data_90S # _chem_comp.id 90S _chem_comp.name "[(3S)-3-(4-bromo-1H-pyrazol-1-yl)pyrrolidin-1-yl][3-(propan-2-yl)-1H-pyrazol-5-yl]methanone" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 Br N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-24 _chem_comp.pdbx_modified_date 2017-05-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.230 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 90S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5V9P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 90S C4 C1 C 0 1 Y N N N N N -49.059 46.803 14.806 4.259 -1.271 -0.230 C4 90S 1 90S C14 C2 C 0 1 N N N N N N -50.161 41.622 19.267 -0.999 3.156 0.430 C14 90S 2 90S C5 C3 C 0 1 Y N N N N N -49.028 46.046 15.996 4.206 -0.042 0.431 C5 90S 3 90S C6 C4 C 0 1 Y N N N N N -50.230 45.353 16.012 2.936 0.451 0.188 C6 90S 4 90S C10 C5 C 0 1 N N N N N N -50.814 44.429 17.001 2.376 1.725 0.667 C10 90S 5 90S C13 C6 C 0 1 N N N N N N -51.042 42.779 18.786 0.522 3.416 0.567 C13 90S 6 90S C3 C7 C 0 1 N N N N N N -47.493 47.257 12.896 6.386 -1.787 -1.395 C3 90S 7 90S C1 C8 C 0 1 N N N N N N -46.841 47.912 15.182 6.180 -2.151 1.068 C1 90S 8 90S C15 C9 C 0 1 N N S N N N -48.851 42.387 19.472 -1.040 2.182 -0.777 C15 90S 9 90S C16 C10 C 0 1 N N N N N N -48.810 43.271 18.195 0.237 1.338 -0.585 C16 90S 10 90S C18 C11 C 0 1 Y N N N N N -49.118 44.491 20.931 -2.356 0.180 -0.029 C18 90S 11 90S C19 C12 C 0 1 Y N N N N N -49.090 44.774 22.261 -3.608 -0.292 -0.233 C19 90S 12 90S C2 C13 C 0 1 N N N N N N -48.031 47.757 14.239 5.439 -2.207 -0.270 C2 90S 13 90S C20 C14 C 0 1 Y N N N N N -48.887 43.555 22.901 -4.272 0.602 -1.081 C20 90S 14 90S N12 N1 N 0 1 N N N N N N -50.222 43.595 17.896 1.156 2.122 0.254 N12 90S 15 90S N17 N2 N 0 1 Y N N N N N -48.932 43.144 20.742 -2.234 1.335 -0.718 N17 90S 16 90S N21 N3 N 0 1 Y N N N N N -48.795 42.581 22.014 -3.448 1.575 -1.375 N21 90S 17 90S N7 N4 N 0 1 Y N N N N N -50.895 45.730 14.882 2.306 -0.482 -0.587 N7 90S 18 90S N9 N5 N 0 1 Y N N N N N -50.189 46.554 14.215 3.100 -1.468 -0.805 N9 90S 19 90S O11 O1 O 0 1 N N N N N N -52.022 44.425 17.009 3.014 2.419 1.435 O11 90S 20 90S BR2 BR1 BR 0 0 N N N N N N -49.317 46.424 23.117 -4.332 -1.878 0.497 BR2 90S 21 90S H1 H1 H 0 1 N N N N N N -50.533 41.183 20.204 -1.397 2.683 1.328 H1 90S 22 90S H2 H2 H 0 1 N N N N N N -50.064 40.834 18.506 -1.535 4.078 0.206 H2 90S 23 90S H3 H3 H 0 1 N N N N N N -48.240 46.013 16.734 4.990 0.425 1.009 H3 90S 24 90S H4 H4 H 0 1 N N N N N N -51.381 43.378 19.644 0.843 4.178 -0.143 H4 90S 25 90S H5 H5 H 0 1 N N N N N N -51.916 42.389 18.244 0.764 3.722 1.585 H5 90S 26 90S H6 H6 H 0 1 N N N N N N -46.750 47.970 12.510 6.735 -0.770 -1.216 H6 90S 27 90S H7 H7 H 0 1 N N N N N N -47.021 46.273 13.034 7.240 -2.464 -1.424 H7 90S 28 90S H9 H8 H 0 1 N N N N N N -48.322 47.168 12.179 5.858 -1.827 -2.348 H9 90S 29 90S H10 H9 H 0 1 N N N N N N -47.192 48.271 