data_9C9
#
_chem_comp.id 9C9
_chem_comp.name
2-[(3Z,6R)-6-[(2,6-dichlorophenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxo-1,4-diazepan-1-yl]-N-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]acetamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H29 Cl2 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-13
_chem_comp.pdbx_modified_date 2018-06-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 542.460
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9C9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5ZFI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9C9 C1 C1 C 0 1 N N N N N N -10.969 24.766 51.586 2.547 -0.366 -1.398 C1 9C9 1
9C9 O2 O1 O 0 1 N N N N N N -10.657 24.473 50.428 2.039 -0.723 -2.440 O2 9C9 2
9C9 CL1 CL1 CL 0 0 N N N N N N -10.433 21.192 54.321 2.432 -0.592 3.165 CL1 9C9 3
9C9 C6 C2 C 0 1 Y N N N N N -11.973 20.673 53.601 1.620 -1.565 1.978 C6 9C9 4
9C9 C7 C3 C 0 1 Y N N N N N -12.645 19.612 54.185 0.329 -2.004 2.209 C7 9C9 5
9C9 C8 C4 C 0 1 Y N N N N N -13.831 19.152 53.645 -0.318 -2.778 1.264 C8 9C9 6
9C9 C9 C5 C 0 1 Y N N N N N -14.375 19.807 52.552 0.326 -3.115 0.088 C9 9C9 7
9C9 C10 C6 C 0 1 Y N N N N N -13.685 20.861 51.960 1.617 -2.676 -0.144 C10 9C9 8
9C9 CL2 CL2 CL 0 0 N N N N N N -14.390 21.692 50.575 2.422 -3.093 -1.625 CL2 9C9 9
9C9 C5 C7 C 0 1 Y N N N N N -12.516 21.341 52.506 2.263 -1.897 0.799 C5 9C9 10
9C9 C4 C8 C 0 1 N N N N N N -11.734 22.422 51.755 3.670 -1.419 0.547 C4 9C9 11
9C9 C3 C9 C 0 1 N N R N N N -11.729 23.795 52.431 3.818 -1.022 -0.923 C3 9C9 12
9C9 C11 C10 C 0 1 N N N N N N -13.134 24.243 52.648 4.981 -0.036 -1.072 C11 9C9 13
9C9 N12 N1 N 0 1 N N N N N N -13.297 25.321 53.591 5.000 0.863 0.086 N12 9C9 14
9C9 C13 C11 C 0 1 N N N N N N -12.454 26.330 53.824 3.894 1.659 0.365 C13 9C9 15
9C9 N14 N2 N 0 1 N N N N N N -12.923 27.286 54.502 4.010 2.945 0.411 N14 9C9 16
9C9 N62 N3 N 0 1 N N N N N N -14.219 27.176 54.878 5.227 3.552 0.075 N62 9C9 17
9C9 C63 C12 C 0 1 N N N N N N -15.122 28.187 54.290 5.939 4.364 1.065 C63 9C9 18
9C9 C68 C13 C 0 1 N N N N N N -14.337 27.108 56.351 5.787 3.375 -1.267 C68 9C9 19
9C9 C15 C14 C 0 1 N N N N N N -10.936 26.258 53.562 2.557 1.002 0.613 C15 9C9 20
9C9 N16 N4 N 0 1 N N N N N N -10.597 25.909 52.163 1.973 0.615 -0.678 N16 9C9 21
