data_8ZM
#
_chem_comp.id 8ZM
_chem_comp.name 5-phenyltetrazolo[1,5-a]pyrimidin-7-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H7 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-03-23
_chem_comp.pdbx_modified_date 2017-09-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 213.195
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8ZM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5V8O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8ZM C4 C1 C 0 1 Y N N N N N 44.348 5.290 -20.343 1.866 0.046 -0.002 C4 8ZM 1
8ZM C7 C2 C 0 1 Y N N N N N 44.263 3.828 -20.137 0.388 -0.055 -0.002 C7 8ZM 2
8ZM C6 C3 C 0 1 Y N N N N N 44.146 7.235 -21.769 4.023 -1.011 -0.000 C6 8ZM 3
8ZM C9 C4 C 0 1 Y N N N N N 43.817 1.541 -20.935 -1.592 -1.392 0.002 C9 8ZM 4
8ZM C8 C5 C 0 1 Y N N N N N 43.827 2.918 -21.166 -0.229 -1.318 0.001 C8 8ZM 5
8ZM C1 C6 C 0 1 Y N N N N N 44.527 8.054 -20.723 4.629 0.233 -0.002 C1 8ZM 6
8ZM C2 C7 C 0 1 Y N N N N N 44.820 7.502 -19.491 3.860 1.383 0.001 C2 8ZM 7
8ZM C3 C8 C 0 1 Y N N N N N 44.736 6.133 -19.298 2.483 1.296 0.001 C3 8ZM 8
8ZM C5 C9 C 0 1 Y N N N N N 44.059 5.863 -21.589 2.646 -1.110 -0.000 C5 8ZM 9
8ZM N10 N1 N 0 1 Y N N N N N 44.227 1.109 -19.620 -2.315 -0.235 0.000 N10 8ZM 10
8ZM C11 C10 C 0 1 Y N N N N N 44.613 2.040 -18.681 -1.682 0.979 0.003 C11 8ZM 11
8ZM N12 N2 N 0 1 Y N N N N N 44.635 3.368 -18.944 -0.348 1.046 0.002 N12 8ZM 12
8ZM N13 N3 N 0 1 Y N N N N N 44.927 1.396 -17.567 -2.637 1.901 0.000 N13 8ZM 13
8ZM N14 N4 N 0 1 Y N N N N N 44.730 0.075 -17.835 -3.795 1.343 -0.004 N14 8ZM 14
8ZM N15 N5 N 0 1 Y N N N N N 44.316 -0.127 -19.050 -3.685 0.058 0.000 N15 8ZM 15
8ZM O16 O1 O 0 1 N N N N N N 43.481 0.571 -21.801 -2.215 -2.592 -0.001 O16 8ZM 16
8ZM HC6 H1 H 0 1 N N N N N N 43.915 7.666 -22.732 4.628 -1.905 0.001 HC6 8ZM 17
8ZM HC8 H2 H 0 1 N N N N N N 43.506 3.304 -22.122 0.368 -2.218 0.002 HC8 8ZM 18
8ZM HC1 H3 H 0 1 N N N N N N 44.595 9.122 -20.868 5.706 0.306 -0.002 HC1 8ZM 19
8ZM HC2 H4 H 0 1 N N N N N N 45.116 8.142 -18.673 4.339 2.351 -0.000 HC2 8ZM 20
8ZM HC3 H5 H 0 1 N N N N N N 44.972 5.713 -18.331 1.884 2.195 0.003 HC3 8ZM 21
8ZM HC5 H6 H 0 1 N N N N N N 43.766 5.231 -22.415 2.174 -2.082 0.002 HC5 8ZM 22
8ZM HO16 H7 H 0 0 N N N N N N 43.565 -0.275 -21.377 -1.613 -3.349 0.001 HO16 8ZM 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8ZM O16 C9 SING N N 1
8ZM C6 C5 DOUB Y N 2
8ZM C6 C1 SING Y N 3
8ZM C5 C4 SING Y N 4
8ZM C8 C9 DOUB Y N 5
8ZM C8 C7 SING Y N 6
8ZM C9 N10 SING Y N 7
8ZM C1 C2 DOUB Y N 8
