data_8V9
#
_chem_comp.id 8V9
_chem_comp.name
(4R)-3-[(2S,3S)-3-[[(2R)-2-[2-(4-hydroxyphenyl)ethanoylamino]-3-methylsulfanyl-propanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H44 N4 O7 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-04
_chem_comp.pdbx_modified_date 2018-07-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 720.898
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8V9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5YIA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8V9 C34 C1 C 0 1 Y N N N N N 22.871 -20.351 -25.626 -8.209 2.015 -1.075 C34 8V9 1
8V9 C35 C2 C 0 1 Y N N N N N 20.850 -18.950 -27.117 -10.205 0.196 -0.465 C35 8V9 2
8V9 C36 C3 C 0 1 Y N N N N N 22.399 -19.178 -25.188 -9.457 2.467 -0.692 C36 8V9 3
8V9 C37 C4 C 0 1 Y N N N N N 21.310 -18.429 -25.991 -10.459 1.557 -0.386 C37 8V9 4
8V9 C32 C5 C 0 1 Y N N N N N 22.336 -20.958 -26.932 -7.960 0.658 -1.159 C32 8V9 5
8V9 C27 C6 C 0 1 Y N N N N N 16.303 -22.950 -27.810 -0.340 2.445 -2.515 C27 8V9 6
8V9 C28 C7 C 0 1 Y N N N N N 15.521 -22.099 -27.160 -1.562 3.023 -2.226 C28 8V9 7
8V9 C30 C8 C 0 1 N N N N N N 22.886 -22.324 -27.459 -6.597 0.168 -1.577 C30 8V9 8
8V9 C29 C9 C 0 1 N N N N N N 21.815 -23.461 -27.310 -5.729 -0.003 -0.357 C29 8V9 9
8V9 C10 C10 C 0 1 N N N N N N 12.304 -23.114 -18.387 8.764 1.316 -0.284 C10 8V9 10
8V9 S01 S1 S 0 1 N N N N N N 19.359 -26.149 -19.766 2.933 -3.813 -1.450 S01 8V9 11
8V9 S02 S2 S 0 1 N N N N N N 23.119 -27.542 -26.573 -5.610 -2.123 1.787 S02 8V9 12
8V9 O01 O1 O 0 1 N N N N N N 12.573 -25.467 -18.329 8.033 0.004 -2.217 O01 8V9 13
8V9 O02 O2 O 0 1 N N N N N N 16.799 -24.033 -20.090 3.850 0.419 -0.590 O02 8V9 14
8V9 O03 O3 O 0 1 N N N N N N 17.772 -28.489 -24.630 0.978 -0.610 3.140 O03 8V9 15
8V9 O04 O4 O 0 1 N N N N N N 16.051 -27.946 -22.604 3.350 -0.648 2.056 O04 8V9 16
8V9 O05 O5 O 0 1 N N N N N N 20.246 -24.763 -24.374 -1.867 -0.280 -0.855 O05 8V9 17
8V9 O06 O6 O 0 1 N N N N N N 20.741 -23.418 -27.834 -6.173 0.248 0.743 O06 8V9 18
8V9 O07 O7 O 0 1 N N N N N N 20.796 -17.192 -25.527 -11.688 1.999 -0.010 O07 8V9 19
8V9 N01 N1 N 0 1 N N N N N N 17.509 -26.492 -21.534 2.859 -1.862 0.265 N01 8V9 20
8V9 N02 N2 N 0 1 N N N N N N 14.857 -25.002 -19.397 5.987 -0.178 -0.574 N02 8V9 21
8V9 N03 N3 N 0 1 N N N N N N 18.810 -26.080 -25.670 -1.201 -0.604 1.236 N03 8V9 22
8V9 N04 N4 N 0 1 N N N N N N 22.157 -24.621 -26.502 -4.459 -0.435 -0.489 N04 8V9 23
8V9 C01 C11 C 0 1 N N R N N N 16.775 -26.424 -20.280 4.228 -1.882 -0.228 C01 8V9 24
8V9 C02 C12 C 0 1 N N N N N N 17.788 -26.941 -19.234 4.392 -2.691 -1.534 C02 8V9 25
8V9 C03 C13 C 0 1 N N S N N N 14.276 -23.835 -18.991 6.420 1.201 -0.816 C03 8V9 26
8V9 C04 C14 C 0 1 N N N N N N 18.778 -25.694 -21.423 1.881 -2.586 -0.570 C04 8V9 27
