data_8VU
#
_chem_comp.id 8VU
_chem_comp.name (R)-4-((R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl)-3-(tert-butoxymethyl)piperazine-2-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H26 F3 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-10
_chem_comp.pdbx_modified_date 2019-03-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 401.423
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8VU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5Y7K
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8VU C10 C1 C 0 1 N N N N N N 47.653 -17.205 49.537 1.471 0.977 -0.519 C10 8VU 1
8VU C13 C2 C 0 1 N N R N N N 45.423 -16.189 50.270 3.877 0.701 -0.943 C13 8VU 2
8VU C17 C3 C 0 1 N N N N N N 46.210 -18.325 51.356 3.007 2.745 0.233 C17 8VU 3
8VU C26 C4 C 0 1 N N N N N N 47.698 -13.034 50.855 3.828 -3.540 -0.556 C26 8VU 4
8VU C28 C5 C 0 1 N N N N N N 47.788 -14.789 52.597 2.232 -3.217 1.339 C28 8VU 5
8VU C01 C6 C 0 1 Y N N N N N 54.548 -16.711 47.466 -5.698 -0.651 0.178 C01 8VU 6
8VU C02 C7 C 0 1 Y N N N N N 54.406 -16.436 48.820 -4.784 -0.998 1.157 C02 8VU 7
8VU C03 C8 C 0 1 Y N N N N N 53.139 -16.397 49.395 -3.623 -0.260 1.312 C03 8VU 8
8VU C04 C9 C 0 1 Y N N N N N 52.016 -16.628 48.613 -3.376 0.824 0.488 C04 8VU 9
8VU C05 C10 C 0 1 Y N N N N N 52.156 -16.908 47.256 -4.288 1.171 -0.491 C05 8VU 10
8VU C06 C11 C 0 1 Y N N N N N 53.426 -16.948 46.681 -5.449 0.435 -0.647 C06 8VU 11
8VU C07 C12 C 0 1 N N N N N N 50.588 -16.606 49.236 -2.112 1.627 0.658 C07 8VU 12
8VU C08 C13 C 0 1 N N R N N N 50.115 -18.072 49.158 -0.976 0.961 -0.122 C08 8VU 13
8VU C09 C14 C 0 1 N N N N N N 48.691 -18.361 49.704 0.333 1.704 0.150 C09 8VU 14
8VU N11 N1 N 0 1 N N N N N N 46.423 -17.238 50.394 2.728 1.452 -0.415 N11 8VU 15
8VU O12 O1 O 0 1 N N N N N N 47.795 -16.331 48.758 1.257 -0.038 -1.147 O12 8VU 16
8VU C14 C15 C 0 1 N N N N N N 44.146 -16.862 49.861 5.000 0.762 0.055 C14 8VU 17
8VU N15 N2 N 0 1 N N N N N N 43.825 -18.162 50.449 5.006 1.600 1.093 N15 8VU 18
8VU C16 C16 C 0 1 N N N N N N 44.721 -18.777 51.445 3.906 2.488 1.444 C16 8VU 19
8VU O18 O2 O 0 1 N N N N N N 43.423 -16.358 49.069 5.944 0.014 -0.089 O18 8VU 20
8VU N19 N3 N 0 1 N N N N N N 51.007 -18.876 49.944 -1.276 1.009 -1.559 N19 8VU 21
8VU F20 F1 F 0 1 N N N N N N 53.563 -17.216 45.363 -6.341 0.775 -1.604 F20 8VU 22
8VU F21 F2 F 0 1 N N N N N N 55.804 -16.745 46.920 -6.829 -1.374 0.022 F21 8VU 23
8VU F22 F3 F 0 1 N N N N N N 53.034 -16.124 50.728 -2.730 -0.599 2.269 F22 8VU 24
8VU C23 C17 C 0 1 N N N N N N 45.226 -15.498 51.638 3.473 -0.757 -1.173 C23 8VU 25
8VU O24 O3 O 0 1 N N N N N N 45.644 -14.129 51.501 3.056 -1.336 0.065 O24 8VU 26
