data_8W0
#
_chem_comp.id 8W0
_chem_comp.name
"propyl (3~{S})-4-[[(6~{R})-6-(aminomethyl)-5,6,7,8-tetrahydroacridin-3-yl]carbonyl]-3-methyl-piperazine-1-carboxylate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H32 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-10-12
_chem_comp.pdbx_modified_date 2018-10-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 424.536
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8W0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5YJO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8W0 CAA C1 C 0 1 Y N N N N N 18.895 -1.862 123.083 -2.582 0.371 -0.232 CAA 8W0 1
8W0 CAB C2 C 0 1 Y N N N N N 18.699 -1.960 121.713 -2.404 -0.791 -1.023 CAB 8W0 2
8W0 CAC C3 C 0 1 Y N N N N N 17.577 -1.378 121.131 -1.170 -1.028 -1.654 CAC 8W0 3
8W0 CAD C4 C 0 1 Y N N N N N 16.649 -0.704 121.920 -0.151 -0.144 -1.505 CAD 8W0 4
8W0 CAE C5 C 0 1 Y N N N N N 16.854 -0.601 123.295 -0.312 1.014 -0.724 CAE 8W0 5
8W0 CAF C6 C 0 1 Y N N N N N 17.973 -1.188 123.870 -1.513 1.272 -0.087 CAF 8W0 6
8W0 CAH C7 C 0 1 Y N N N N N 20.886 -3.084 122.952 -4.771 -0.242 0.243 CAH 8W0 7
8W0 CAI C8 C 0 1 Y N N N N N 20.745 -3.202 121.565 -4.660 -1.398 -0.520 CAI 8W0 8
8W0 CAJ C9 C 0 1 Y N N N N N 19.634 -2.639 120.942 -3.480 -1.685 -1.158 CAJ 8W0 9
8W0 CAK C10 C 0 1 N N N N N N 21.976 -3.604 123.654 -6.041 0.117 0.973 CAK 8W0 10
8W0 CAL C11 C 0 1 N N R N N N 22.788 -4.575 122.833 -7.226 -0.658 0.402 CAL 8W0 11
8W0 CAM C12 C 0 1 N N N N N N 23.019 -3.955 121.479 -6.863 -2.147 0.372 CAM 8W0 12
8W0 CAN C13 C 0 1 N N N N N N 21.674 -3.887 120.783 -5.796 -2.372 -0.691 CAN 8W0 13
8W0 CAO C14 C 0 1 N N N N N N 24.125 -4.801 123.544 -8.455 -0.446 1.289 CAO 8W0 14
8W0 CAR C15 C 0 1 N N N N N N 15.959 0.065 124.128 0.813 1.962 -0.578 CAR 8W0 15
8W0 CAU C16 C 0 1 N N N N N N 15.132 2.098 125.201 2.362 0.073 -0.733 CAU 8W0 16
8W0 CAV C17 C 0 1 N N N N N N 15.759 3.280 125.956 3.217 -0.391 0.453 CAV 8W0 17
8W0 CAX C18 C 0 1 N N N N N N 17.791 3.169 124.429 4.064 1.972 0.768 CAX 8W0 18
8W0 CAY C19 C 0 1 N N S N N N 17.077 2.180 123.527 3.209 2.436 -0.418 CAY 8W0 19
8W0 CAZ C20 C 0 1 N N N N N N 16.413 2.931 122.368 2.679 3.846 -0.148 CAZ 8W0 20
8W0 CBA C21 C 0 1 N N N N N N 16.890 5.304 125.104 5.613 0.083 0.613 CBA 8W0 21
8W0 CBD C22 C 0 1 N N N N N N 14.937 6.520 124.897 7.247 -1.652 0.481 CBD 8W0 22
8W0 CBE C23 C 0 1 N N N N N N 15.405 7.690 124.031 7.324 -3.170 0.305 CBE 8W0 23
8W0 CBF C24 C 0 1 N N N N N N 14.309 8.750 123.976 8.789 -3.611 0.318 CBF 8W0 24