8V9 C05 C15 C 0 1 N N N N N N 16.194 -25.034 -19.957 4.674 -0.464 -0.477 C05 8V9 28
8V9 C06 C16 C 0 1 N N R N N N 13.162 -24.098 -18.043 7.808 1.215 -1.492 C06 8V9 29
8V9 C07 C17 C 0 1 N N N N N N 17.927 -28.468 -19.402 5.699 -3.487 -1.528 C07 8V9 30
8V9 C08 C18 C 0 1 N N N N N N 17.462 -26.542 -17.777 4.313 -1.779 -2.760 C08 8V9 31
8V9 C09 C19 C 0 1 Y N N N N N 13.498 -23.131 -20.294 6.611 1.929 0.497 C09 8V9 32
8V9 C11 C20 C 0 1 Y N N N N N 12.220 -22.715 -19.733 7.958 1.996 0.803 C11 8V9 33
8V9 C12 C21 C 0 1 N N N N N N 17.081 -27.330 -22.666 2.510 -1.229 1.403 C12 8V9 34
8V9 C13 C22 C 0 1 N N S N N N 17.981 -27.333 -23.920 1.075 -1.243 1.863 C13 8V9 35
8V9 C14 C23 C 0 1 N N S N N N 17.694 -26.045 -24.746 0.208 -0.488 0.853 C14 8V9 36
8V9 C15 C24 C 0 1 Y N N N N N 13.723 -22.910 -21.603 5.681 2.490 1.355 C15 8V9 37
8V9 C16 C25 C 0 1 Y N N N N N 11.200 -21.995 -20.752 8.370 2.623 1.966 C16 8V9 38
8V9 C17 C26 C 0 1 N N N N N N 16.344 -26.106 -25.470 0.613 0.987 0.835 C17 8V9 39
8V9 C18 C27 C 0 1 Y N N N N N 12.927 -22.337 -22.396 6.094 3.115 2.516 C18 8V9 40
8V9 C19 C28 C 0 1 Y N N N N N 11.684 -21.849 -22.159 7.440 3.182 2.822 C19 8V9 41
8V9 C20 C29 C 0 1 Y N N N N N 16.041 -24.677 -26.062 -0.154 1.706 -0.245 C20 8V9 42
8V9 C22 C30 C 0 1 N N R N N N 21.192 -25.669 -26.366 -3.615 -0.602 0.697 C22 8V9 43
8V9 C23 C31 C 0 1 Y N N N N N 15.136 -23.699 -25.309 -1.377 2.283 0.043 C23 8V9 44
8V9 C24 C32 C 0 1 Y N N N N N 16.583 -24.339 -27.210 0.364 1.786 -1.524 C24 8V9 45
8V9 C25 C33 C 0 1 N N N N N N 21.816 -26.830 -25.650 -3.866 -1.980 1.312 C25 8V9 46
8V9 C26 C34 C 0 1 Y N N N N N 14.894 -22.488 -25.837 -2.080 2.942 -0.948 C26 8V9 47
8V9 C31 C35 C 0 1 N N N N N N 22.589 -27.976 -28.201 -5.708 -3.795 2.484 C31 8V9 48
8V9 C33 C36 C 0 1 Y N N N N N 21.395 -20.305 -27.630 -8.958 -0.251 -0.859 C33 8V9 49
8V9 C21 C37 C 0 1 N N N N N N 20.065 -25.383 -25.375 -2.166 -0.484 0.303 C21 8V9 50
8V9 H1 H1 H 0 1 N N N N N N 23.629 -20.872 -25.060 -7.429 2.723 -1.314 H1 8V9 51
8V9 H2 H2 H 0 1 N N N N N N 20.091 -18.428 -27.681 -10.983 -0.514 -0.228 H2 8V9 52
8V9 H3 H3 H 0 1 N N N N N N 22.780 -18.753 -24.271 -9.653 3.527 -0.631 H3 8V9 53
8V9 H4 H4 H 0 1 N N N N N N 16.741 -22.669 -28.756 0.063 2.504 -3.515 H4 8V9 54
8V9 H5 H5 H 0 1 N N N N N N 15.330 -21.121 -27.577 -2.112 3.538 -3.000 H5 8V9 55
8V9 H6 H6 H 0 1 N N N N N N 23.782 -22.597 -26.882 -6.697 -0.789 -2.089 H6 8V9 56
8V9 H7 H7 H 0 1 N N N N N N 23.152 -22.218 -28.521 -6.140 0.894 -2.249 H7 8V9 57
8V9 H8 H8 H 0 1 N N N N N N 12.586 -22.224 -17.805 9.071 0.322 0.040 H8 8V9 58
8V9 H9 H9 H 0 1 N N N N N N 11.299 -23.445 -18.087 9.636 1.916 -0.541 H9 8V9 59
8V9 H10 H10 H 0 1 N N N N N N 11.860 -25.638 -17.725 8.922 -0.073 -2.588 H10 8V9 60