9C9 C17 C15 C 0 1 N N N N N N -9.737 26.859 51.436 0.775 1.293 -1.179 C17 9C9 22
9C9 C19 C16 C 0 1 N N N N N N -8.446 26.155 50.973 -0.444 0.470 -0.847 C19 9C9 23
9C9 O30 O2 O 0 1 N N N N N N -7.951 25.278 51.667 -0.321 -0.589 -0.268 O30 9C9 24
9C9 N20 N5 N 0 1 N N N N N N -7.907 26.570 49.799 -1.669 0.911 -1.194 N20 9C9 25
9C9 C21 C17 C 0 1 Y N N N N N -6.773 25.989 49.240 -2.806 0.191 -0.809 C21 9C9 26
9C9 C25 C18 C 0 1 Y N N N N N -5.844 25.231 49.994 -4.017 0.845 -0.640 C25 9C9 27
9C9 C26 C19 C 0 1 Y N N N N N -4.743 24.633 49.354 -5.145 0.126 -0.257 C26 9C9 28
9C9 C27 C20 C 0 1 Y N N N N N -4.542 24.825 47.989 -5.052 -1.248 -0.045 C27 9C9 29
9C9 C28 C21 C 0 1 Y N N N N N -5.446 25.571 47.249 -3.842 -1.893 -0.215 C28 9C9 30
9C9 C29 C22 C 0 1 Y N N N N N -6.542 26.165 47.870 -2.723 -1.180 -0.601 C29 9C9 31
9C9 C60 C23 C 0 1 Y N N N N N -3.740 23.830 50.124 -6.445 0.820 -0.075 C60 9C9 32
9C9 C64 C24 C 0 1 Y N N N N N -3.995 22.968 51.202 -6.685 2.197 -0.253 C64 9C9 33
9C9 N63 N6 N 0 1 Y N N N N N -2.813 22.427 51.597 -7.947 2.424 -0.000 N63 9C9 34
9C9 N71 N7 N 0 1 Y N N N N N -1.845 22.949 50.733 -8.557 1.213 0.347 N71 9C9 35
9C9 C67 C25 C 0 1 N N N N N N -0.448 22.499 50.987 -9.966 1.032 0.704 C67 9C9 36
9C9 C61 C26 C 0 1 Y N N N N N -2.375 23.789 49.859 -7.624 0.240 0.290 C61 9C9 37
9C9 H1 H1 H 0 1 N N N N N N -12.239 19.141 55.068 -0.174 -1.742 3.128 H1 9C9 38
9C9 H2 H2 H 0 1 N N N N N N -14.328 18.292 54.070 -1.326 -3.120 1.445 H2 9C9 39
9C9 H3 H3 H 0 1 N N N N N N -15.333 19.500 52.160 -0.180 -3.720 -0.650 H3 9C9 40
9C9 H4 H4 H 0 1 N N N N N N -12.179 22.534 50.755 3.879 -0.557 1.179 H4 9C9 41
9C9 H5 H5 H 0 1 N N N N N N -10.692 22.085 51.657 4.372 -2.220 0.780 H5 9C9 42
9C9 H6 H6 H 0 1 N N N N N N -11.228 23.702 53.406 4.014 -1.911 -1.523 H6 9C9 43
9C9 H7 H7 H 0 1 N N N N N N -13.539 24.574 51.680 5.920 -0.586 -1.123 H7 9C9 44
9C9 H8 H8 H 0 1 N N N N N N -13.713 23.382 53.013 4.849 0.547 -1.984 H8 9C9 45
9C9 H9 H9 H 0 1 N N N N N N -14.138 25.312 54.133 5.784 0.903 0.657 H9 9C9 46
9C9 H10 H10 H 0 1 N N N N N N -16.147 28.018 54.651 6.621 3.730 1.632 H10 9C9 47
9C9 H11 H11 H 0 1 N N N N N N -14.790 29.193 54.587 6.506 5.143 0.557 H11 9C9 48
9C9 H12 H12 H 0 1 N N N N N N -15.101 28.103 53.193 5.220 4.822 1.744 H12 9C9 49
