data_90Q
#
_chem_comp.id 90Q
_chem_comp.name (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H11 Cl O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-12-31
_chem_comp.pdbx_modified_date 2022-12-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 306.698
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 90Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7W9Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
90Q CAA C1 C 0 1 Y N N N N N -23.138 1.064 -4.713 1.860 -0.582 -0.286 CAA 90Q 1
90Q CAB C2 C 0 1 Y N N N N N -22.174 0.449 -3.917 2.576 0.534 0.187 CAB 90Q 2
90Q CAC C3 C 0 1 Y N N N N N -24.213 1.727 -4.129 2.544 -1.747 -0.584 CAC 90Q 3
90Q CAD C4 C 0 1 Y N N N N N -22.311 0.513 -2.532 3.966 0.459 0.365 CAD 90Q 4
90Q CAE C5 C 0 1 Y N N N N N -24.349 1.769 -2.747 3.921 -1.814 -0.411 CAE 90Q 5
90Q CAF C6 C 0 1 Y N N N N N -23.390 1.164 -1.941 4.630 -0.717 0.062 CAF 90Q 6
90Q CAH C7 C 0 1 N N R N N N -22.232 -0.138 -6.538 -0.100 0.751 -0.609 CAH 90Q 7
90Q CAI C8 C 0 1 N N N N N N -21.081 -0.195 -4.486 1.849 1.773 0.486 CAI 90Q 8
90Q CAJ C9 C 0 1 N N N N N N -20.901 -0.161 -5.863 0.335 1.676 0.537 CAJ 90Q 9
90Q CAN C10 C 0 1 Y N N N N N -22.097 -0.050 -7.927 -1.599 0.592 -0.585 CAN 90Q 10
90Q CAO C11 C 0 1 Y N N N N N -21.971 -1.189 -8.719 -2.385 1.325 -1.454 CAO 90Q 11
90Q CAP C12 C 0 1 Y N N N N N -22.109 1.207 -8.517 -2.184 -0.293 0.302 CAP 90Q 12
90Q CAQ C13 C 0 1 Y N N N N N -21.854 -1.067 -10.103 -3.759 1.181 -1.434 CAQ 90Q 13
90Q CAR C14 C 0 1 Y N N N N N -21.992 1.339 -9.893 -3.559 -0.441 0.326 CAR 90Q 14
90Q CAS C15 C 0 1 Y N N N N N -21.864 0.201 -10.680 -4.350 0.300 -0.542 CAS 90Q 15
90Q OAG O1 O 0 1 N N N N N N -22.997 0.995 -6.076 0.517 -0.526 -0.446 OAG 90Q 16
90Q OAK O2 O 0 1 N N N N N N -25.414 2.409 -2.193 4.579 -2.962 -0.708 OAK 90Q 17
90Q OAL O3 O 0 1 N N N N N N -21.342 -0.093 -1.790 4.655 1.531 0.829 OAL 90Q 18
90Q OAM O4 O 0 1 N N N N N N -20.249 -0.750 -3.771 2.428 2.821 0.683 OAM 90Q 19
90Q OAT O5 O 0 1 N N N N N N -21.756 0.396 -12.025 -5.701 0.157 -0.521 OAT 90Q 20
90Q CLA CL1 CL 0 0 N N N N N N -22.017 2.903 -10.582 -4.294 -1.551 1.439 CLA 90Q 21
90Q H1 H1 H 0 1 N N N N N N -24.947 2.213 -4.755 2.005 -2.608 -0.952 H1 90Q 22
90Q H2 H2 H 0 1 N N N N N N -23.482 1.199 -0.865 5.700 -0.783 0.194 H2 90Q 23
90Q H3 H3 H 0 1 N N N N N N -22.768 -1.062 -6.277 0.205 1.184 -1.562 H3 90Q 24
90Q H4 H4 H 0 1 N N N N N N -20.343 -1.054 -6.182 -0.105 2.664 0.404 H4 90Q 25
90Q H5 H5 H 0 1 N N N N N N -20.335 0.742 -6.137 0.022 1.255 1.493 H5 90Q 26
90Q H6 H6 H 0 1 N N N N N N -21.964 -2.167 -8.261 -1.924 2.012 -2.148 H6 90Q 27
90Q H7 H7 H 0 1 N N N N N N -22.210 2.088 -7.900 -1.568 -0.868 0.977 H7 90Q 28
90Q H8 H8 H 0 1 N N N N N N -21.757 -1.947 -10.722 -4.372 1.755 -2.113 H8 90Q 29
90Q H9 H9 H 0 1 N N N N N N -25.363 2.349 -1.246 4.888 -3.014 -1.623 H9 90Q 30
90Q H10 H10 H 0 1 N N N N N N -20.699 -0.485 -2.368 4.733 1.561 1.792 H10 90Q 31
90Q H11 H11 H 0 1 N N N N N N -21.784 1.327 -12.214 -6.034 -0.531 -1.114 H11 90Q 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
90Q OAT CAS SING N N 1