8ZM C4 C7 SING N N 9
8ZM C4 C3 DOUB Y N 10
8ZM C7 N12 DOUB Y N 11
8ZM N10 N15 SING Y N 12
8ZM N10 C11 SING Y N 13
8ZM C2 C3 SING Y N 14
8ZM N15 N14 DOUB Y N 15
8ZM N12 C11 SING Y N 16
8ZM C11 N13 DOUB Y N 17
8ZM N14 N13 SING Y N 18
8ZM C6 HC6 SING N N 19
8ZM C8 HC8 SING N N 20
8ZM C1 HC1 SING N N 21
8ZM C2 HC2 SING N N 22
8ZM C3 HC3 SING N N 23
8ZM C5 HC5 SING N N 24
8ZM O16 HO16 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8ZM SMILES ACDLabs 12.01 c3(c1nc2n(c(c1)O)nnn2)ccccc3
8ZM InChI InChI 1.03 InChI=1S/C10H7N5O/c16-9-6-8(7-4-2-1-3-5-7)11-10-12-13-14-15(9)10/h1-6,16H
8ZM InChIKey InChI 1.03 ZEMGYOQXYFNSGE-UHFFFAOYSA-N
8ZM SMILES_CANONICAL CACTVS 3.385 Oc1cc(nc2nnnn12)c3ccccc3
8ZM SMILES CACTVS 3.385 Oc1cc(nc2nnnn12)c3ccccc3
8ZM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2cc(n3c(n2)nnn3)O
8ZM SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)c2cc(n3c(n2)nnn3)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8ZM "SYSTEMATIC NAME" ACDLabs 12.01 5-phenyltetrazolo[1,5-a]pyrimidin-7-ol
8ZM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 5-phenyl-[1,2,3,4]tetrazolo[1,5-a]pyrimidin-7-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8ZM 'Create component' 2017-03-23 RCSB
8ZM 'Initial release' 2017-09-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8ZM C4 C 1.703 -0.842 1
8ZM C7 C 0.404 -0.093 2
8ZM C6 C 3.004 -3.091 3
8ZM C9 C -0.897 2.155 4
8ZM C8 C 0.403 1.407 5
8ZM C1 C 4.303 -2.340 6
8ZM C2 C 4.301 -0.840 7
8ZM C3 C 3.002 -0.091 8
8ZM C5 C 1.705 -2.342 9
8ZM N10 N -2.195 1.405 10
8ZM C11 C -2.194 -0.095 11
8ZM N12 N -0.895 -0.845 12
8ZM N13 N -3.620 -0.560 13
8ZM N14 N -4.503 0.653 14
8ZM N15 N -3.622 1.867 15
8ZM O16 O -0.898 3.655 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8ZM O16 C9 SINGLE NONE 1
8ZM C6 C5 DOUBLE NONE 2
8ZM C6 C1 SINGLE NONE 3
8ZM C5 C4 SINGLE NONE 4
8ZM C8 C9 DOUBLE NONE 5
8ZM C8 C7 SINGLE NONE 6
8ZM C9 N10 SINGLE NONE 7
8ZM C1 C2 DOUBLE NONE 8
8ZM C4 C7 SINGLE NONE 9
8ZM C4 C3 DOUBLE NONE 10
8ZM C7 N12 DOUBLE NONE 11
8ZM N10 N15 SINGLE NONE 12
8ZM N10 C11 SINGLE NONE 13
8ZM C2 C3 SINGLE NONE 14
8ZM N15 N14 DOUBLE NONE 15
8ZM N12 C11 SINGLE NONE 16
8ZM C11 N13 DOUBLE NONE 17
8ZM N14 N13 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8ZM MurckoScaffold S1 scaffold c1ccc(-c2ccn3nnnc3n2)cc1 InChI=1S/C10H7N5/c1-2-4-8(5-3-1)9-6-7-15-10(11-9)12-13-14-15/h1-7H WVSGMUZCHIZXHV-UHFFFAOYSA-N
8ZM phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
8ZM pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8ZM C4 S1 1