8W0 NAG N1 N 0 1 Y N N N N N 19.968 -2.415 123.662 -3.754 0.590 0.365 NAG 8W0 25
8W0 NAP N2 N 0 1 N N N N N N 25.076 -5.524 122.688 -8.857 0.966 1.240 NAP 8W0 26
8W0 NAS N3 N 0 1 N N N N N N 16.071 1.397 124.287 2.082 1.507 -0.576 NAS 8W0 27
8W0 NAW N4 N 0 1 N N N N N N 16.802 3.970 125.161 4.345 0.538 0.611 NAW 8W0 28
8W0 OAT O1 O 0 1 N N N N N N 15.145 -0.598 124.768 0.594 3.152 -0.460 OAT 8W0 29
8W0 OBB O2 O 0 1 N N N N N N 17.786 5.814 124.431 6.537 0.860 0.746 OBB 8W0 30
8W0 OBC O3 O 0 1 N N N N N N 15.994 6.088 125.765 5.857 -1.234 0.469 OBC 8W0 31
8W0 H1 H1 H 0 1 N N N N N N 17.426 -1.449 120.064 -1.033 -1.914 -2.256 H1 8W0 32
8W0 H2 H2 H 0 1 N N N N N N 15.773 -0.262 121.468 0.795 -0.332 -1.992 H2 8W0 33
8W0 H3 H3 H 0 1 N N N N N N 18.127 -1.119 124.937 -1.630 2.162 0.514 H3 8W0 34
8W0 H4 H4 H 0 1 N N N N N N 19.501 -2.729 119.874 -3.379 -2.580 -1.753 H4 8W0 35
8W0 H5 H5 H 0 1 N N N N N N 21.603 -4.125 124.548 -5.929 -0.125 2.030 H5 8W0 36
8W0 H6 H6 H 0 1 N N N N N N 22.627 -2.772 123.960 -6.227 1.186 0.868 H6 8W0 37
8W0 H7 H7 H 0 1 N N N N N N 22.251 -5.529 122.730 -7.439 -0.310 -0.608 H7 8W0 38
8W0 H8 H8 H 0 1 N N N N N N 23.715 -4.574 120.894 -6.467 -2.448 1.342 H8 8W0 39
8W0 H9 H9 H 0 1 N N N N N N 23.436 -2.944 121.594 -7.749 -2.737 0.139 H9 8W0 40
8W0 H10 H10 H 0 1 N N N N N N 21.791 -3.365 119.822 -6.235 -2.222 -1.677 H10 8W0 41
8W0 H11 H11 H 0 1 N N N N N N 21.309 -4.909 120.603 -5.423 -3.393 -0.615 H11 8W0 42
8W0 H12 H12 H 0 1 N N N N N N 23.949 -5.388 124.458 -9.274 -1.070 0.930 H12 8W0 43
8W0 H13 H13 H 0 1 N N N N N N 24.556 -3.825 123.812 -8.213 -0.720 2.316 H13 8W0 44
8W0 H14 H14 H 0 1 N N N N N N 14.288 2.477 124.606 2.905 -0.094 -1.663 H14 8W0 45
8W0 H15 H15 H 0 1 N N N N N N 14.763 1.372 125.940 1.426 -0.486 -0.750 H15 8W0 46
8W0 H16 H16 H 0 1 N N N N N N 16.214 2.905 126.885 2.614 -0.393 1.360 H16 8W0 47
8W0 H17 H17 H 0 1 N N N N N N 14.967 4.002 126.202 3.592 -1.397 0.262 H17 8W0 48
8W0 H18 H18 H 0 1 N N N N N N 18.422 2.622 125.145 5.001 2.528 0.784 H18 8W0 49
8W0 H19 H19 H 0 1 N N N N N N 18.421 3.833 123.818 3.524 2.139 1.700 H19 8W0 50
8W0 H20 H20 H 0 1 N N N N N N 17.823 1.489 123.108 3.813 2.438 -1.326 H20 8W0 51
8W0 H21 H21 H 0 1 N N N N N N 17.174 3.504 121.818 2.008 3.823 0.711 H21 8W0 52
8W0 H22 H22 H 0 1 N N N N N N 15.936 2.209 121.689 3.514 4.514 0.062 H22 8W0 53
8W0 H23 H23 H 0 1 N N N N N N 15.652 3.619 122.765 2.137 4.204 -1.023 H23 8W0 54
8W0 H24 H24 H 0 1 N N N N N N 14.077 6.839 125.504 7.702 -1.373 1.431 H24 8W0 55
