1A C1A C 0 1 N N N N N N -2.147 -30.210 2.325 1.663 -2.359 -1.046 C1A 8SP 4
8SP O1A O1A O 0 1 N N N N N N -3.299 -30.245 2.822 1.853 -3.391 -1.644 O1A 8SP 5
8SP C1B C1B C 0 1 N N N N N N 0.436 -25.533 2.323 -3.670 -1.125 -0.964 C1B 8SP 6
8SP O1B O1B O 0 1 N N N N N N 0.525 -25.725 1.087 -4.250 -0.974 -2.013 O1B 8SP 7
8SP CB CB C 0 1 N N N N N N -5.284 -26.455 5.731 2.065 3.433 -0.174 CB 8SP 8
8SP C1G C1G C 0 1 N N N N N N -2.013 -27.717 2.172 -0.439 -2.238 -2.162 C1G 8SP 9
8SP O1G O1G O 0 1 N N N N N N -1.645 -29.053 1.809 0.522 -1.676 -1.229 O1G 8SP 10
8SP C2A C2A C 0 1 N N N N N N -1.270 -31.400 2.292 2.708 -1.837 -0.093 C2A 8SP 11
8SP C2B C2B C 0 1 N N N N N N 1.520 -24.882 3.091 -4.438 -1.100 0.333 C2B 8SP 12
8SP CA CA C 0 1 N N S N N N -6.530 -25.760 5.125 2.883 3.289 1.110 CA 8SP 13
8SP C2G C2G C 0 1 N N R N N N -1.147 -27.210 3.351 -1.667 -1.328 -2.239 C2G 8SP 14
8SP O2G O2G O 0 1 N N N N N N -0.693 -25.889 3.004 -2.341 -1.315 -0.953 O2G 8SP 15
8SP O2P O2P O 0 1 N N N N N N -2.195 -24.808 7.405 -0.610 3.035 -1.741 O2P 8SP 16
8SP C3A C3A C 0 1 N N N N N N -1.655 -32.546 3.268 3.900 -2.796 -0.069 C3A 8SP 17
8SP C3B C3B C 0 1 N N N N N N 2.165 -23.639 2.413 -5.923 -0.869 0.041 C3B 8SP 18
8SP C C C 0 1 N N N N N N -6.206 -24.857 4.004 3.686 4.544 1.338 C 8SP 19
8SP O O O 0 1 N N N N N N -5.119 -24.238 3.962 3.297 5.376 2.123 OXT 8SP 20
8SP OXT OXT O 0 1 N Y N N N N -7.115 -24.705 2.911 4.833 4.737 0.669 O 8SP 21
8SP C3G C3G C 0 1 N N N N N N -1.891 -27.252 4.715 -1.227 0.093 -2.597 C3G 8SP 22
8SP O3G O3G O 0 1 N N N N N N -2.318 -25.942 5.164 -0.245 0.539 -1.660 O3G 8SP 23
8SP O3P O3P O 0 1 N N N N N N -2.678 -27.373 7.400 1.318 2.105 -3.079 O3P 8SP 24
8SP C4A C4A C 0 1 N N N N N N -0.693 -33.760 3.162 4.961 -2.266 0.899 C4A 8SP 25
8SP C4B C4B C 0 1 N N N N N N 3.712 -23.604 2.561 -6.702 -0.844 1.357 C4B 8SP 26
8SP C5A C5A C 0 1 N N N N N N -0.895 -34.788 4.306 6.153 -3.225 0.922 C5A 8SP 27
8SP C5B C5B C 0 1 N N N N N N 4.312 -22.210 2.234 -8.187 -0.613 1.066 C5B 8SP 28
8SP C6A C6A C 0 1 N N N N N N -0.037 -34.463 5.559 7.214 -2.696 1.890 C6A 8SP 29
8SP C6B C6B C 0 1 N N N N N N 4.974 -22.149 0.831 -8.967 -0.588 2.382 C6B 8SP 30
8SP C7A C7A C 0 1 N N N N N N -0.768 -34.804 6.886 8.406 -3.654 1.913 C7A 8SP 31
8SP C7B C7B C 0 1 N N N N N N 4.222 -21.201 -0.142 -10.451 -0.357 2.091 C7B 8SP 32
8SP C8A C8A C 0 1 N N N N N N 0.043 -34.397 8.136 9.467 -3.125 2.881 C8A 8SP 33
8SP C8B C8B C 0 1 N N N N N N 5.163 -20.221 -0.880 -11.231 -0.332 3.408 C8B 8SP 34
8SP HB3 HB3 H 0 1 N N N N N N -4.665 -26.844 4.909 2.730 3.681 -1.002 HB3 8SP 35