8VU C25 C18 C 0 1 N N N N N N 46.911 -13.689 52.020 2.656 -2.704 -0.039 C25 8VU 27
8VU C27 C19 C 0 1 N N N N N N 46.662 -12.647 53.102 1.480 -2.819 -1.010 C27 8VU 28
8VU H131 H1 H 0 0 N N N N N N 45.722 -15.445 49.517 4.199 1.143 -1.886 H131 8VU 29
8VU H172 H2 H 0 0 N N N N N N 46.820 -19.188 51.051 3.516 3.406 -0.469 H172 8VU 30
8VU H171 H3 H 0 0 N N N N N N 46.532 -17.981 52.350 2.074 3.204 0.558 H171 8VU 31
8VU H3 H4 H 0 1 N N N N N N 48.675 -12.686 51.222 4.666 -3.458 0.137 H3 8VU 32
8VU H1 H5 H 0 1 N N N N N N 47.849 -13.772 50.054 3.523 -4.583 -0.635 H1 8VU 33
8VU H2 H6 H 0 1 N N N N N N 47.128 -12.179 50.463 4.131 -3.174 -1.537 H2 8VU 34
8VU H5 H7 H 0 1 N N N N N N 47.262 -15.279 53.429 3.069 -3.135 2.031 H5 8VU 35
8VU H6 H8 H 0 1 N N N N N N 48.008 -15.531 51.815 1.396 -2.621 1.707 H6 8VU 36
8VU H4 H9 H 0 1 N N N N N N 48.729 -14.353 52.964 1.926 -4.260 1.259 H4 8VU 37
8VU H021 H10 H 0 0 N N N N N N 55.280 -16.252 49.428 -4.977 -1.844 1.801 H021 8VU 38
8VU H051 H11 H 0 0 N N N N N N 51.282 -17.094 46.649 -4.095 2.017 -1.133 H051 8VU 39
8VU H072 H12 H 0 0 N N N N N N 50.624 -16.263 50.281 -2.269 2.637 0.280 H072 8VU 40
8VU H071 H13 H 0 0 N N N N N N 49.921 -15.950 48.658 -1.849 1.671 1.715 H071 8VU 41
8VU H7 H14 H 0 1 N N N N N N 50.153 -18.393 48.107 -0.878 -0.077 0.194 H7 8VU 42
8VU H092 H15 H 0 0 N N N N N N 48.300 -19.244 49.178 0.511 1.746 1.225 H092 8VU 43
8VU H091 H16 H 0 0 N N N N N N 48.780 -18.583 50.778 0.266 2.717 -0.247 H091 8VU 44
8VU H8 H17 H 0 1 N N N N N N 42.990 -18.638 50.173 5.798 1.620 1.653 H8 8VU 45
8VU H161 H18 H 0 0 N N N N N N 44.345 -18.521 52.447 4.310 3.437 1.799 H161 8VU 46
8VU H162 H19 H 0 0 N N N N N N 44.686 -19.868 51.308 3.316 2.031 2.238 H162 8VU 47
8VU H10 H20 H 0 1 N N N N N N 50.716 -19.832 49.906 -2.102 0.470 -1.774 H10 8VU 48
8VU H9 H21 H 0 1 N N N N N N 51.935 -18.795 49.581 -1.373 1.961 -1.878 H9 8VU 49
8VU H231 H23 H 0 0 N N N N N N 44.166 -15.539 51.929 2.652 -0.798 -1.889 H231 8VU 50
8VU H232 H24 H 0 0 N N N N N N 45.836 -16.001 52.403 4.326 -1.312 -1.565 H232 8VU 51
8VU H14 H25 H 0 1 N N N N N N 46.104 -13.105 53.932 1.175 -3.862 -1.090 H14 8VU 52
8VU H12 H26 H 0 1 N N N N N N 47.625 -12.267 53.474 0.645 -2.223 -0.642 H12 8VU 53
8VU H13 H27 H 0 1 N N N N N N 46.077 -11.815 52.682 1.782 -2.453 -1.992 H13 8VU 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8VU F20 C06 SING N N 1
8VU C06 C05 DOUB Y N 2
8VU C06 C01 SING Y N 3
8VU F21 C01 SING N N 4
8VU C05 C04 SING Y N 5
8VU C01 C02 DOUB Y N 6
8VU C04 C07 SING N N 7
8VU C04 C03 DOUB Y N 8
8VU O12 C10 DOUB N N 9
8VU C02 C03 SING Y N 10
8VU O18 C14 DOUB N N 11
8VU C08 C07 SING N N 12
8VU C08 C09 SING N N 13
8VU C08 N19 SING N N 14