8W0 H25 H25 H 0 1 N N N N N N 14.637 5.685 124.247 7.780 -1.165 -0.335 H25 8W0 56
8W0 H26 H26 H 0 1 N N N N N N 15.620 7.331 123.014 6.791 -3.658 1.122 H26 8W0 57
8W0 H27 H27 H 0 1 N N N N N N 16.316 8.127 124.465 6.869 -3.450 -0.645 H27 8W0 58
8W0 H28 H28 H 0 1 N N N N N N 14.644 9.593 123.353 9.322 -3.124 -0.498 H28 8W0 59
8W0 H29 H29 H 0 1 N N N N N N 13.398 8.313 123.542 9.245 -3.332 1.268 H29 8W0 60
8W0 H30 H30 H 0 1 N N N N N N 14.095 9.109 124.994 8.844 -4.693 0.193 H30 8W0 61
8W0 H31 H31 H 0 1 N N N N N N 25.936 -5.655 123.181 -9.024 1.261 0.289 H31 8W0 62
8W0 H32 H32 H 0 1 N N N N N N 24.693 -6.415 122.443 -9.667 1.131 1.818 H32 8W0 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8W0 CAN CAM SING N N 1
8W0 CAN CAI SING N N 2
8W0 CAJ CAI DOUB Y N 3
8W0 CAJ CAB SING Y N 4
8W0 CAC CAB SING Y N 5
8W0 CAC CAD DOUB Y N 6
8W0 CAM CAL SING N N 7
8W0 CAI CAH SING Y N 8
8W0 CAB CAA DOUB Y N 9
8W0 CAD CAE SING Y N 10
8W0 CAZ CAY SING N N 11
8W0 NAP CAO SING N N 12
8W0 CAL CAO SING N N 13
8W0 CAL CAK SING N N 14
8W0 CAH CAK SING N N 15
8W0 CAH NAG DOUB Y N 16
8W0 CAA NAG SING Y N 17
8W0 CAA CAF SING Y N 18
8W0 CAE CAF DOUB Y N 19
8W0 CAE CAR SING N N 20
8W0 CAY NAS SING N N 21
8W0 CAY CAX SING N N 22
8W0 CBF CBE SING N N 23
8W0 CBE CBD SING N N 24
8W0 CAR NAS SING N N 25
8W0 CAR OAT DOUB N N 26
8W0 NAS CAU SING N N 27
8W0 CAX NAW SING N N 28
8W0 OBB CBA DOUB N N 29
8W0 CBD OBC SING N N 30
8W0 CBA NAW SING N N 31
8W0 CBA OBC SING N N 32
8W0 NAW CAV SING N N 33
8W0 CAU CAV SING N N 34
8W0 CAC H1 SING N N 35
8W0 CAD H2 SING N N 36
8W0 CAF H3 SING N N 37
8W0 CAJ H4 SING N N 38
8W0 CAK H5 SING N N 39
8W0 CAK H6 SING N N 40
8W0 CAL H7 SING N N 41
8W0 CAM H8 SING N N 42
8W0 CAM H9 SING N N 43
8W0 CAN H10 SING N N 44
8W0 CAN H11 SING N N 45
8W0 CAO H12 SING N N 46
8W0 CAO H13 SING N N 47
8W0 CAU H14 SING N N 48
8W0 CAU H15 SING N N 49
8W0 CAV H16 SING N N 50
8W0 CAV H17 SING N N 51
8W0 CAX H18 SING N N 52
8W0 CAX H19 SING N N 53
8W0 CAY H20 SING N N 54
8W0 CAZ H21 SING N N 55
8W0 CAZ H22 SING N N 56
8W0 CAZ H23 SING N N 57
8W0 CBD H24 SING N N 58
8W0 CBD H25 SING N N 59
8W0 CBE H26 SING N N 60
8W0 CBE H27 SING N N 61
8W0 CBF H28 SING N N 62
8W0 CBF H29 SING N N 63
8W0 CBF H30 SING N N 64
8W0 NAP H31 SING N N 65
8W0 NAP H32 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8W0 InChI InChI 1.03 InChI=1S/C24H32N4O3/c1-3-10-31-24(30)27-8-9-28(16(2)15-27)23(29)20-7-6-19-12-18-5-4-17(14-25)11-21(18)26-22(19)13-20/h6-7,12-13,16-17H,3-5,8-11,14-15,25H2,1-2H3/t16-,17+/m0/s1