8SP HB2 HB2 H 0 1 N N N N N N -5.621 -27.290 6.363 1.329 4.228 -0.049 HB2 8SP 36
8SP H11G H11G H 0 0 N N N N N N -1.867 -27.055 1.306 0.016 -2.318 -3.149 H11G 8SP 37
8SP H21G H21G H 0 0 N N N N N N -3.072 -27.703 2.470 -0.742 -3.227 -1.820 H21G 8SP 38
8SP H H H 0 1 N N N N N N -8.286 -26.332 4.259 1.341 3.851 2.353 H 8SP 39
8SP H12A H12A H 0 0 N N N N N N -1.289 -31.806 1.270 3.040 -0.852 -0.421 H12A 8SP 40
8SP H22A H22A H 0 0 N N N N N N -0.249 -31.074 2.539 2.282 -1.762 0.908 H22A 8SP 41
8SP H12B H12B H 0 0 N N N N N N 1.106 -24.564 4.059 -4.313 -2.052 0.848 H12B 8SP 42
8SP H22B H22B H 0 0 N N N N N N 2.312 -25.627 3.258 -4.062 -0.294 0.962 H22B 8SP 43
8SP HA HA H 0 1 N N N N N N -7.009 -25.174 5.923 3.558 2.438 1.018 HA 8SP 44
8SP H2G H2G H 0 1 N N N N N N -0.275 -27.876 3.431 -2.348 -1.701 -3.003 H2G 8SP 45
8SP H2 H2 H 0 1 N Y N N N N -7.043 -27.346 3.951 1.474 2.206 2.149 H2 8SP 46
8SP H13A H13A H 0 0 N N N N N N -1.624 -32.159 4.297 3.568 -3.781 0.259 H13A 8SP 47
8SP H23A H23A H 0 0 N N N N N N -2.676 -32.882 3.033 4.326 -2.871 -1.069 H23A 8SP 48
8SP H13B H13B H 0 0 N N N N N N 1.915 -23.654 1.342 -6.048 0.083 -0.474 H13B 8SP 49
8SP H23B H23B H 0 0 N N N N N N 1.748 -22.732 2.874 -6.299 -1.676 -0.588 H23B 8SP 50
8SP H13G H13G H 0 0 N N N N N N -2.778 -27.894 4.612 -0.800 0.099 -3.601 H13G 8SP 51
8SP H23G H23G H 0 0 N N N N N N -1.215 -27.679 5.471 -2.089 0.760 -2.565 H23G 8SP 52
8SP H14A H14A H 0 0 N N N N N N -0.869 -34.265 2.201 5.293 -1.281 0.570 H14A 8SP 53
8SP H24A H24A H 0 0 N N N N N N 0.343 -33.392 3.199 4.535 -2.192 1.899 H24A 8SP 54
8SP H14B H14B H 0 0 N N N N N N 3.973 -23.865 3.597 -6.577 -1.796 1.873 H14B 8SP 55
8SP H24B H24B H 0 0 N N N N N N 4.148 -24.345 1.875 -6.326 -0.038 1.987 H24B 8SP 56
8SP H15A H15A H 0 0 N N N N N N -1.956 -34.788 4.596 5.821 -4.210 1.250 H15A 8SP 57
8SP H25A H25A H 0 0 N N N N N N -0.615 -35.786 3.937 6.579 -3.300 -0.078 H25A 8SP 58
8SP H15B H15B H 0 0 N N N N N N 3.505 -21.463 2.274 -8.312 0.339 0.551 H15B 8SP 59
8SP H25B H25B H 0 0 N N N N N N 5.073 -21.969 2.991 -8.563 -1.420 0.437 H25B 8SP 60
8SP H16A H16A H 0 0 N N N N N N 0.894 -35.046 5.510 7.546 -1.711 1.561 H16A 8SP 61
8SP H26A H26A H 0 0 N N N N N N 0.202 -33.389 5.554 6.788 -2.621 2.890 H26A 8SP 62
8SP H16B H16B H 0 0 N N N N N N 6.008 -21.790 0.944 -8.841 -1.540 2.898 H16B 8SP 63
8SP H26B H26B H 0 0 N N N N N N 4.982 -23.161 0.401 -8.590 0.218 3.012 H26B 8SP 64
8SP H17A H17A H 0 0 N N N N N N -1.731 -34.273 6.903 8.074 -4.639 2.242 H17A 8SP 65
8SP H27A H27A H 0 0 N N N N N N -0.947 -35.889 6.920 8.832 -3.729 0.913 H27A 8SP 66