9C9 H13 H13 H 0 1 N N N N N N -13.648 26.344 56.740 5.494 4.215 -1.897 H13 9C9 50
9C9 H14 H14 H 0 1 N N N N N N -14.082 28.086 56.785 6.875 3.331 -1.203 H14 9C9 51
9C9 H15 H15 H 0 1 N N N N N N -15.369 26.843 56.624 5.410 2.448 -1.699 H15 9C9 52
9C9 H16 H16 H 0 1 N N N N N N -10.503 25.496 54.226 2.695 0.116 1.232 H16 9C9 53
9C9 H17 H17 H 0 1 N N N N N N -10.495 27.239 53.793 1.894 1.703 1.120 H17 9C9 54
9C9 H18 H18 H 0 1 N N N N N N -9.477 27.696 52.100 0.689 2.273 -0.711 H18 9C9 55
9C9 H19 H19 H 0 1 N N N N N N -10.278 27.242 50.558 0.849 1.412 -2.260 H19 9C9 56
9C9 H20 H20 H 0 1 N N N N N N -8.344 27.327 49.314 -1.763 1.727 -1.709 H20 9C9 57
9C9 H21 H21 H 0 1 N N N N N N -5.981 25.112 51.059 -4.084 1.911 -0.805 H21 9C9 58
9C9 H22 H22 H 0 1 N N N N N N -3.679 24.391 47.506 -5.926 -1.809 0.252 H22 9C9 59
9C9 H23 H23 H 0 1 N N N N N N -5.300 25.692 46.186 -3.773 -2.959 -0.054 H23 9C9 60
9C9 H24 H24 H 0 1 N N N N N N -7.222 26.769 47.288 -1.780 -1.689 -0.733 H24 9C9 61
9C9 H25 H25 H 0 1 N N N N N N -4.962 22.770 51.641 -5.954 2.935 -0.547 H25 9C9 62
9C9 H26 H26 H 0 1 N N N N N N -0.434 21.810 51.844 -10.544 0.820 -0.196 H26 9C9 63
9C9 H27 H27 H 0 1 N N N N N N -0.061 21.983 50.096 -10.060 0.200 1.401 H27 9C9 64
9C9 H28 H28 H 0 1 N N N N N N 0.184 23.372 51.209 -10.342 1.942 1.171 H28 9C9 65
9C9 H29 H29 H 0 1 N N N N N N -1.850 24.336 49.090 -7.782 -0.808 0.499 H29 9C9 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9C9 C28 C29 DOUB Y N 1
9C9 C28 C27 SING Y N 2
9C9 C29 C21 SING Y N 3
9C9 C27 C26 DOUB Y N 4
9C9 C21 N20 SING N N 5
9C9 C21 C25 DOUB Y N 6
9C9 C26 C25 SING Y N 7
9C9 C26 C60 SING N N 8
9C9 N20 C19 SING N N 9
9C9 C61 C60 DOUB Y N 10
9C9 C61 N71 SING Y N 11
9C9 C60 C64 SING Y N 12
9C9 O2 C1 DOUB N N 13
9C9 CL2 C10 SING N N 14
9C9 N71 C67 SING N N 15
9C9 N71 N63 SING Y N 16
9C9 C19 C17 SING N N 17
9C9 C19 O30 DOUB N N 18
9C9 C64 N63 DOUB Y N 19
9C9 C17 N16 SING N N 20
9C9 C1 N16 SING N N 21
9C9 C1 C3 SING N N 22
9C9 C4 C3 SING N N 23
9C9 C4 C5 SING N N 24
9C9 C10 C5 DOUB Y N 25
9C9 C10 C9 SING Y N 26
9C9 N16 C15 SING N N 27
9C9 C3 C11 SING N N 28
9C9 C5 C6 SING Y N 29
9C9 C9 C8 DOUB Y N 30
9C9 C11 N12 SING N N 31
9C9 C15 C13 SING N N 32
9C9 N12 C13 SING N N 33
9C9 C6 C7 DOUB Y N 34
9C9 C6 CL1 SING N N 35
9C9 C8 C7 SING Y N 36