90Q CAS CAQ DOUB Y N 2
90Q CAS CAR SING Y N 3
90Q CLA CAR SING N N 4
90Q CAQ CAO SING Y N 5
90Q CAR CAP DOUB Y N 6
90Q CAO CAN DOUB Y N 7
90Q CAP CAN SING Y N 8
90Q CAN CAH SING N N 9
90Q CAH OAG SING N N 10
90Q CAH CAJ SING N N 11
90Q OAG CAA SING N N 12
90Q CAJ CAI SING N N 13
90Q CAA CAC DOUB Y N 14
90Q CAA CAB SING Y N 15
90Q CAI CAB SING N N 16
90Q CAI OAM DOUB N N 17
90Q CAC CAE SING Y N 18
90Q CAB CAD DOUB Y N 19
90Q CAE OAK SING N N 20
90Q CAE CAF DOUB Y N 21
90Q CAD CAF SING Y N 22
90Q CAD OAL SING N N 23
90Q CAC H1 SING N N 24
90Q CAF H2 SING N N 25
90Q CAH H3 SING N N 26
90Q CAJ H4 SING N N 27
90Q CAJ H5 SING N N 28
90Q CAO H6 SING N N 29
90Q CAP H7 SING N N 30
90Q CAQ H8 SING N N 31
90Q OAK H9 SING N N 32
90Q OAL H10 SING N N 33
90Q OAT H11 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
90Q InChI InChI 1.03 InChI=1S/C15H11ClO5/c16-9-3-7(1-2-10(9)18)13-6-12(20)15-11(19)4-8(17)5-14(15)21-13/h1-5,13,17-19H,6H2/t13-/m1/s1
90Q InChIKey InChI 1.03 GOSBDBOXKLAPRA-CYBMUJFWSA-N
90Q SMILES_CANONICAL CACTVS 3.385 Oc1cc(O)c2C(=O)C[C@@H](Oc2c1)c3ccc(O)c(Cl)c3
90Q SMILES CACTVS 3.385 Oc1cc(O)c2C(=O)C[CH](Oc2c1)c3ccc(O)c(Cl)c3
90Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1[C@H]2CC(=O)c3c(cc(cc3O2)O)O)Cl)O
90Q SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C2CC(=O)c3c(cc(cc3O2)O)O)Cl)O
#
_pdbx_chem_comp_identifier.comp_id 90Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
90Q 'Create component' 2021-12-31 PDBJ
90Q 'Initial release' 2022-12-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
90Q CAA C 7.803 0.112 1
90Q CAB C 7.803 1.612 2
90Q CAC C 6.463 -0.690 3
90Q CAD C 6.463 2.414 4
90Q CAE C 5.103 0.081 5
90Q CAF C 5.103 1.643 6
90Q CAH C 10.402 0.112 7
90Q CAI C 9.102 2.362 8
90Q CAJ C 10.402 1.612 9
90Q CAN C 11.700 -0.638 10
90Q CAO C 12.999 0.112 11
90Q CAP C 11.700 -2.138 12
90Q CAQ C 14.298 -0.638 13
90Q CAR C 12.999 -2.888 14
90Q CAS C 14.298 -2.138 15
90Q OAG O 9.102 -0.638 16
90Q OAK O 3.807 -0.674 17
90Q OAL O 6.480 3.914 18
90Q OAM O 9.102 3.862 19
90Q OAT O 15.598 -2.888 20
90Q CLA Cl 12.999 -4.388 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
90Q OAT CAS SINGLE NONE 1
90Q CAS CAQ SINGLE NONE 2
90Q CAS CAR DOUBLE NONE 3
90Q CLA CAR SINGLE NONE 4
90Q CAQ CAO DOUBLE NONE 5
90Q CAR CAP SINGLE NONE 6
90Q CAO CAN SINGLE NONE 7
90Q CAP CAN DOUBLE NONE 8
90Q CAH CAN SINGLE BEGINDASH 9
90Q CAH OAG SINGLE NONE 10
90Q CAH CAJ SINGLE NONE 11
90Q OAG CAA SINGLE NONE 12
90Q CAJ CAI SINGLE NONE 13
90Q CAA CAC DOUBLE NONE 14
90Q CAA CAB SINGLE NONE 15
90Q CAI CAB SINGLE NONE 16
90Q CAI OAM DOUBLE NONE 17
90Q CAC CAE SINGLE NONE 18
90Q CAB CAD DOUBLE NONE 19
90Q CAE OAK SINGLE NONE 20
90Q CAE CAF DOUBLE NONE 21
90Q CAD CAF SINGLE NONE 22
90Q CAD OAL SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
90Q MurckoScaffold S1 scaffold 'O=C1C[C@H](c2ccccc2)Oc2ccccc21' InChI=1S/C15H12O2/c16-13-10-15(11-6-2-1-3-7-11)17-14-9-5-4-8-12(13)14/h1-9,15H,10H2/t15-/m1/s1 ZONYXWQDUYMKFB-OAHLLOKOSA-N
90Q phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