8SP H17B H17B H 0 0 N N N N N N 3.696 -21.812 -0.890 -10.576 0.595 1.576 H17B 8SP 67
8SP H27B H27B H 0 0 N N N N N N 3.490 -20.617 0.434 -10.827 -1.164 1.462 H27B 8SP 68
8SP H18A H18A H 0 0 N N N N N N -0.522 -34.662 9.042 9.041 -3.050 3.881 H18A 8SP 69
8SP H28A H28A H 0 0 N N N N N N 1.007 -34.928 8.136 10.316 -3.808 2.898 H28A 8SP 70
8SP H38A H38A H 0 0 N N N N N N 0.222 -33.312 8.119 9.799 -2.140 2.553 H38A 8SP 71
8SP H18B H18B H 0 0 N N N N N N 4.572 -19.580 -1.551 -10.854 0.474 4.037 H18B 8SP 72
8SP H28B H28B H 0 0 N N N N N N 5.690 -19.595 -0.145 -12.288 -0.168 3.200 H28B 8SP 73
8SP H38B H38B H 0 0 N N N N N N 5.896 -20.791 -1.469 -11.105 -1.284 3.923 H38B 8SP 74
8SP HXT HXT H 0 1 N Y N N N N -6.740 -24.117 2.266 5.313 5.557 0.849 HXT 8SP 75
8SP H42 H42 H 0 1 N N N N N N -2.130 -27.271 8.169 2.028 1.452 -3.142 H42 8SP 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8SP N CA SING N N 1
8SP N H SING N N 2
8SP N H2 SING N N 3
8SP P OG SING N N 4
8SP P O2P DOUB N N 5
8SP P O3G SING N N 6
8SP P O3P SING N N 7
8SP OG CB SING N N 8
8SP C1A O1A DOUB N N 9
8SP C1A O1G SING N N 10
8SP C1A C2A SING N N 11
8SP C1B O1B DOUB N N 12
8SP C1B C2B SING N N 13
8SP C1B O2G SING N N 14
8SP CB CA SING N N 15
8SP CB HB3 SING N N 16
8SP CB HB2 SING N N 17
8SP C1G O1G SING N N 18
8SP C1G C2G SING N N 19
8SP C1G H11G SING N N 20
8SP C1G H21G SING N N 21
8SP C2A C3A SING N N 22
8SP C2A H12A SING N N 23
8SP C2A H22A SING N N 24
8SP C2B C3B SING N N 25
8SP C2B H12B SING N N 26
8SP C2B H22B SING N N 27
8SP CA C SING N N 28
8SP CA HA SING N N 29
8SP C2G O2G SING N N 30
8SP C2G C3G SING N N 31
8SP C2G H2G SING N N 32
8SP C3A C4A SING N N 33
8SP C3A H13A SING N N 34
8SP C3A H23A SING N N 35
8SP C3B C4B SING N N 36
8SP C3B H13B SING N N 37
8SP C3B H23B SING N N 38
8SP C O DOUB N N 39
8SP C OXT SING N N 40
8SP C3G O3G SING N N 41
8SP C3G H13G SING N N 42
8SP C3G H23G SING N N 43
8SP C4A C5A SING N N 44
8SP C4A H14A SING N N 45
8SP C4A H24A SING N N 46
8SP C4B C5B SING N N 47
8SP C4B H14B SING N N 48
8SP C4B H24B SING N N 49
8SP C5A C6A SING N N 50
8SP C5A H15A SING N N 51
8SP C5A H25A SING N N 52
8SP C5B C6B SING N N 53
8SP C5B H15B SING N N 54
8SP C5B H25B SING N N 55
8SP C6A C7A SING N N 56
8SP C6A H16A SING N N 57
8SP C6A H26A SING N N 58
8SP C6B C7B SING N N 59
8SP C6B H16B SING N N 60
8SP C6B H26B SING N N 61
8SP C7A C8A SING N N 62
8SP C7A H17A SING N N 63
8SP C7A H27A SING N N 64
8SP C7B C8B SING N N 65
8SP C7B H17B SING N N 66
8SP C7B H27B SING N N 67
8SP C8A H18A SING N N 68
8SP C8A H28A SING N N 69
8SP C8A H38A SING N N 70