8W0 InChIKey InChI 1.03 SKXOWPNKAZGYJW-DLBZAZTESA-N
8W0 SMILES_CANONICAL CACTVS 3.385 CCCOC(=O)N1CCN([C@@H](C)C1)C(=O)c2ccc3cc4CC[C@@H](CN)Cc4nc3c2
8W0 SMILES CACTVS 3.385 CCCOC(=O)N1CCN([CH](C)C1)C(=O)c2ccc3cc4CC[CH](CN)Cc4nc3c2
8W0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CCCOC(=O)N1CCN([C@H](C1)C)C(=O)c2ccc3cc4c(nc3c2)C[C@@H](CC4)CN
8W0 SMILES "OpenEye OEToolkits" 2.0.6 CCCOC(=O)N1CCN(C(C1)C)C(=O)c2ccc3cc4c(nc3c2)CC(CC4)CN
#
_pdbx_chem_comp_identifier.comp_id 8W0
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"propyl (3~{S})-4-[[(6~{R})-6-(aminomethyl)-5,6,7,8-tetrahydroacridin-3-yl]carbonyl]-3-methyl-piperazine-1-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8W0 'Create component' 2017-10-12 RCSB
8W0 'Initial release' 2018-10-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8W0 CAA C 11.700 0.704 1
8W0 CAB C 11.700 -0.796 2
8W0 CAC C 13.041 -1.598 3
8W0 CAD C 14.400 -0.827 4
8W0 CAE C 14.400 0.735 5
8W0 CAF C 13.041 1.506 6
8W0 CAH C 9.102 0.704 7
8W0 CAI C 9.102 -0.796 8
8W0 CAJ C 10.401 -1.546 9
8W0 CAK C 7.761 1.506 10
8W0 CAL C 6.402 0.735 11
8W0 CAM C 6.402 -0.827 12
8W0 CAN C 7.761 -1.598 13
8W0 CAO C 5.106 1.490 14
8W0 CAR C 15.696 1.490 15
8W0 CAU C 18.294 1.500 16
8W0 CAV C 19.596 0.755 17
8W0 CAX C 18.306 -1.500 18
8W0 CAY C 17.003 -0.755 19
8W0 CAZ C 15.707 -1.510 20
8W0 CBA C 20.904 -1.490 21
8W0 CBD C 23.502 -1.480 22
8W0 CBE C 24.798 -0.725 23
8W0 CBF C 26.100 -1.470 24
8W0 NAG N 10.401 1.454 25
8W0 NAP N 3.804 0.745 26
8W0 NAS N 16.998 0.745 27
8W0 NAW N 19.602 -0.745 28
8W0 OAT O 15.690 2.990 29
8W0 OBB O 20.909 -2.990 30
8W0 OBC O 22.200 -0.735 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8W0 CAN CAM SINGLE NONE 1
8W0 CAN CAI SINGLE NONE 2
8W0 CAJ CAI DOUBLE NONE 3
8W0 CAJ CAB SINGLE NONE 4
8W0 CAC CAB DOUBLE NONE 5
8W0 CAC CAD SINGLE NONE 6
8W0 CAM CAL SINGLE NONE 7
8W0 CAI CAH SINGLE NONE 8
8W0 CAB CAA SINGLE NONE 9
8W0 CAD CAE DOUBLE NONE 10
8W0 CAY CAZ SINGLE BEGINDASH 11
8W0 NAP CAO SINGLE NONE 12
8W0 CAL CAO SINGLE BEGINWEDGE 13
8W0 CAL CAK SINGLE NONE 14
8W0 CAH CAK SINGLE NONE 15
8W0 CAH NAG DOUBLE NONE 16
8W0 CAA NAG SINGLE NONE 17
8W0 CAA CAF DOUBLE NONE 18
8W0 CAE CAF SINGLE NONE 19
8W0 CAE CAR SINGLE NONE 20
8W0 CAY NAS SINGLE NONE 21
8W0 CAY CAX SINGLE NONE 22
8W0 CBF CBE SINGLE NONE 23
8W0 CBE CBD SINGLE NONE 24
8W0 CAR NAS SINGLE NONE 25
8W0 CAR OAT DOUBLE NONE 26
8W0 NAS CAU SINGLE NONE 27
8W0 CAX NAW SINGLE NONE 28
8W0 OBB CBA DOUBLE NONE 29
8W0 CBD OBC SINGLE NONE 30
8W0 CBA NAW SINGLE NONE 31