9C9 C13 N14 DOUB N Z 37
9C9 C63 N62 SING N N 38
9C9 N14 N62 SING N N 39
9C9 N62 C68 SING N N 40
9C9 C7 H1 SING N N 41
9C9 C8 H2 SING N N 42
9C9 C9 H3 SING N N 43
9C9 C4 H4 SING N N 44
9C9 C4 H5 SING N N 45
9C9 C3 H6 SING N N 46
9C9 C11 H7 SING N N 47
9C9 C11 H8 SING N N 48
9C9 N12 H9 SING N N 49
9C9 C63 H10 SING N N 50
9C9 C63 H11 SING N N 51
9C9 C63 H12 SING N N 52
9C9 C68 H13 SING N N 53
9C9 C68 H14 SING N N 54
9C9 C68 H15 SING N N 55
9C9 C15 H16 SING N N 56
9C9 C15 H17 SING N N 57
9C9 C17 H18 SING N N 58
9C9 C17 H19 SING N N 59
9C9 N20 H20 SING N N 60
9C9 C25 H21 SING N N 61
9C9 C27 H22 SING N N 62
9C9 C28 H23 SING N N 63
9C9 C29 H24 SING N N 64
9C9 C64 H25 SING N N 65
9C9 C67 H26 SING N N 66
9C9 C67 H27 SING N N 67
9C9 C67 H28 SING N N 68
9C9 C61 H29 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9C9 SMILES ACDLabs 12.01 C1(N(CC(/NCC1Cc2c(Cl)cccc2Cl)=N/N(C)C)CC(=O)Nc4cc(c3cnn(C)c3)ccc4)=O
9C9 InChI InChI 1.03 InChI=1S/C26H29Cl2N7O2/c1-33(2)32-24-15-35(26(37)18(12-29-24)11-21-22(27)8-5-9-23(21)28)16-25(36)31-20-7-4-6-17(10-20)19-13-30-34(3)14-19/h4-10,13-14,18H,11-12,15-16H2,1-3H3,(H,29,32)(H,31,36)/t18-/m1/s1
9C9 InChIKey InChI 1.03 GKZIYEBJQVXMQL-GOSISDBHSA-N
9C9 SMILES_CANONICAL CACTVS 3.385 CN(C)\N=C/1CN(CC(=O)Nc2cccc(c2)c3cnn(C)c3)C(=O)[C@@H](CN/1)Cc4c(Cl)cccc4Cl
9C9 SMILES CACTVS 3.385 CN(C)N=C1CN(CC(=O)Nc2cccc(c2)c3cnn(C)c3)C(=O)[CH](CN1)Cc4c(Cl)cccc4Cl
9C9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cn1cc(cn1)c2cccc(c2)NC(=O)CN3C/C(=N/N(C)C)/NC[C@H](C3=O)Cc4c(cccc4Cl)Cl
9C9 SMILES "OpenEye OEToolkits" 2.0.6 Cn1cc(cn1)c2cccc(c2)NC(=O)CN3CC(=NN(C)C)NCC(C3=O)Cc4c(cccc4Cl)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9C9 "SYSTEMATIC NAME" ACDLabs 12.01 2-[(3Z,6R)-6-[(2,6-dichlorophenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxo-1,4-diazepan-1-yl]-N-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]acetamide
9C9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 2-[(3~{Z},6~{R})-6-[[2,6-bis(chloranyl)phenyl]methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]-~{N}-[3-(1-methylpyrazol-4-yl)phenyl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9C9 'Create component' 2018-03-13 PDBJ
9C9 'Initial release' 2018-06-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9C9 C1 C 7.721 0.652 1