90Q tocol F2 fragment c1ccc2c(c1)CCCO2 InChI=1S/C9H10O/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6H,3,5,7H2 VZWXIQHBIQLMPN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
90Q CAA S1 1
90Q CAB S1 1
90Q CAC S1 1
90Q CAD S1 1
90Q CAE S1 1
90Q CAF S1 1
90Q CAH S1 1
90Q CAI S1 1
90Q CAJ S1 1
90Q CAN S1 1
90Q CAO S1 1
90Q CAP S1 1
90Q CAQ S1 1
90Q CAR S1 1
90Q CAS S1 1
90Q OAG S1 1
90Q OAM S1 1
90Q CAA F1 1
90Q CAC F1 1
90Q CAE F1 1
90Q CAF F1 1
90Q CAD F1 1
90Q CAB F1 1
90Q CAN F1 2
90Q CAO F1 2
90Q CAQ F1 2
90Q CAS F1 2
90Q CAR F1 2
90Q CAP F1 2
90Q CAF F2 1
90Q CAE F2 1
90Q CAC F2 1
90Q CAA F2 1
90Q CAB F2 1
90Q CAD F2 1
90Q CAI F2 1
90Q CAJ F2 1
90Q CAH F2 1
90Q OAG F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 90Q
_pdbe_chem_comp_rdkit_properties.exactmw 306.030
_pdbe_chem_comp_rdkit_properties.amw 306.701
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 140.253
_pdbe_chem_comp_rdkit_properties.tpsa 86.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.204
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.233
_pdbe_chem_comp_rdkit_properties.chi0v 10.675
_pdbe_chem_comp_rdkit_properties.chi1v 5.792
_pdbe_chem_comp_rdkit_properties.chi2v 2.795
_pdbe_chem_comp_rdkit_properties.chi3v 2.795
_pdbe_chem_comp_rdkit_properties.chi4v 1.782
_pdbe_chem_comp_rdkit_properties.chi0n 20.919
_pdbe_chem_comp_rdkit_properties.chi1n 10.638
_pdbe_chem_comp_rdkit_properties.chi2n 2.529
_pdbe_chem_comp_rdkit_properties.chi3n 2.529
_pdbe_chem_comp_rdkit_properties.chi4n 1.641
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.400
_pdbe_chem_comp_rdkit_properties.kappa1 5.770
_pdbe_chem_comp_rdkit_properties.kappa2 4.857
_pdbe_chem_comp_rdkit_properties.kappa3 2.360
_pdbe_chem_comp_rdkit_properties.Phi 1.334
#
_pdbe_chem_comp_external_mappings.comp_id 90Q
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 90Q
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
90Q CAA -1.765 0.013 0.385 ETKDGv3 1
90Q CAB -2.091 -1.134 -0.501 ETKDGv3 2
90Q CAC -2.694 0.524 1.200 ETKDGv3 3
90Q CAD -3.347 -1.633 -0.509 ETKDGv3 4
90Q CAE -4.069 -0.022 1.192 ETKDGv3 5
90Q CAF -4.377 -1.038 0.376 ETKDGv3 6
90Q CAH 0.449 0.262 -0.684 ETKDGv3 7
90Q CAI -0.980 -1.695 -1.305 ETKDGv3 8
90Q CAJ 0.426 -1.238 -1.033 ETKDGv3 9
90Q CAN 1.837 0.688 -0.276 ETKDGv3 10
90Q CAO 2.335 0.391 1.090 ETKDGv3 11
90Q CAP 2.660 1.283 -1.157 ETKDGv3 12
90Q CAQ 3.577 0.734 1.446 ETKDGv3 13
90Q CAR 4.034 1.669 -0.765 ETKDGv3 14
90Q CAS 4.474 1.407 0.483 ETKDGv3 15
90Q OAG -0.476 0.555 0.367 ETKDGv3 16
90Q OAK -5.045 0.515 2.026 ETKDGv3 17
90Q OAL -3.687 -2.709 -1.327 ETKDGv3 18
90Q OAM -1.183 -2.583 -2.176 ETKDGv3 19
90Q OAT 5.761 1.750 0.904 ETKDGv3 20
90Q CLA 5.048 2.461 -1.964 ETKDGv3 21
90Q H1 -2.448 1.355 1.849 ETKDGv3 22
90Q H2 -5.384 -1.437 0.369 ETKDGv3 23
90Q H3 0.128 0.833 -1.585 ETKDGv3 24
90Q H4 0.830 -1.833 -0.185 ETKDGv3 25
90Q H5 1.063 -1.420 -1.926 ETKDGv3 26
90Q H6 1.693 -0.109 1.805 ETKDGv3 27
90Q H7 2.328 1.486 -2.168 ETKDGv3 28
90Q H8 3.931 0.514 2.445 ETKDGv3 29
90Q H9 -4.836 1.284 2.652 ETKDGv3 30
90Q H10 -4.626 -3.089 -1.333 ETKDGv3 31
90Q H11 6.434 2.213 0.306 ETKDGv3 32
#