8V9 H11 H11 H 0 1 N N N N N N 17.014 -28.943 -24.280 1.270 0.312 3.146 H11 8V9 61
8V9 H12 H12 H 0 1 N N N N N N 21.225 -16.956 -24.713 -11.785 2.126 0.944 H12 8V9 62
8V9 H13 H13 H 0 1 N N N N N N 14.347 -25.857 -19.306 6.645 -0.884 -0.483 H13 8V9 63
8V9 H14 H14 H 0 1 N N N N N N 18.722 -26.590 -26.526 -1.440 -0.766 2.162 H14 8V9 64
8V9 H15 H15 H 0 1 N N N N N N 23.047 -24.685 -26.051 -4.104 -0.637 -1.369 H15 8V9 65
8V9 H16 H16 H 0 1 N N N N N N 15.939 -27.137 -20.318 4.869 -2.321 0.536 H16 8V9 66
8V9 H17 H17 H 0 1 N N N N N N 14.994 -23.114 -18.574 5.692 1.722 -1.437 H17 8V9 67
8V9 H18 H18 H 0 1 N N N N N N 19.504 -25.986 -22.196 1.402 -1.910 -1.278 H18 8V9 68
8V9 H19 H19 H 0 1 N N N N N N 18.580 -24.614 -21.495 1.139 -3.088 0.051 H19 8V9 69
8V9 H20 H20 H 0 1 N N N N N N 13.505 -24.033 -17.000 7.916 2.081 -2.145 H20 8V9 70
8V9 H21 H21 H 0 1 N N N N N N 18.646 -28.855 -18.664 5.733 -4.136 -2.403 H21 8V9 71
8V9 H22 H22 H 0 1 N N N N N N 16.948 -28.945 -19.245 6.543 -2.798 -1.552 H22 8V9 72
8V9 H23 H23 H 0 1 N N N N N N 18.286 -28.694 -20.417 5.750 -4.093 -0.624 H23 8V9 73
8V9 H24 H24 H 0 1 N N N N N N 18.231 -26.950 -17.104 3.396 -1.191 -2.717 H24 8V9 74
8V9 H25 H25 H 0 1 N N N N N N 17.445 -25.445 -17.692 5.173 -1.109 -2.770 H25 8V9 75
8V9 H26 H26 H 0 1 N N N N N N 16.478 -26.947 -17.498 4.313 -2.385 -3.665 H26 8V9 76
8V9 H27 H27 H 0 1 N N N N N N 19.026 -27.284 -23.581 0.728 -2.274 1.940 H27 8V9 77
8V9 H28 H28 H 0 1 N N N N N N 17.738 -25.161 -24.093 0.350 -0.916 -0.140 H28 8V9 78
8V9 H29 H29 H 0 1 N N N N N N 14.664 -23.252 -22.008 4.629 2.439 1.117 H29 8V9 79
8V9 H30 H30 H 0 1 N N N N N N 10.229 -21.641 -20.439 9.422 2.675 2.206 H30 8V9 80
8V9 H31 H31 H 0 1 N N N N N N 15.553 -26.391 -24.761 0.387 1.437 1.802 H31 8V9 81
8V9 H32 H32 H 0 1 N N N N N N 16.390 -26.845 -26.284 1.682 1.068 0.637 H32 8V9 82
8V9 H33 H33 H 0 1 N N N N N N 13.286 -22.218 -23.408 5.366 3.552 3.183 H33 8V9 83
8V9 H34 H34 H 0 1 N N N N N N 11.086 -21.388 -22.931 7.765 3.670 3.728 H34 8V9 84
8V9 H35 H35 H 0 1 N N N N N N 20.782 -25.981 -27.338 -3.858 0.171 1.427 H35 8V9 85
8V9 H36 H36 H 0 1 N N N N N N 14.697 -23.980 -24.363 -1.782 2.220 1.042 H36 8V9 86
8V9 H37 H37 H 0 1 N N N N N N 17.224 -25.035 -27.732 1.319 1.335 -1.749 H37 8V9 87
8V9 H38 H38 H 0 1 N N N N N N 21.045 -27.595 -25.474 -3.238 -2.104 2.194 H38 8V9 88
8V9 H39 H39 H 0 1 N N N N N N 22.213 -26.481 -24.685 -3.623 -2.753 0.582 H39 8V9 89
8V9 H40 H40 H 0 1 N N N N N N 14.252 -21.791 -25.318 -3.035 3.395 -0.722 H40 8V9 90
8V9 H41 H41 H 0 1 N N N N N N 23.429 -28.420 -28.755 -5.420 -4.522 1.724 H41 8V9 91
8V9 H42 H42 H 0 1 N N N N N N 21.767 -28.704 -28.137 -5.034 -3.873 3.336 H42 8V9 92
8V9 H43 H43 H 0 1 N N N N N N 22.240 -27.074 -28.726 -6.730 -3.994 2.808 H43 8V9 93