16.161 6.529 -1.134 1.247 H10 90S 30 90S H11 H10 H 0 1 N N N N N N -46.342 46.939 15.306 5.505 -2.450 1.870 H11 90S 31 90S H12 H11 H 0 1 N N N N N N -46.130 48.637 14.759 7.034 -2.828 1.039 H12 90S 32 90S H13 H12 H 0 1 N N N N N N -47.998 41.692 19.478 -1.005 2.731 -1.717 H13 90S 33 90S H14 H13 H 0 1 N N N N N N -48.357 42.718 17.359 -0.009 0.400 -0.087 H14 90S 34 90S H15 H14 H 0 1 N N N N N N -48.235 44.190 18.382 0.697 1.135 -1.552 H15 90S 35 90S H16 H15 H 0 1 N N N N N N -49.264 45.216 20.144 -1.593 -0.282 0.580 H16 90S 36 90S H17 H16 H 0 1 N N N N N N -48.498 48.742 14.090 5.090 -3.224 -0.449 H17 90S 37 90S H18 H17 H 0 1 N N N N N N -48.815 43.424 23.971 -5.289 0.506 -1.431 H18 90S 38 90S H8 H18 H 0 1 N N N N N N -51.803 45.407 14.616 1.397 -0.412 -0.918 H8 90S 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 90S C3 C2 SING N N 1 90S N9 C4 DOUB Y N 2 90S N9 N7 SING Y N 3 90S C2 C4 SING N N 4 90S C2 C1 SING N N 5 90S C4 C5 SING Y N 6 90S N7 C6 SING Y N 7 90S C5 C6 DOUB Y N 8 90S C6 C10 SING N N 9 90S C10 O11 DOUB N N 10 90S C10 N12 SING N N 11 90S N12 C16 SING N N 12 90S N12 C13 SING N N 13 90S C16 C15 SING N N 14 90S C13 C14 SING N N 15 90S C14 C15 SING N N 16 90S C15 N17 SING N N 17 90S N17 C18 SING Y N 18 90S N17 N21 SING Y N 19 90S C18 C19 DOUB Y N 20 90S N21 C20 DOUB Y N 21 90S C19 C20 SING Y N 22 90S C19 BR2 SING N N 23 90S C14 H1 SING N N 24 90S C14 H2 SING N N 25 90S C5 H3 SING N N 26 90S C13 H4 SING N N 27 90S C13 H5 SING N N 28 90S C3 H6 SING N N 29 90S C3 H7 SING N N 30 90S C3 H9 SING N N 31 90S C1 H10 SING N N 32 90S C1 H11 SING N N 33 90S C1 H12 SING N N 34 90S C15 H13 SING N N 35 90S C16 H14 SING N N 36 90S C16 H15 SING N N 37 90S C18 H16 SING N N 38 90S C2 H17 SING N N 39 90S C20 H18 SING N N 40 90S N7 H8 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 90S SMILES ACDLabs 12.01 c3(cc(C(=O)N2CCC(n1cc(cn1)Br)C2)nn3)C(C)C 90S InChI InChI 1.03 InChI=1S/C14H18BrN5O/c1-9(2)12-5-13(18-17-12)14(21)19-4-3-11(8-19)20-7-10(15)6-16-20/h5-7,9,11H,3-4,8H2,1-2H3,(H,17,18)/t11-/m0/s1 90S InChIKey InChI 1.03 JFPBFPWCRUXYRC-NSHDSACASA-N 90S SMILES_CANONICAL CACTVS 3.385 CC(C)c1cc([nH]n1)C(=O)N2CC[C@@H](C2)n3cc(Br)cn3 90S SMILES CACTVS 3.385 CC(C)c1cc([nH]n1)C(=O)N2CC[CH](C2)n3cc(Br)cn3 90S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 CC(C)c1cc([nH]n1)C(=O)N2CC[C@@H](C2)n3cc(cn3)Br 90S SMILES "OpenEye OEToolkits" 2.0.6 CC(C)c1cc([nH]n1)C(=O)N2CCC(C2)n3cc(cn3)Br # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 90S "SYSTEMATIC NAME" ACDLabs 12.01 "[(3S)-3-(4-bromo-1H-pyrazol-1-yl)pyrrolidin-1-yl][3-(propan-2-yl)-1H-pyrazol-5-yl]methanone" 90S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(3~{S})-3-(4-bromanylpyrazol-1-yl)pyrrolidin-1-yl]-(3-propan-2-yl-1~{H}-pyrazol-5-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 90S 'Create component' 2017-03-24 RCSB 90S 'Initial release' 2017-05-10 