8SP C8B H18B SING N N 71
8SP C8B H28B SING N N 72
8SP C8B H38B SING N N 73
8SP OXT HXT SING N N 74
8SP O3P H42 SING N N 75
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8SP SMILES ACDLabs 12.01 O=C(OC(COP(=O)(OCC(C(=O)O)N)O)COC(=O)CCCCCCC)CCCCCCC
8SP InChI InChI 1.03 InChI=1S/C22H42NO10P/c1-3-5-7-9-11-13-20(24)30-15-18(33-21(25)14-12-10-8-6-4-2)16-31-34(28,29)32-17-19(23)22(26)27/h18-19H,3-17,23H2,1-2H3,(H,26,27)(H,28,29)/t18-,19+/m1/s1
8SP InChIKey InChI 1.03 TWOCGGYLNFTSJO-MOPGFXCFSA-N
8SP SMILES_CANONICAL CACTVS 3.370 CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCC
8SP SMILES CACTVS 3.370 CCCCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCC
8SP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCC
8SP SMILES "OpenEye OEToolkits" 1.7.6 CCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCCCC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8SP "SYSTEMATIC NAME" ACDLabs 12.01 O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
8SP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-3-[[(2R)-2,3-di(octanoyloxy)propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8SP 'Create component' 2013-01-22 RCSB
8SP 'Modify atom id' 2013-01-24 RCSB
8SP 'Initial release' 2013-02-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8SP N N 6.404 -6.893 1
8SP P P 10.301 -4.643 2
8SP OG O 9.002 -5.393 3
8SP C1A C 15.497 -0.142 4
8SP O1A O 14.198 0.608 5
8SP C1B C 16.796 -3.893 6
8SP O1B O 16.796 -2.393 7
8SP CB C 7.702 -4.643 8
8SP C1G C 14.198 -2.393 9
8SP O1G O 15.497 -1.643 10
8SP C2A C 16.796 0.608 11
8SP C2B C 18.095 -4.643 12
8SP CA C 6.404 -5.393 13
8SP C2G C 14.198 -3.893 14
8SP O2G O 15.497 -4.643 15
8SP O2P O 9.551 -3.344 16
8SP C3A C 16.796 2.107 17
8SP C3B C 19.394 -3.893 18
8SP C C 5.104 -4.643 19
8SP O O 3.805 -5.393 20
8SP OXT O 5.104 -3.143 21
8SP C3G C 12.899 -4.643 22
8SP O3G O 11.600 -3.893 23
8SP O3P O 11.051 -5.941 24
8SP C4A C 18.095 2.857 25
8SP C4B C 20.693 -4.643 26
8SP C5A C 18.095 4.357 27
8SP C5B C 21.992 -3.893 28
8SP C6A C 19.394 5.107 29
8SP C6B C 23.291 -4.643 30
8SP C7A C 19.394 6.607 31
8SP C7B C 24.590 -3.893 32
8SP C8A C 20.693 7.357 33
8SP C8B C 25.889 -4.643 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8SP CA N SINGLE BEGINDASH 1
8SP P OG SINGLE NONE 2
8SP P O2P DOUBLE NONE 3
8SP P O3G SINGLE NONE 4
8SP P O3P SINGLE BEGINWEDGE 5
8SP OG CB SINGLE NONE 6
8SP C1A O1A DOUBLE NONE 7
8SP C1A O1G SINGLE NONE 8
8SP C1A C2A SINGLE NONE 9
8SP C1B O1B DOUBLE NONE 10
8SP C1B C2B SINGLE NONE 11
8SP C1B O2G SINGLE NONE 12
8SP CB CA SINGLE NONE 13
8SP C1G O1G SINGLE NONE 14