8V9 H44 H44 H 0 1 N N N N N N 21.017 -20.725 -28.551 -8.759 -1.311 -0.921 H44 8V9 94
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8V9 C31 S02 SING N N 1
8V9 O06 C29 DOUB N N 2
8V9 C27 C24 DOUB Y N 3
8V9 C27 C28 SING Y N 4
8V9 C33 C35 DOUB Y N 5
8V9 C33 C32 SING Y N 6
8V9 C30 C29 SING N N 7
8V9 C30 C32 SING N N 8
8V9 C29 N04 SING N N 9
8V9 C24 C20 SING Y N 10
8V9 C28 C26 DOUB Y N 11
8V9 C35 C37 SING Y N 12
8V9 C32 C34 DOUB Y N 13
8V9 S02 C25 SING N N 14
8V9 N04 C22 SING N N 15
8V9 C22 C25 SING N N 16
8V9 C22 C21 SING N N 17
8V9 C20 C17 SING N N 18
8V9 C20 C23 DOUB Y N 19
8V9 C37 O07 SING N N 20
8V9 C37 C36 DOUB Y N 21
8V9 C26 C23 SING Y N 22
8V9 N03 C21 SING N N 23
8V9 N03 C14 SING N N 24
8V9 C34 C36 SING Y N 25
8V9 C17 C14 SING N N 26
8V9 C21 O05 DOUB N N 27
8V9 C14 C13 SING N N 28
8V9 O03 C13 SING N N 29
8V9 C13 C12 SING N N 30
8V9 C12 O04 DOUB N N 31
8V9 C12 N01 SING N N 32
8V9 C18 C19 DOUB Y N 33
8V9 C18 C15 SING Y N 34
8V9 C19 C16 SING Y N 35
8V9 C15 C09 DOUB Y N 36
8V9 N01 C04 SING N N 37
8V9 N01 C01 SING N N 38
8V9 C04 S01 SING N N 39
8V9 C16 C11 DOUB Y N 40
8V9 C09 C11 SING Y N 41
8V9 C09 C03 SING N N 42
8V9 C01 C05 SING N N 43
8V9 C01 C02 SING N N 44
8V9 O02 C05 DOUB N N 45
8V9 C05 N02 SING N N 46
8V9 S01 C02 SING N N 47
8V9 C11 C10 SING N N 48
8V9 C07 C02 SING N N 49
8V9 N02 C03 SING N N 50
8V9 C02 C08 SING N N 51
8V9 C03 C06 SING N N 52
8V9 C10 C06 SING N N 53
8V9 O01 C06 SING N N 54
8V9 C34 H1 SING N N 55
8V9 C35 H2 SING N N 56
8V9 C36 H3 SING N N 57
8V9 C27 H4 SING N N 58
8V9 C28 H5 SING N N 59
8V9 C30 H6 SING N N 60
8V9 C30 H7 SING N N 61
8V9 C10 H8 SING N N 62
8V9 C10 H9 SING N N 63
8V9 O01 H10 SING N N 64
8V9 O03 H11 SING N N 65
8V9 O07 H12 SING N N 66
8V9 N02 H13 SING N N 67
8V9 N03 H14 SING N N 68
8V9 N04 H15 SING N N 69
8V9 C01 H16 SING N N 70
8V9 C03 H17 SING N N 71
8V9 C04 H18 SING N N 72
8V9 C04 H19 SING N N 73
8V9 C06 H20 SING N N 74
8V9 C07 H21 SING N N 75
8V9 C07 H22 SING N N 76
8V9 C07 H23 SING N N 77
8V9 C08 H24 SING N N 78
8V9 C08 H25 SING N N 79
8V9 C08 H26 SING N N 80
8V9 C13 H27 SING N N 81
8V9 C14 H28 SING N N 82
8V9 C15 H29 SING N N 83
8V9 C16 H30 SING N N 84
8V9 C17 H31 SING N N 85
8V9 C17 H32 SING N N 86
8V9 C18 H33 SING N N 87
8V9 C19 H34 SING N N 88
8V9 C22 H35 SING N N 89
8V9 C23 H36 SING N N 90
8V9 C24 H37 SING N N 91
8V9 C25 H38 SING N N 92
8V9 C25 H39 SING N N 93
8V9 C26 H40 SING N N 94
8V9 C31 H41 SING N N 95
8V9 C31 H42 SING N N 96
8V9 C31 H43 SING N N 97
8V9 C33 H44 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8V9 InChI InChI 1.03 InChI=1S/C37H44N4O7S2/c1-37(2)33(35(47)40-31-26-12-8-7-11-24(26)19-29(31)43)41(21-50-37)36(48)32(45)27(17-22-9-5-4-6-10-22)39-34(46)28(20-49-3)38-30(44)18-23-13-15-25(42)16-14-23/h4-16,27-29,31-33,42-43,45H,17-21H2,1-3H3,(H,38,44)(H,39,46)(H,40,47)/t27-,28-,29+,31-,32-,33+/m0/s1