8VU C03 F22 SING N N 15
8VU C10 C09 SING N N 16
8VU C10 N11 SING N N 17
8VU C14 C13 SING N N 18
8VU C14 N15 SING N N 19
8VU C13 N11 SING N N 20
8VU C13 C23 SING N N 21
8VU N11 C17 SING N N 22
8VU N15 C16 SING N N 23
8VU C26 C25 SING N N 24
8VU C17 C16 SING N N 25
8VU O24 C23 SING N N 26
8VU O24 C25 SING N N 27
8VU C25 C28 SING N N 28
8VU C25 C27 SING N N 29
8VU C13 H131 SING N N 30
8VU C17 H172 SING N N 31
8VU C17 H171 SING N N 32
8VU C26 H3 SING N N 33
8VU C26 H1 SING N N 34
8VU C26 H2 SING N N 35
8VU C28 H5 SING N N 36
8VU C28 H6 SING N N 37
8VU C28 H4 SING N N 38
8VU C02 H021 SING N N 39
8VU C05 H051 SING N N 40
8VU C07 H072 SING N N 41
8VU C07 H071 SING N N 42
8VU C08 H7 SING N N 43
8VU C09 H092 SING N N 44
8VU C09 H091 SING N N 45
8VU N15 H8 SING N N 46
8VU C16 H161 SING N N 47
8VU C16 H162 SING N N 48
8VU N19 H10 SING N N 49
8VU N19 H9 SING N N 50
8VU C23 H231 SING N N 51
8VU C23 H232 SING N N 52
8VU C27 H14 SING N N 53
8VU C27 H12 SING N N 54
8VU C27 H13 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8VU SMILES ACDLabs 12.01 C(CC(Cc1c(cc(c(c1)F)F)F)N)(N2C(COC(C)(C)C)C(NCC2)=O)=O
8VU InChI InChI 1.03 InChI=1S/C19H26F3N3O3/c1-19(2,3)28-10-16-18(27)24-4-5-25(16)17(26)8-12(23)6-11-7-14(21)15(22)9-13(11)20/h7,9,12,16H,4-6,8,10,23H2,1-3H3,(H,24,27)/t12-,16-/m1/s1
8VU InChIKey InChI 1.03 LCDDAGSJHKEABN-MLGOLLRUSA-N
8VU SMILES_CANONICAL CACTVS 3.385 CC(C)(C)OC[C@H]1N(CCNC1=O)C(=O)C[C@H](N)Cc2cc(F)c(F)cc2F
8VU SMILES CACTVS 3.385 CC(C)(C)OC[CH]1N(CCNC1=O)C(=O)C[CH](N)Cc2cc(F)c(F)cc2F
8VU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)(C)OC[C@@H]1C(=O)NCCN1C(=O)C[C@@H](Cc2cc(c(cc2F)F)F)N
8VU SMILES "OpenEye OEToolkits" 2.0.6 CC(C)(C)OCC1C(=O)NCCN1C(=O)CC(Cc2cc(c(cc2F)F)F)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8VU "SYSTEMATIC NAME" ACDLabs 12.01 (3R)-4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-3-(tert-butoxymethyl)piperazin-2-one
8VU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (3~{R})-4-[(3~{R})-3-azanyl-4-[2,4,5-tris(fluoranyl)phenyl]butanoyl]-3-[(2-methylpropan-2-yl)oxymethyl]piperazin-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8VU 'Create component' 2017-10-10 PDBJ
8VU 'Modify name' 2018-04-13 PDBJ
8VU 'Modify name' 2018-04-19 PDBJ
8VU 'Initial release' 2019-03-20 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 8VU
_pdbe_chem_comp_drugbank_details.drugbank_id DB12625
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Evogliptin
_pdbe_chem_comp_drugbank_details.description
'Evogliptin has been used in trials studying the treatment and screening of Osteoporosis, Renal Impairment, Type 2 Diabetes Mellitus, Diabetes Mellitis Type 2, and Diabetes Mellitus, Type 2.'