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal 90S C4 C 5.541 -4.872 1 90S C14 C 6.152 0.942 2 90S C5 C 6.005 -3.446 3 90S C6 C 7.505 -3.446 4 90S C10 C 8.386 -2.232 5 90S C13 C 6.309 -0.550 6 90S C3 C 3.803 -6.803 7 90S C1 C 3.000 -4.332 8 90S C15 C 7.523 1.552 9 90S C16 C 8.527 0.437 10 90S C18 C 6.831 4.134 11 90S C19 C 7.581 5.433 12 90S C2 C 4.115 -5.336 13 90S C20 C 9.048 5.121 14 90S N12 N 7.777 -0.862 15 90S N17 N 7.835 3.019 16 90S N21 N 9.205 3.629 17 90S N7 N 7.968 -4.872 18 90S N9 N 6.755 -5.754 19 90S O11 O 9.878 -2.389 20 90S BR2 Br 6.971 6.803 21 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal 90S C3 C2 SINGLE NONE 1 90S N9 C4 DOUBLE NONE 2 90S N9 N7 SINGLE NONE 3 90S C2 C4 SINGLE NONE 4 90S C2 C1 SINGLE NONE 5 90S C4 C5 SINGLE NONE 6 90S N7 C6 SINGLE NONE 7 90S C5 C6 DOUBLE NONE 8 90S C6 C10 SINGLE NONE 9 90S C10 O11 DOUBLE NONE 10 90S C10 N12 SINGLE NONE 11 90S N12 C16 SINGLE NONE 12 90S N12 C13 SINGLE NONE 13 90S C16 C15 SINGLE NONE 14 90S C13 C14 SINGLE NONE 15 90S C14 C15 SINGLE NONE 16 90S C15 N17 SINGLE BEGINDASH 17 90S N17 C18 SINGLE NONE 18 90S N17 N21 SINGLE NONE 19 90S C18 C19 DOUBLE NONE 20 90S N21 C20 DOUBLE NONE 21 90S C19 C20 SINGLE NONE 22 90S C19 BR2 SINGLE NONE 23 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys 90S MurckoScaffold S1 scaffold 'O=C(c1ccn[nH]1)N1CC[C@H](n2cccn2)C1' InChI=1S/C11H13N5O/c17-11(10-2-5-12-14-10)15-7-3-9(8-15)16-6-1-4-13-16/h1-2,4-6,9H,3,7-8H2,(H,12,14)/t9-/m0/s1 RIDPNBMIXPNFFX-VIFPVBQESA-N 90S amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N 90S pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N 90S Z733308538 F3 fragment CN(C)CCn1cc(Br)cn1 InChI=1S/C7H12BrN3/c1-10(2)3-4-11-6-7(8)5-9-11/h5-6H,3-4H2,1-2H3 PFLATUFKWOFXNU-UHFFFAOYSA-N 90S Z337709426 F4 fragment Cn1cc(Br)cn1 InChI=1S/C4H5BrN2/c1-7-3-4(5)2-6-7/h2-3H,1H3 IXJSDKIJPVSPKF-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal 90S C4 S1 1 90S C14 S1 1 90S C5 S1 1 90S C6 S1 1 90S C10 S1 1 90S C13 S1 1 90S C15 S1 1 90S C16 S1 1 90S C18 S1 1 90S C19 S1 1 90S C20 S1 1 90S N12 S1 1 90S N17 S1 1 90S N21 S1 1 90S N7 S1 1 90S N9 S1 1 90S O11 S1 1 90S N12 F1 1 90S C10 F1 1 90S O11 F1 1 90S C6 F1 1 90S C4 F2 1 90S C5 F2 1 90S C6 F2 1 90S N7 F2 1 90S N9 F2 1 90S C18 F2 2 90S C19 F2 2 90S C20 F2 2 90S N21 F2 2 90S N17 F2 2 90S C10 F3 1 90S N12 F3 1 90S C13 F3 1 90S C16 F3 1 90S C15 F3 1 90S N17 F3 1 90S C18 F3 1 90S C19 F3 1 90S BR2 F3 1 90S C20 F3 1 90S N21 F3 1 90S C15 F4 1 90S N17 F4 1 90S C18 F4 1 90S C19 F4 1 90S BR2 F4 1 90S C20 F4 1 90S N21 F4 1 # _pdbe_chem_comp_rdkit_properties.comp_id 90S _pdbe_chem_comp_rdkit_properties.exactmw 351.069 _pdbe_chem_comp_rdkit_properties.amw 352.236 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 1 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5 _pdbe_chem_comp_rdkit_properties.NumHBD 1 _pdbe_chem_comp_rdkit_properties.NumHBA 4 