8V9 InChIKey InChI 1.03 OONNUXMESNYHOP-ACUZRORGSA-N
8V9 SMILES_CANONICAL CACTVS 3.385 CSC[C@H](NC(=O)Cc1ccc(O)cc1)C(=O)N[C@@H](Cc2ccccc2)[C@H](O)C(=O)N3CSC(C)(C)[C@H]3C(=O)N[C@@H]4[C@H](O)Cc5ccccc45
8V9 SMILES CACTVS 3.385 CSC[CH](NC(=O)Cc1ccc(O)cc1)C(=O)N[CH](Cc2ccccc2)[CH](O)C(=O)N3CSC(C)(C)[CH]3C(=O)N[CH]4[CH](O)Cc5ccccc45
8V9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC1([C@H](N(CS1)C(=O)[C@H]([C@H](Cc2ccccc2)NC(=O)[C@H](CSC)NC(=O)Cc3ccc(cc3)O)O)C(=O)N[C@H]4c5ccccc5C[C@H]4O)C
8V9 SMILES "OpenEye OEToolkits" 2.0.6 CC1(C(N(CS1)C(=O)C(C(Cc2ccccc2)NC(=O)C(CSC)NC(=O)Cc3ccc(cc3)O)O)C(=O)NC4c5ccccc5CC4O)C
#
_pdbx_chem_comp_identifier.comp_id 8V9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
(4~{R})-3-[(2~{S},3~{S})-3-[[(2~{R})-2-[2-(4-hydroxyphenyl)ethanoylamino]-3-methylsulfanyl-propanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-~{N}-[(1~{S},2~{R})-2-oxidanyl-2,3-dihydro-1~{H}-inden-1-yl]-1,3-thiazolidine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8V9 'Create component' 2017-10-04 PDBJ
8V9 'Initial release' 2018-07-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8V9 C34 C 6.018 6.391 1
8V9 C35 C 7.522 8.987 2
8V9 C36 C 5.270 7.692 3
8V9 C37 C 6.022 8.989 4
8V9 C32 C 7.518 6.389 5
8V9 C27 C 3.752 -2.698 6
8V9 C28 C 3.000 -3.996 7
8V9 C30 C 8.266 5.088 8
8V9 C29 C 7.513 3.791 9
8V9 C10 C 10.480 -10.802 10
8V9 S01 S 14.309 -3.265 11
8V9 S02 S 5.261 2.495 12
8V9 O01 O 12.855 -9.594 13
8V9 O02 O 13.415 -7.769 14
8V9 O03 O 10.505 -1.411 15
8V9 O04 O 9.748 -5.306 16
8V9 O05 O 9.757 -0.110 17
8V9 O06 O 6.013 3.793 18
8V9 O07 O 5.275 10.290 19
8V9 N01 N 12.000 -4.011 20
8V9 N02 N 10.946 -6.962 21
8V9 N03 N 7.505 -1.405 22
8V9 N04 N 8.261 2.490 23
8V9 C01 C 12.880 -5.226 24
8V9 C02 C 14.307 -4.765 25
8V9 C03 C 10.480 -8.387 26
8V9 C04 C 12.884 -2.799 27
8V9 C05 C 12.414 -6.652 28
8V9 C06 C 11.355 -9.594 29
8V9 C07 C 15.807 -4.768 30
8V9 C08 C 14.768 -6.193 31
8V9 C09 C 9.060 -8.844 32
8V9 C11 C 9.060 -10.344 33
8V9 C12 C 10.500 -4.009 34
8V9 C13 C 9.752 -2.708 35
8V9 C14 C 8.252 -2.706 36
8V9 C15 C 7.761 -8.094 37
8V9 C16 C 7.761 -11.094 38
8V9 C17 C 7.500 -4.003 39
8V9 C18 C 6.463 -8.844 40
8V9 C19 C 6.463 -10.344 41
8V9 C20 C 6.000 -4.001 42
8V9 C22 C 7.509 1.193 43
8V9 C23 C 5.248 -5.299 44
8V9 C24 C 5.252 -2.701 45
8V9 C25 C 6.009 1.195 46
8V9 C26 C 3.748 -5.296 47
8V9 C31 C 3.761 2.498 48
8V9 C33 C 8.270 7.686 49
8V9 C21 C 8.257 -0.108 50
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8V9 C31 S02 SINGLE NONE 1
8V9 O06 C29 DOUBLE NONE 2
8V9 C27 C24 DOUBLE NONE 3
8V9 C27 C28 SINGLE NONE 4
8V9 C33 C35 DOUBLE NONE 5
8V9 C33 C32 SINGLE NONE 6
8V9 C30 C29 SINGLE NONE 7
8V9 C30 C32 SINGLE NONE 8
8V9 C29 N04 SINGLE NONE 9
8V9 C24 C20 SINGLE NONE 10