8SP C2G C1G SINGLE BEGINWEDGE 15
8SP C2A C3A SINGLE NONE 16
8SP C2B C3B SINGLE NONE 17
8SP CA C SINGLE NONE 18
8SP C2G O2G SINGLE NONE 19
8SP C2G C3G SINGLE NONE 20
8SP C3A C4A SINGLE NONE 21
8SP C3B C4B SINGLE NONE 22
8SP C O DOUBLE NONE 23
8SP C OXT SINGLE NONE 24
8SP C3G O3G SINGLE NONE 25
8SP C4A C5A SINGLE NONE 26
8SP C4B C5B SINGLE NONE 27
8SP C5A C6A SINGLE NONE 28
8SP C5B C6B SINGLE NONE 29
8SP C6A C7A SINGLE NONE 30
8SP C6B C7B SINGLE NONE 31
8SP C7A C8A SINGLE NONE 32
8SP C7B C8B SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8SP peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
8SP phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8SP O F1 1
8SP C F1 1
8SP CA F1 1
8SP N F1 1
8SP OG F2 1
8SP P F2 1
8SP O2P F2 1
8SP O3G F2 1
8SP O3P F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8SP
_pdbe_chem_comp_rdkit_properties.exactmw 511.255
_pdbe_chem_comp_rdkit_properties.amw 511.549
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 26
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.864
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 261.118
_pdbe_chem_comp_rdkit_properties.tpsa 171.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.708
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.932
_pdbe_chem_comp_rdkit_properties.chi0v 16.871
_pdbe_chem_comp_rdkit_properties.chi1v 8.956
_pdbe_chem_comp_rdkit_properties.chi2v 2.588
_pdbe_chem_comp_rdkit_properties.chi3v 2.588
_pdbe_chem_comp_rdkit_properties.chi4v 1.338
_pdbe_chem_comp_rdkit_properties.chi0n 57.977
_pdbe_chem_comp_rdkit_properties.chi1n 28.206
_pdbe_chem_comp_rdkit_properties.chi2n 1.958
_pdbe_chem_comp_rdkit_properties.chi3n 1.958
_pdbe_chem_comp_rdkit_properties.chi4n 0.908
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 5.961
_pdbe_chem_comp_rdkit_properties.kappa2 19.751
_pdbe_chem_comp_rdkit_properties.kappa3 18.857
_pdbe_chem_comp_rdkit_properties.Phi 3.463
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8SP UniChem PDBe 8SP
8SP UniChem ChEBI 65246
8SP UniChem SureChEMBL SCHEMBL314019
8SP UniChem PubChem 9547084
8SP UniChem LipidMaps LMGP03010021
8SP UniChem MetaboLights MTBLC65246
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8SP N -3.079 5.318 1.818 ETKDGv3 1
8SP P -0.099 4.500 -2.093 ETKDGv3 2
8SP OG -1.343 5.461 -1.430 ETKDGv3 3
8SP C1A 2.741 -1.170 -0.256 ETKDGv3 4
8SP O1A 2.591 -1.711 0.874 ETKDGv3 5
8SP C1B -2.882 1.105 -1.060 ETKDGv3 6
8SP O1B -2.912 1.167 -2.319 ETKDGv3 7
8SP CB -1.687 4.935 -0.169 ETKDGv3 8
8SP C1G 0.489 -0.148 -0.150 ETKDGv3 9
8SP O1G 1.725 -0.393 -0.816 ETKDGv3 10