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21 _pdbe_chem_comp_rdkit_properties.NumAtoms 39 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 1 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500 _pdbe_chem_comp_rdkit_properties.NumRings 3 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 2 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 3 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 156.543 _pdbe_chem_comp_rdkit_properties.tpsa 66.810 _pdbe_chem_comp_rdkit_properties.CrippenClogP 2.470 _pdbe_chem_comp_rdkit_properties.CrippenMR 81.629 _pdbe_chem_comp_rdkit_properties.chi0v 11.608 _pdbe_chem_comp_rdkit_properties.chi1v 6.125 _pdbe_chem_comp_rdkit_properties.chi2v 2.652 _pdbe_chem_comp_rdkit_properties.chi3v 2.652 _pdbe_chem_comp_rdkit_properties.chi4v 1.639 _pdbe_chem_comp_rdkit_properties.chi0n 28.022 _pdbe_chem_comp_rdkit_properties.chi1n 14.279 _pdbe_chem_comp_rdkit_properties.chi2n 2.297 _pdbe_chem_comp_rdkit_properties.chi3n 2.297 _pdbe_chem_comp_rdkit_properties.chi4n 1.392 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.630 _pdbe_chem_comp_rdkit_properties.kappa1 4.217 _pdbe_chem_comp_rdkit_properties.kappa2 5.632 _pdbe_chem_comp_rdkit_properties.kappa3 2.876 _pdbe_chem_comp_rdkit_properties.Phi 1.131 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id 90S UniChem PDBe 90S 90S UniChem PubChem 126961719 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal 90S C4 -3.537 0.012 -0.423 ETKDGv3 1 90S C14 2.356 0.796 0.756 ETKDGv3 2 90S C5 -2.155 -0.329 -0.077 ETKDGv3 3 90S C6 -1.532 -0.480 -1.239 ETKDGv3 4 90S C10 -0.138 -0.912 -1.449 ETKDGv3 5 90S C13 0.902 0.554 0.373 ETKDGv3 6 90S C3 -5.265 1.644 0.338 ETKDGv3 7 90S C1 -5.707 -0.838 0.462 ETKDGv3 8 90S C15 3.068 -0.527 0.475 ETKDGv3 9 90S C16 2.227 -1.222 -0.595 ETKDGv3 10 90S C18 5.584 -0.300 0.899 ETKDGv3 11 90S C19 6.593 0.236 0.234 ETKDGv3 12 90S C2 -4.645 0.261 0.562 ETKDGv3 13 90S C20 6.074 0.600 -1.083 ETKDGv3 14 90S N12 0.915 -0.598 -0.517 ETKDGv3 15 90S N17 4.450 -0.315 0.044 ETKDGv3 16 90S N21 4.822 0.287 -1.165 ETKDGv3 17 90S N7 -2.464 -0.274 -2.291 ETKDGv3 18 90S N9 -3.695 0.032 -1.708 ETKDGv3 19 90S O11 0.135 -1.560 -2.495 ETKDGv3 20 90S BR2 8.355 0.536 0.898 ETKDGv3 21 90S H1 2.453 1.088 1.824 ETKDGv3 22 90S H2 2.772 1.607 0.118 ETKDGv3 23 90S H3 -1.755 -0.500 0.912 ETKDGv3 24 90S H4 0.480 1.446 -0.140 ETKDGv3 25 90S H5 0.315 0.321 1.285 ETKDGv3 26 90S H6 -4.484 2.430 0.425 ETKDGv3 27 90S H7 -6.043 1.842 1.106 ETKDGv3 28 90S H9 -5.731 1.711 -0.669 ETKDGv3 29 90S H10 -5.244 -1.832 0.645 ETKDGv3 30 90S H11 -6.496 -0.677 1.227 ETKDGv3 31 90S H12 -6.178 -0.841 -0.544 ETKDGv3 32 90S H13 3.054 -1.149 1.399 ETKDGv3 33 90S H14 2.649 -1.070 -1.612 ETKDGv3 34 90S H15 2.147 -2.310 -0.385 ETKDGv3 35 90S H16 5.603 -0.645 1.924 ETKDGv3 36 90S H17 -4.220 0.238 1.589 ETKDGv3 37 90S H18 6.625 1.083 -1.878 ETKDGv3 38 90S H8 -2.289 -0.345 -3.318 ETKDGv3 39 #