8V9 C28 C26 DOUBLE NONE 11
8V9 C35 C37 SINGLE NONE 12
8V9 C32 C34 DOUBLE NONE 13
8V9 S02 C25 SINGLE NONE 14
8V9 N04 C22 SINGLE NONE 15
8V9 C22 C25 SINGLE BEGINDASH 16
8V9 C22 C21 SINGLE NONE 17
8V9 C20 C17 SINGLE NONE 18
8V9 C20 C23 DOUBLE NONE 19
8V9 C37 O07 SINGLE NONE 20
8V9 C37 C36 DOUBLE NONE 21
8V9 C26 C23 SINGLE NONE 22
8V9 N03 C21 SINGLE NONE 23
8V9 N03 C14 SINGLE NONE 24
8V9 C34 C36 SINGLE NONE 25
8V9 C14 C17 SINGLE BEGINDASH 26
8V9 C21 O05 DOUBLE NONE 27
8V9 C14 C13 SINGLE NONE 28
8V9 C13 O03 SINGLE BEGINDASH 29
8V9 C13 C12 SINGLE NONE 30
8V9 C12 O04 DOUBLE NONE 31
8V9 C12 N01 SINGLE NONE 32
8V9 C18 C19 DOUBLE NONE 33
8V9 C18 C15 SINGLE NONE 34
8V9 C19 C16 SINGLE NONE 35
8V9 C15 C09 DOUBLE NONE 36
8V9 N01 C04 SINGLE NONE 37
8V9 N01 C01 SINGLE NONE 38
8V9 C04 S01 SINGLE NONE 39
8V9 C16 C11 DOUBLE NONE 40
8V9 C09 C11 SINGLE NONE 41
8V9 C09 C03 SINGLE NONE 42
8V9 C01 C05 SINGLE BEGINWEDGE 43
8V9 C01 C02 SINGLE NONE 44
8V9 O02 C05 DOUBLE NONE 45
8V9 C05 N02 SINGLE NONE 46
8V9 S01 C02 SINGLE NONE 47
8V9 C11 C10 SINGLE NONE 48
8V9 C07 C02 SINGLE NONE 49
8V9 C03 N02 SINGLE BEGINDASH 50
8V9 C02 C08 SINGLE NONE 51
8V9 C03 C06 SINGLE NONE 52
8V9 C10 C06 SINGLE NONE 53
8V9 C06 O01 SINGLE BEGINDASH 54
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8V9 MurckoScaffold S1 scaffold 'O=C(Cc1ccccc1)NCC(=O)N[C@H](CC(=O)N1CSC[C@H]1C(=O)N[C@@H]1CCc2ccccc21)Cc1ccccc1' InChI=1S/C33H36N4O4S/c38-30(18-24-11-5-2-6-12-24)34-20-31(39)35-26(17-23-9-3-1-4-10-23)19-32(40)37-22-42-21-29(37)33(41)36-28-16-15-25-13-7-8-14-27(25)28/h1-14,26,28-29H,15-22H2,(H,34,38)(H,35,39)(H,36,41)/t26-,28+,29-/m0/s1 ZKSJJECNSKEVDZ-MKYKQAKUSA-N
8V9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8V9 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
8V9 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8V9 Z419084966 F4 fragment NCC(O)Cc1ccccc1 InChI=1S/C9H13NO/c10-7-9(11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 JIIXMZQZEAAIJX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8V9 C34 S1 1
8V9 C35 S1 1
8V9 C36 S1 1
8V9 C37 S1 1
8V9 C32 S1 1
8V9 C27 S1 1
8V9 C28 S1 1
8V9 C30 S1 1
8V9 C29 S1 1
8V9 C10 S1 1
8V9 S01 S1 1
8V9 O02 S1 1
8V9 O04 S1 1
8V9 O05 S1 1
8V9 O06 S1 1
8V9 N01 S1 1
8V9 N02 S1 1
8V9 N03 S1 1
8V9 N04 S1 1
8V9 C01 S1 1
8V9 C02 S1 1
8V9 C03 S1 1
8V9 C04 S1 1
8V9 C05 S1 1
8V9 C06 S1 1
8V9 C09 S1 1
8V9 C11 S1 1
8V9 C12 S1 1
8V9 C13 S1 1
8V9 C14 S1 1
8V9 C15 S1 1
8V9 C16 S1 1
8V9 C17 S1 1
8V9 C18 S1 1
8V9 C19 S1 1
8V9 C20 S1 1
8V9 C22 S1 1
8V9 C23 S1 1
8V9 C24 S1 1
8V9 C26 S1 1
8V9 C33 S1 1
8V9 C21 S1 1
8V9 N01 F1 1
8V9 C12 F1 1
8V9 O04 F1 1
8V9 C13 F1 1
8V9 N02 F1 2
8V9 C05 F1 2
8V9 O02 F1 2
8V9 C01 F1 2
8V9 N03 F1 3
8V9 C21 F1 3
8V9 O05 F1 3
8V9 C22 F1 3
8V9 N04 F1 4
8V9 C29 F1 4
8V9 O06 F1 4