8W0 CBA OBC SINGLE NONE 32
8W0 NAW CAV SINGLE NONE 33
8W0 CAU CAV SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8W0 MurckoScaffold S1 scaffold O=C(c1ccc2cc3c(nc2c1)CCCC3)N1CCNCC1 InChI=1S/C18H21N3O/c22-18(21-9-7-19-8-10-21)15-6-5-14-11-13-3-1-2-4-16(13)20-17(14)12-15/h5-6,11-12,19H,1-4,7-10H2 RRPFETKONICHFS-UHFFFAOYSA-N
8W0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
8W0 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8W0 piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
8W0 pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
8W0 quinoline F5 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8W0 CAA S1 1
8W0 CAB S1 1
8W0 CAC S1 1
8W0 CAD S1 1
8W0 CAE S1 1
8W0 CAF S1 1
8W0 CAH S1 1
8W0 CAI S1 1
8W0 CAJ S1 1
8W0 CAK S1 1
8W0 CAL S1 1
8W0 CAM S1 1
8W0 CAN S1 1
8W0 CAR S1 1
8W0 CAU S1 1
8W0 CAV S1 1
8W0 CAX S1 1
8W0 CAY S1 1
8W0 NAG S1 1
8W0 NAS S1 1
8W0 NAW S1 1
8W0 OAT S1 1
8W0 NAS F1 1
8W0 CAR F1 1
8W0 OAT F1 1
8W0 CAE F1 1
8W0 CAA F2 1
8W0 CAB F2 1
8W0 CAC F2 1
8W0 CAD F2 1
8W0 CAE F2 1
8W0 CAF F2 1
8W0 NAS F3 1
8W0 CAY F3 1
8W0 CAX F3 1
8W0 NAW F3 1
8W0 CAV F3 1
8W0 CAU F3 1
8W0 CAA F4 1
8W0 CAB F4 1
8W0 CAJ F4 1
8W0 CAI F4 1
8W0 CAH F4 1
8W0 NAG F4 1
8W0 CAD F5 1
8W0 CAC F5 1
8W0 CAB F5 1
8W0 CAA F5 1
8W0 CAF F5 1
8W0 CAE F5 1
8W0 NAG F5 1
8W0 CAH F5 1
8W0 CAI F5 1
8W0 CAJ F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8W0
_pdbe_chem_comp_rdkit_properties.exactmw 424.247
_pdbe_chem_comp_rdkit_properties.amw 424.545
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.542
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 228.167
_pdbe_chem_comp_rdkit_properties.tpsa 88.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.399
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.019
_pdbe_chem_comp_rdkit_properties.chi0v 15.014
_pdbe_chem_comp_rdkit_properties.chi1v 8.079
_pdbe_chem_comp_rdkit_properties.chi2v 3.675
_pdbe_chem_comp_rdkit_properties.chi3v 3.675
_pdbe_chem_comp_rdkit_properties.chi4v 2.351
_pdbe_chem_comp_rdkit_properties.chi0n 47.014
_pdbe_chem_comp_rdkit_properties.chi1n 23.973
_pdbe_chem_comp_rdkit_properties.chi2n 3.675
_pdbe_chem_comp_rdkit_properties.chi3n 3.675
_pdbe_chem_comp_rdkit_properties.chi4n 2.351
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.670
_pdbe_chem_comp_rdkit_properties.kappa1 5.276
_pdbe_chem_comp_rdkit_properties.kappa2 9.221
_pdbe_chem_comp_rdkit_properties.kappa3 4.514
_pdbe_chem_comp_rdkit_properties.Phi 1.569
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8W0 UniChem PDBe 8W0