_pdbe_chem_comp_drugbank_details.cas_number 1222102-29-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 8VU
_pdbe_chem_comp_synonyms.name Evogliptin
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 8VU
_pdbe_chem_comp_drugbank_classification.drugbank_id DB12625
_pdbe_chem_comp_drugbank_classification.parent 'Hybrid peptides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Peptidomimetics
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as hybrid peptides. These are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8VU C10 C 9.495 1.785 1
8VU C13 C 8.196 4.035 2
8VU C17 C 10.794 4.035 3
8VU C26 C 3.000 2.535 4
8VU C28 C 3.549 4.584 5
8VU C01 C 12.093 -5.715 6
8VU C02 C 13.392 -4.965 7
8VU C03 C 13.392 -3.465 8
8VU C04 C 12.093 -2.715 9
8VU C05 C 10.794 -3.465 10
8VU C06 C 10.794 -4.965 11
8VU C07 C 12.093 -1.215 12
8VU C08 C 10.794 -0.465 13
8VU C09 C 10.794 1.035 14
8VU N11 N 9.495 3.285 15
8VU O12 O 8.196 1.035 16
8VU C14 C 8.196 5.535 17
8VU N15 N 9.495 6.285 18
8VU C16 C 10.794 5.535 19
8VU O18 O 6.897 6.285 20
8VU N19 N 9.495 -1.215 21
8VU F20 F 9.495 -5.715 22
8VU F21 F 12.093 -7.215 23
8VU F22 F 14.691 -2.715 24
8VU C23 C 6.897 3.285 25
8VU O24 O 5.598 4.035 26
8VU C25 C 4.299 3.285 27
8VU C27 C 5.049 1.986 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8VU F20 C06 SINGLE NONE 1
8VU C06 C05 SINGLE NONE 2
8VU C06 C01 DOUBLE NONE 3
8VU F21 C01 SINGLE NONE 4
8VU C05 C04 DOUBLE NONE 5
8VU C01 C02 SINGLE NONE 6
8VU C04 C07 SINGLE NONE 7
8VU C04 C03 SINGLE NONE 8
8VU O12 C10 DOUBLE NONE 9
8VU C02 C03 DOUBLE NONE 10
8VU O18 C14 DOUBLE NONE 11
8VU C08 C07 SINGLE NONE 12
8VU C08 C09 SINGLE NONE 13
8VU C08 N19 SINGLE BEGINWEDGE 14
8VU C03 F22 SINGLE NONE 15
8VU C10 C09 SINGLE NONE 16
8VU C10 N11 SINGLE NONE 17
8VU C14 C13 SINGLE NONE 18
8VU C14 N15 SINGLE NONE 19
8VU C13 N11 SINGLE NONE 20
8VU C13 C23 SINGLE BEGINDASH 21
8VU N11 C17 SINGLE NONE 22
8VU N15 C16 SINGLE NONE 23
8VU C26 C25 SINGLE NONE 24
8VU C17 C16 SINGLE NONE 25
8VU O24 C23 SINGLE NONE 26
8VU O24 C25 SINGLE NONE 27
8VU C25 C28 SINGLE NONE 28
8VU C25 C27 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8VU MurckoScaffold S1 scaffold O=C1CN(C(=O)CCCc2ccccc2)CCN1 InChI=1S/C14H18N2O2/c17-13-11-16(10-9-15-13)14(18)8-4-7-12-5-2-1-3-6-12/h1-3,5-6H,4,7-11H2,(H,15,17) JJTBGAKYFGDZMA-UHFFFAOYSA-N