8V9 C30 F1 4
8V9 O02 F2 1
8V9 C05 F2 1
8V9 C01 F2 1
8V9 N01 F2 1
8V9 O05 F2 2
8V9 C21 F2 2
8V9 C22 F2 2
8V9 N04 F2 2
8V9 C34 F3 1
8V9 C32 F3 1
8V9 C33 F3 1
8V9 C35 F3 1
8V9 C37 F3 1
8V9 C36 F3 1
8V9 C27 F3 2
8V9 C24 F3 2
8V9 C20 F3 2
8V9 C23 F3 2
8V9 C26 F3 2
8V9 C28 F3 2
8V9 C09 F3 3
8V9 C15 F3 3
8V9 C18 F3 3
8V9 C19 F3 3
8V9 C16 F3 3
8V9 C11 F3 3
8V9 N02 F4 1
8V9 C03 F4 1
8V9 C06 F4 1
8V9 O01 F4 1
8V9 C10 F4 1
8V9 C11 F4 1
8V9 C16 F4 1
8V9 C19 F4 1
8V9 C18 F4 1
8V9 C15 F4 1
8V9 C09 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8V9
_pdbe_chem_comp_rdkit_properties.exactmw 720.265
_pdbe_chem_comp_rdkit_properties.amw 720.914
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 94
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.405
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 362.405
_pdbe_chem_comp_rdkit_properties.tpsa 168.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.644
_pdbe_chem_comp_rdkit_properties.CrippenMR 192.740
_pdbe_chem_comp_rdkit_properties.chi0v 25.596
_pdbe_chem_comp_rdkit_properties.chi1v 14.391
_pdbe_chem_comp_rdkit_properties.chi2v 6.677
_pdbe_chem_comp_rdkit_properties.chi3v 6.677
_pdbe_chem_comp_rdkit_properties.chi4v 4.480
_pdbe_chem_comp_rdkit_properties.chi0n 67.963
_pdbe_chem_comp_rdkit_properties.chi1n 34.324
_pdbe_chem_comp_rdkit_properties.chi2n 5.608
_pdbe_chem_comp_rdkit_properties.chi3n 5.608
_pdbe_chem_comp_rdkit_properties.chi4n 3.572
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.040
_pdbe_chem_comp_rdkit_properties.kappa1 10.523
_pdbe_chem_comp_rdkit_properties.kappa2 16.322
_pdbe_chem_comp_rdkit_properties.kappa3 8.811
_pdbe_chem_comp_rdkit_properties.Phi 3.435
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8V9 UniChem ChEMBL CHEMBL411608
8V9 UniChem PDBe 8V9
8V9 UniChem ZINC ZINC000028704133
8V9 UniChem PubChem 44425675
8V9 UniChem BRENDA 239950
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8V9 C34 -5.671 3.266 0.279 ETKDGv3 1
8V9 C35 -5.047 4.156 -2.321 ETKDGv3 2
8V9 C36 -5.390 4.696 0.034 ETKDGv3 3
8V9 C37 -5.089 5.122 -1.203 ETKDGv3 4
8V9 C32 -5.642 2.385 -0.738 ETKDGv3 5
8V9 C27 -2.138 -4.116 -0.892 ETKDGv3 6
8V9 C28 -1.158 -5.142 -1.300 ETKDGv3 7
8V9 C30 -5.833 0.914 -0.488 ETKDGv3 8
8V9 C29 -4.498 0.266 -0.295 ETKDGv3 9
8V9 C10 1.189 -0.505 -3.329 ETKDGv3 10
8V9 S01 5.803 -1.824 1.901 ETKDGv3 11
8V9 S02 -1.955 2.803 -0.164 ETKDGv3 12
8V9 O01 0.011 -1.299 -1.355 ETKDGv3 13
8V9 O02 2.571 1.913 1.136 ETKDGv3 14
8V9 O03 1.543 -3.538 3.967 ETKDGv3 15
8V9 O04 1.580 -0.482 3.627 ETKDGv3 16
8V9 O05 -2.651 -0.692 3.163 ETKDGv3 17
8V9 O06 -3.991 -0.407 -1.234 ETKDGv3 18
8V9 O07 -4.811 6.465 -1.448 ETKDGv3 19
8V9 N01 3.205 -1.361 2.197 ETKDGv3 20
8V9 N02 2.064 0.031 -0.157 ETKDGv3 21
8V9 N03 -0.759 -1.414 1.993 ETKDGv3 22