8W0 UniChem PubChem 137348759
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8W0 CAA 2.750 -0.631 0.137 ETKDGv3 1
8W0 CAB 2.374 0.192 -1.028 ETKDGv3 2
8W0 CAC 1.089 0.502 -1.245 ETKDGv3 3
8W0 CAD 0.047 0.014 -0.317 ETKDGv3 4
8W0 CAE 0.379 -0.752 0.743 ETKDGv3 5
8W0 CAF 1.810 -1.079 0.979 ETKDGv3 6
8W0 CAH 5.068 -0.511 -0.455 ETKDGv3 7
8W0 CAI 4.732 0.319 -1.657 ETKDGv3 8
8W0 CAJ 3.455 0.656 -1.911 ETKDGv3 9
8W0 CAK 6.481 -0.964 -0.206 ETKDGv3 10
8W0 CAL 7.529 -0.046 -0.864 ETKDGv3 11
8W0 CAM 7.172 0.181 -2.346 ETKDGv3 12
8W0 CAN 5.825 0.893 -2.527 ETKDGv3 13
8W0 CAO 7.705 1.285 -0.099 ETKDGv3 14
8W0 CAR -0.653 -1.233 1.690 ETKDGv3 15
8W0 CAU -2.391 -2.190 0.151 ETKDGv3 16
8W0 CAV -3.596 -1.600 -0.589 ETKDGv3 17
8W0 CAX -4.471 -1.353 1.788 ETKDGv3 18
8W0 CAY -3.082 -0.823 2.194 ETKDGv3 19
8W0 CAZ -3.064 0.711 2.170 ETKDGv3 20
8W0 CBA -5.912 -0.711 -0.187 ETKDGv3 21
8W0 CBD -8.194 0.192 0.268 ETKDGv3 22
8W0 CBE -8.129 1.709 0.472 ETKDGv3 23
8W0 CBF -7.123 2.385 -0.456 ETKDGv3 24
8W0 NAG 4.131 -0.946 0.341 ETKDGv3 25
8W0 NAP 8.295 1.050 1.216 ETKDGv3 26
8W0 NAS -2.033 -1.346 1.299 ETKDGv3 27
8W0 NAW -4.667 -1.208 0.339 ETKDGv3 28
8W0 OAT -0.318 -1.533 2.868 ETKDGv3 29
8W0 OBB -6.040 -0.528 -1.429 ETKDGv3 30
8W0 OBC -6.978 -0.432 0.678 ETKDGv3 31
8W0 H1 0.801 1.112 -2.093 ETKDGv3 32
8W0 H2 -0.981 0.299 -0.498 ETKDGv3 33
8W0 H3 2.096 -1.688 1.828 ETKDGv3 34
8W0 H4 3.216 1.288 -2.760 ETKDGv3 35
8W0 H5 6.669 -1.034 0.887 ETKDGv3 36
8W0 H6 6.590 -1.989 -0.622 ETKDGv3 37
8W0 H7 8.506 -0.579 -0.843 ETKDGv3 38
8W0 H8 7.970 0.777 -2.839 ETKDGv3 39
8W0 H9 7.132 -0.803 -2.864 ETKDGv3 40
8W0 H10 5.532 0.822 -3.597 ETKDGv3 41
8W0 H11 5.944 1.972 -2.285 ETKDGv3 42
8W0 H12 8.364 1.969 -0.680 ETKDGv3 43
8W0 H13 6.721 1.787 0.030 ETKDGv3 44
8W0 H14 -2.644 -3.209 0.517 ETKDGv3 45
8W0 H15 -1.541 -2.290 -0.558 ETKDGv3 46
8W0 H16 -3.980 -2.355 -1.309 ETKDGv3 47
8W0 H17 -3.265 -0.705 -1.161 ETKDGv3 48
8W0 H18 -5.256 -0.820 2.367 ETKDGv3 49
8W0 H19 -4.544 -2.430 2.053 ETKDGv3 50
8W0 H20 -2.884 -1.160 3.236 ETKDGv3 51
8W0 H21 -2.077 1.086 2.514 ETKDGv3 52
8W0 H22 -3.249 1.086 1.141 ETKDGv3 53
8W0 H23 -3.843 1.117 2.850 ETKDGv3 54
8W0 H24 -8.444 -0.059 -0.787 ETKDGv3 55
8W0 H25 -9.014 -0.205 0.902 ETKDGv3 56
8W0 H26 -9.136 2.137 0.277 ETKDGv3 57
8W0 H27 -7.861 1.930 1.528 ETKDGv3 58
8W0 H28 -7.337 2.126 -1.515 ETKDGv3 59
8W0 H29 -7.196 3.487 -0.340 ETKDGv3 60
8W0 H30 -6.088 2.078 -0.199 ETKDGv3 61
8W0 H31 8.321 1.965 1.722 ETKDGv3 62
8W0 H32 9.290 0.757 1.082 ETKDGv3 63
#