8ZM C7 S1 1
8ZM C6 S1 1
8ZM C9 S1 1
8ZM C8 S1 1
8ZM C1 S1 1
8ZM C2 S1 1
8ZM C3 S1 1
8ZM C5 S1 1
8ZM N10 S1 1
8ZM C11 S1 1
8ZM N12 S1 1
8ZM N13 S1 1
8ZM N14 S1 1
8ZM N15 S1 1
8ZM C4 F1 1
8ZM C5 F1 1
8ZM C6 F1 1
8ZM C1 F1 1
8ZM C2 F1 1
8ZM C3 F1 1
8ZM C8 F2 1
8ZM C9 F2 1
8ZM N10 F2 1
8ZM C11 F2 1
8ZM N12 F2 1
8ZM C7 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 8ZM
_pdbe_chem_comp_rdkit_properties.exactmw 213.065
_pdbe_chem_comp_rdkit_properties.amw 213.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 100.106
_pdbe_chem_comp_rdkit_properties.tpsa 76.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.165
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.643
_pdbe_chem_comp_rdkit_properties.chi0v 7.644
_pdbe_chem_comp_rdkit_properties.chi1v 4.172
_pdbe_chem_comp_rdkit_properties.chi2v 1.819
_pdbe_chem_comp_rdkit_properties.chi3v 1.819
_pdbe_chem_comp_rdkit_properties.chi4v 1.153
_pdbe_chem_comp_rdkit_properties.chi0n 14.644
_pdbe_chem_comp_rdkit_properties.chi1n 7.580
_pdbe_chem_comp_rdkit_properties.chi2n 1.819
_pdbe_chem_comp_rdkit_properties.chi3n 1.819
_pdbe_chem_comp_rdkit_properties.chi4n 1.153
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.500
_pdbe_chem_comp_rdkit_properties.kappa1 4.167
_pdbe_chem_comp_rdkit_properties.kappa2 3.265
_pdbe_chem_comp_rdkit_properties.kappa3 1.278
_pdbe_chem_comp_rdkit_properties.Phi 0.850
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
8ZM UniChem ChEMBL CHEMBL4065757
8ZM UniChem PDBe 8ZM
8ZM UniChem ZINC ZINC000006139807
8ZM UniChem SureChEMBL SCHEMBL5145693
8ZM UniChem BindingDb 50250110
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8ZM C4 -1.131 0.095 -0.193 ETKDGv3 1
8ZM C7 0.352 0.146 -0.260 ETKDGv3 2
8ZM C6 -3.182 -1.252 -0.101 ETKDGv3 3
8ZM C9 2.520 -0.938 0.249 ETKDGv3 4
8ZM C8 1.179 -0.967 0.330 ETKDGv3 5
8ZM C1 -3.962 -0.000 -0.065 ETKDGv3 6
8ZM C2 -3.333 1.179 -0.104 ETKDGv3 7
8ZM C3 -1.858 1.231 -0.176 ETKDGv3 8
8ZM C5 -1.845 -1.211 -0.164 ETKDGv3 9
8ZM N10 3.128 0.138 -0.463 ETKDGv3 10
8ZM C11 2.359 1.230 -0.878 ETKDGv3 11
8ZM N12 0.935 1.191 -0.796 ETKDGv3 12
8ZM N13 3.071 2.300 -0.979 ETKDGv3 13
8ZM N14 4.377 1.899 -0.635 ETKDGv3 14
8ZM N15 4.407 0.668 -0.306 ETKDGv3 15
8ZM O16 3.292 -1.933 0.842 ETKDGv3 16
8ZM HC6 -3.696 -2.205 -0.087 ETKDGv3 17
8ZM HC8 0.704 -1.774 0.872 ETKDGv3 18
8ZM HC1 -5.042 -0.039 -0.012 ETKDGv3 19
8ZM HC2 -3.903 2.099 -0.082 ETKDGv3 20
8ZM HC3 -1.378 2.202 -0.195 ETKDGv3 21
8ZM HC5 -1.297 -2.142 -0.220 ETKDGv3 22
8ZM HO16 4.302 -1.916 0.777 ETKDGv3 23
#