8V9 N04 -3.777 0.467 0.929 ETKDGv3 23
8V9 C01 3.748 -0.070 1.784 ETKDGv3 24
8V9 C02 5.136 -0.316 1.123 ETKDGv3 25
8V9 C03 1.325 0.779 -1.184 ETKDGv3 26
8V9 C04 4.127 -2.486 2.128 ETKDGv3 27
8V9 C05 2.766 0.687 0.913 ETKDGv3 28
8V9 C06 0.409 -0.144 -2.044 ETKDGv3 29
8V9 C07 6.088 0.857 1.403 ETKDGv3 30
8V9 C08 5.082 -0.573 -0.397 ETKDGv3 31
8V9 C09 2.274 1.323 -2.193 ETKDGv3 32
8V9 C11 2.214 0.558 -3.418 ETKDGv3 33
8V9 C12 1.968 -1.458 2.928 ETKDGv3 34
8V9 C13 1.150 -2.726 2.889 ETKDGv3 35
8V9 C14 -0.372 -2.432 2.976 ETKDGv3 36
8V9 C15 3.106 2.365 -2.068 ETKDGv3 37
8V9 C16 3.011 0.835 -4.456 ETKDGv3 38
8V9 C17 -1.234 -3.704 2.794 ETKDGv3 39
8V9 C18 3.997 2.702 -3.206 ETKDGv3 40
8V9 C19 3.956 1.972 -4.336 ETKDGv3 41
8V9 C20 -1.219 -4.231 1.378 ETKDGv3 42
8V9 C22 -2.320 0.332 1.017 ETKDGv3 43
8V9 C23 -0.337 -5.175 0.999 ETKDGv3 44
8V9 C24 -2.170 -3.685 0.375 ETKDGv3 45
8V9 C25 -1.676 1.700 1.267 ETKDGv3 46
8V9 C26 -0.305 -5.647 -0.401 ETKDGv3 47
8V9 C31 -1.009 4.193 0.532 ETKDGv3 48
8V9 C33 -5.307 2.861 -2.103 ETKDGv3 49
8V9 C21 -1.949 -0.623 2.117 ETKDGv3 50
8V9 H1 -5.880 2.938 1.290 ETKDGv3 51
8V9 H2 -4.799 4.497 -3.318 ETKDGv3 52
8V9 H3 -5.419 5.391 0.863 ETKDGv3 53
8V9 H4 -2.830 -3.712 -1.620 ETKDGv3 54
8V9 H5 -1.133 -5.485 -2.326 ETKDGv3 55
8V9 H6 -6.360 0.453 -1.352 ETKDGv3 56
8V9 H7 -6.464 0.743 0.411 ETKDGv3 57
8V9 H8 0.522 -0.498 -4.218 ETKDGv3 58
8V9 H9 1.691 -1.492 -3.228 ETKDGv3 59
8V9 H10 -0.718 -1.709 -1.889 ETKDGv3 60
8V9 H11 1.558 -4.475 3.641 ETKDGv3 61
8V9 H12 -4.827 7.157 -0.708 ETKDGv3 62
8V9 H13 2.175 -1.003 -0.256 ETKDGv3 63
8V9 H14 -0.145 -1.253 1.165 ETKDGv3 64
8V9 H15 -4.289 0.877 1.743 ETKDGv3 65
8V9 H16 3.900 0.525 2.714 ETKDGv3 66
8V9 H17 0.726 1.590 -0.720 ETKDGv3 67
8V9 H18 4.107 -3.067 3.074 ETKDGv3 68
8V9 H19 3.856 -3.143 1.276 ETKDGv3 69
8V9 H20 -0.494 0.448 -2.331 ETKDGv3 70
8V9 H21 6.220 1.004 2.497 ETKDGv3 71
8V9 H22 7.089 0.664 0.960 ETKDGv3 72
8V9 H23 5.683 1.795 0.966 ETKDGv3 73
8V9 H24 6.094 -0.823 -0.781 ETKDGv3 74
8V9 H25 4.733 0.328 -0.942 ETKDGv3 75
8V9 H26 4.416 -1.428 -0.635 ETKDGv3 76
8V9 H27 1.368 -3.225 1.917 ETKDGv3 77
8V9 H28 -0.570 -2.035 3.997 ETKDGv3 78
8V9 H29 3.141 2.949 -1.159 ETKDGv3 79
8V9 H30 2.961 0.253 -5.367 ETKDGv3 80
8V9 H31 -2.283 -3.466 3.073 ETKDGv3 81
8V9 H32 -0.905 -4.493 3.504 ETKDGv3 82
8V9 H33 4.684 3.534 -3.121 ETKDGv3 83
8V9 H34 4.609 2.217 -5.164 ETKDGv3 84
8V9 H35 -1.916 -0.071 0.064 ETKDGv3 85
8V9 H36 0.367 -5.591 1.709 ETKDGv3 86
8V9 H37 -2.895 -2.935 0.664 ETKDGv3 87
8V9 H38 -0.582 1.573 1.415 ETKDGv3 88
8V9 H39 -2.108 2.162 2.181 ETKDGv3 89
8V9 H40 0.413 -6.401 -0.697 ETKDGv3 90
8V9 H41 -1.037 5.042 -0.181 ETKDGv3 91
8V9 H42 0.048 3.892 0.692 ETKDGv3 92
8V9 H43 -1.458 4.516 1.494 ETKDGv3 93
8V9 H44 -5.264 2.160 -2.926 ETKDGv3 94
#