8VU amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8VU peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
8VU phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8VU piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8VU C10 S1 1
8VU C13 S1 1
8VU C17 S1 1
8VU C01 S1 1
8VU C02 S1 1
8VU C03 S1 1
8VU C04 S1 1
8VU C05 S1 1
8VU C06 S1 1
8VU C07 S1 1
8VU C08 S1 1
8VU C09 S1 1
8VU N11 S1 1
8VU O12 S1 1
8VU C14 S1 1
8VU N15 S1 1
8VU C16 S1 1
8VU O18 S1 1
8VU N11 F1 1
8VU C10 F1 1
8VU O12 F1 1
8VU C09 F1 1
8VU N15 F1 2
8VU C14 F1 2
8VU O18 F1 2
8VU C13 F1 2
8VU O18 F2 1
8VU C14 F2 1
8VU C13 F2 1
8VU N11 F2 1
8VU C01 F3 1
8VU C06 F3 1
8VU C05 F3 1
8VU C04 F3 1
8VU C03 F3 1
8VU C02 F3 1
8VU N11 F4 1
8VU C13 F4 1
8VU C14 F4 1
8VU N15 F4 1
8VU C16 F4 1
8VU C17 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8VU
_pdbe_chem_comp_rdkit_properties.exactmw 401.193
_pdbe_chem_comp_rdkit_properties.amw 401.429
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.579
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 198.456
_pdbe_chem_comp_rdkit_properties.tpsa 84.660
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.451
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.562
_pdbe_chem_comp_rdkit_properties.chi0v 13.200
_pdbe_chem_comp_rdkit_properties.chi1v 6.725
_pdbe_chem_comp_rdkit_properties.chi2v 2.584
_pdbe_chem_comp_rdkit_properties.chi3v 2.584
_pdbe_chem_comp_rdkit_properties.chi4v 1.523
_pdbe_chem_comp_rdkit_properties.chi0n 39.200
_pdbe_chem_comp_rdkit_properties.chi1n 19.567
_pdbe_chem_comp_rdkit_properties.chi2n 2.584
_pdbe_chem_comp_rdkit_properties.chi3n 2.584
_pdbe_chem_comp_rdkit_properties.chi4n 1.523
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.130
_pdbe_chem_comp_rdkit_properties.kappa1 5.724
_pdbe_chem_comp_rdkit_properties.kappa2 8.914
_pdbe_chem_comp_rdkit_properties.kappa3 5.934
_pdbe_chem_comp_rdkit_properties.Phi 1.822
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8VU UniChem ChEMBL CHEMBL1779710
8VU UniChem DrugBank DB12625
8VU UniChem PDBe 8VU
8VU UniChem ZINC ZINC000068267685
8VU UniChem fdasrs 09118300L7
8VU UniChem SureChEMBL SCHEMBL343846
8VU UniChem 'PubChem TPHARMA' 56392536
8VU UniChem PubChem 25022354
8VU UniChem Nikkaji J3.333.215G
8VU UniChem BindingDb 50344779
8VU UniChem 'EPA CompTox Dashboard' DTXSID00153545