8SP C2A 4.000 -1.402 -1.029 ETKDGv3 11
8SP C2B -4.147 1.266 -0.277 ETKDGv3 12
8SP CA -2.773 5.807 0.472 ETKDGv3 13
8SP C2G -0.413 0.732 -1.020 ETKDGv3 14
8SP O2G -1.687 0.836 -0.382 ETKDGv3 15
8SP O2P 0.143 4.946 -3.516 ETKDGv3 16
8SP C3A 3.829 -2.589 -1.986 ETKDGv3 17
8SP C3B -4.871 -0.072 -0.086 ETKDGv3 18
8SP C -4.015 5.844 -0.381 ETKDGv3 19
8SP O -4.672 4.790 -0.598 ETKDGv3 20
8SP OXT -4.435 7.048 -0.937 ETKDGv3 21
8SP C3G 0.192 2.132 -1.200 ETKDGv3 22
8SP O3G -0.586 2.862 -2.117 ETKDGv3 23
8SP O3P 1.328 4.729 -1.206 ETKDGv3 24
8SP C4A 5.107 -2.870 -2.804 ETKDGv3 25
8SP C4B -4.084 -1.041 0.810 ETKDGv3 26
8SP C5A 5.900 -4.097 -2.314 ETKDGv3 27
8SP C5B -4.891 -2.318 1.085 ETKDGv3 28
8SP C6A 6.492 -3.961 -0.901 ETKDGv3 29
8SP C6B -4.068 -3.405 1.799 ETKDGv3 30
8SP C7A 7.598 -2.899 -0.819 ETKDGv3 31
8SP C7B -3.543 -3.009 3.190 ETKDGv3 32
8SP C8A 8.222 -2.864 0.573 ETKDGv3 33
8SP C8B -4.661 -2.701 4.185 ETKDGv3 34
8SP HB3 -0.802 4.934 0.508 ETKDGv3 35
8SP HB2 -2.077 3.897 -0.266 ETKDGv3 36
8SP H11G 0.679 0.349 0.827 ETKDGv3 37
8SP H21G -0.022 -1.117 0.038 ETKDGv3 38
8SP H -3.785 5.955 2.254 ETKDGv3 39
8SP H12A 4.238 -0.484 -1.610 ETKDGv3 40
8SP H22A 4.835 -1.583 -0.322 ETKDGv3 41
8SP H12B -3.917 1.721 0.711 ETKDGv3 42
8SP H22B -4.821 1.966 -0.817 ETKDGv3 43
8SP HA -2.372 6.841 0.561 ETKDGv3 44
8SP H2G -0.521 0.237 -2.012 ETKDGv3 45
8SP H2 -3.511 4.366 1.757 ETKDGv3 46
8SP H13A 3.004 -2.348 -2.692 ETKDGv3 47
8SP H23A 3.516 -3.493 -1.418 ETKDGv3 48
8SP H13B -5.056 -0.540 -1.078 ETKDGv3 49
8SP H23B -5.859 0.133 0.383 ETKDGv3 50
8SP H13G 0.215 2.622 -0.199 ETKDGv3 51
8SP H23G 1.230 2.039 -1.592 ETKDGv3 52
8SP H14A 4.802 -3.082 -3.852 ETKDGv3 53
8SP H24A 5.763 -1.976 -2.859 ETKDGv3 54
8SP H14B -3.853 -0.534 1.771 ETKDGv3 55
8SP H24B -3.129 -1.315 0.311 ETKDGv3 56
8SP H15A 6.725 -4.299 -3.032 ETKDGv3 57
8SP H25A 5.233 -4.986 -2.335 ETKDGv3 58
8SP H15B -5.800 -2.073 1.675 ETKDGv3 59
8SP H25B -5.236 -2.740 0.115 ETKDGv3 60
8SP H16A 5.689 -3.744 -0.166 ETKDGv3 61
8SP H26A 6.926 -4.946 -0.622 ETKDGv3 62
8SP H16B -4.697 -4.317 1.898 ETKDGv3 63
8SP H26B -3.201 -3.679 1.158 ETKDGv3 64
8SP H17A 7.185 -1.893 -1.041 ETKDGv3 65
8SP H27A 8.392 -3.126 -1.563 ETKDGv3 66
8SP H17B -2.949 -3.859 3.589 ETKDGv3 67
8SP H27B -2.855 -2.140 3.117 ETKDGv3 68
8SP H18A 8.679 -3.847 0.816 ETKDGv3 69
8SP H28A 9.014 -2.087 0.606 ETKDGv3 70
8SP H38A 7.451 -2.618 1.334 ETKDGv3 71
8SP H18B -4.227 -2.576 5.200 ETKDGv3 72
8SP H28B -5.177 -1.756 3.914 ETKDGv3 73
8SP H38B -5.397 -3.532 4.214 ETKDGv3 74
8SP HXT -5.265 7.091 -1.515 ETKDGv3 75
8SP H42 1.443 5.712 -1.161 ETKDGv3 76
#