8VU UniChem DrugCentral 5239
8VU UniChem BRENDA 232488
8VU UniChem ClinicalTrials DA-1229
8VU UniChem ClinicalTrials DA1229
8VU UniChem ClinicalTrials EVOGLIPTIN
8VU UniChem 'Probes And Drugs' PD058513
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8VU C10 0.466 -2.341 -0.716 ETKDGv3 1
8VU C13 -1.844 -1.346 -0.839 ETKDGv3 2
8VU C17 -0.997 -2.322 1.359 ETKDGv3 3
8VU C26 -1.092 2.924 -1.371 ETKDGv3 4
8VU C28 -3.249 2.859 -2.626 ETKDGv3 5
8VU C01 3.123 2.003 2.744 ETKDGv3 6
8VU C02 4.345 1.691 1.976 ETKDGv3 7
8VU C03 4.267 0.972 0.848 ETKDGv3 8
8VU C04 2.949 0.482 0.362 ETKDGv3 9
8VU C05 1.842 0.777 1.069 ETKDGv3 10
8VU C06 1.932 1.570 2.311 ETKDGv3 11
8VU C07 2.858 -0.340 -0.905 ETKDGv3 12
8VU C08 2.976 -1.866 -0.664 ETKDGv3 13
8VU C09 1.750 -2.451 0.077 ETKDGv3 14
8VU N11 -0.808 -2.079 -0.080 ETKDGv3 15
8VU O12 0.505 -2.529 -1.963 ETKDGv3 16
8VU C14 -3.229 -1.599 -0.291 ETKDGv3 17
8VU N15 -3.415 -2.216 0.985 ETKDGv3 18
8VU C16 -2.347 -2.984 1.608 ETKDGv3 19
8VU O18 -4.238 -1.235 -0.953 ETKDGv3 20
8VU N19 4.200 -2.170 0.082 ETKDGv3 21
8VU F20 0.806 1.855 3.010 ETKDGv3 22
8VU F21 3.212 2.732 3.884 ETKDGv3 23
8VU F22 5.400 0.708 0.149 ETKDGv3 24
8VU C23 -1.527 0.156 -0.825 ETKDGv3 25
8VU O24 -2.432 0.849 -1.667 ETKDGv3 26
8VU C25 -2.489 2.255 -1.432 ETKDGv3 27
8VU C27 -3.293 2.565 -0.150 ETKDGv3 28
8VU H131 -1.846 -1.697 -1.895 ETKDGv3 29
8VU H172 -0.221 -3.007 1.760 ETKDGv3 30
8VU H171 -0.939 -1.358 1.909 ETKDGv3 31
8VU H3 -1.188 4.031 -1.354 ETKDGv3 32
8VU H1 -0.488 2.636 -2.258 ETKDGv3 33
8VU H2 -0.540 2.629 -0.453 ETKDGv3 34
8VU H5 -2.707 2.648 -3.573 ETKDGv3 35
8VU H6 -3.357 3.961 -2.520 ETKDGv3 36
8VU H4 -4.263 2.412 -2.704 ETKDGv3 37
8VU H021 5.304 2.049 2.327 ETKDGv3 38
8VU H051 0.872 0.429 0.745 ETKDGv3 39
8VU H072 3.670 -0.028 -1.597 ETKDGv3 40
8VU H071 1.912 -0.112 -1.440 ETKDGv3 41
8VU H7 3.048 -2.361 -1.660 ETKDGv3 42
8VU H092 1.924 -3.530 0.278 ETKDGv3 43
8VU H091 1.655 -1.946 1.059 ETKDGv3 44
8VU H8 -4.379 -2.284 1.382 ETKDGv3 45
8VU H161 -2.530 -3.057 2.701 ETKDGv3 46
8VU H162 -2.342 -4.010 1.181 ETKDGv3 47
8VU H10 4.290 -3.209 0.165 ETKDGv3 48
8VU H9 5.019 -1.863 -0.491 ETKDGv3 49
8VU H231 -1.563 0.508 0.227 ETKDGv3 50
8VU H232 -0.498 0.293 -1.219 ETKDGv3 51
8VU H14 -4.247 1.995 -0.149 ETKDGv3 52
8VU H12 -2.726 2.302 0.767 ETKDGv3 53
8VU H13 -3.528 3.649 -0.086 ETKDGv3 54
#