9C9 O2 O 6.548 -0.283 2
9C9 CL1 Cl 3.000 3.116 3
9C9 C6 C 4.020 4.216 4
9C9 C7 C 3.578 5.649 5
9C9 C8 C 4.598 6.748 6
9C9 C9 C 6.061 6.415 7
9C9 C10 C 6.503 4.981 8
9C9 CL2 Cl 7.965 4.648 9
9C9 C5 C 5.483 3.882 10
9C9 C4 C 5.925 2.449 11
9C9 C3 C 7.387 2.115 12
9C9 C11 C 8.322 3.287 13
9C9 N12 N 9.822 3.287 14
9C9 C13 C 10.758 2.115 15
9C9 N14 N 12.220 2.449 16
9C9 N62 N 12.662 3.882 17
9C9 C63 C 14.125 4.216 18
9C9 C68 C 11.642 4.981 19
9C9 C15 C 10.424 0.652 20
9C9 N16 N 9.072 0.002 21
9C9 C17 C 9.072 -1.498 22
9C9 C19 C 10.371 -2.248 23
9C9 O30 O 11.671 -1.498 24
9C9 N20 N 10.371 -3.748 25
9C9 C21 C 11.671 -4.498 26
9C9 C25 C 12.970 -3.748 27
9C9 C26 C 14.269 -4.498 28
9C9 C27 C 14.269 -5.998 29
9C9 C28 C 12.970 -6.748 30
9C9 C29 C 11.671 -5.998 31
9C9 C60 C 15.568 -3.748 32
9C9 C64 C 15.724 -2.257 33
9C9 N63 N 17.192 -1.945 34
9C9 N71 N 17.942 -3.244 35
9C9 C67 C 19.433 -3.401 36
9C9 C61 C 16.938 -4.359 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9C9 C28 C29 DOUBLE NONE 1
9C9 C28 C27 SINGLE NONE 2
9C9 C29 C21 SINGLE NONE 3
9C9 C27 C26 DOUBLE NONE 4
9C9 C21 N20 SINGLE NONE 5
9C9 C21 C25 DOUBLE NONE 6
9C9 C26 C25 SINGLE NONE 7
9C9 C26 C60 SINGLE NONE 8
9C9 N20 C19 SINGLE NONE 9
9C9 C61 C60 DOUBLE NONE 10
9C9 C61 N71 SINGLE NONE 11
9C9 C60 C64 SINGLE NONE 12
9C9 O2 C1 DOUBLE NONE 13
9C9 CL2 C10 SINGLE NONE 14
9C9 N71 C67 SINGLE NONE 15
9C9 N71 N63 SINGLE NONE 16
9C9 C19 C17 SINGLE NONE 17
9C9 C19 O30 DOUBLE NONE 18
9C9 C64 N63 DOUBLE NONE 19
9C9 C17 N16 SINGLE NONE 20
9C9 C1 N16 SINGLE NONE 21
9C9 C1 C3 SINGLE NONE 22
9C9 C3 C4 SINGLE BEGINDASH 23
9C9 C4 C5 SINGLE NONE 24
9C9 C10 C5 SINGLE NONE 25
9C9 C10 C9 DOUBLE NONE 26
9C9 N16 C15 SINGLE NONE 27
9C9 C3 C11 SINGLE NONE 28
9C9 C5 C6 DOUBLE NONE 29
9C9 C9 C8 SINGLE NONE 30
9C9 C11 N12 SINGLE NONE 31
9C9 C15 C13 SINGLE ENDUPRIGHT 32
9C9 N12 C13 SINGLE ENDDOWNRIGHT 33
9C9 C6 C7 SINGLE NONE 34
9C9 C6 CL1 SINGLE NONE 35
9C9 C8 C7 DOUBLE NONE 36
9C9 C13 N14 DOUBLE NONE 37
9C9 C63 N62 SINGLE NONE 38
9C9 N14 N62 SINGLE ENDUPRIGHT 39
9C9 N62 C68 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9C9 MurckoScaffold S1 scaffold 'N=C1CN(CC(=O)Nc2cccc(-c3cn[nH]c3)c2)C(=O)[C@H](Cc2ccccc2)CN1' InChI=1S/C23H24N6O2/c24-21-14-29(23(31)18(11-25-21)9-16-5-2-1-3-6-16)15-22(30)28-20-8-4-7-17(10-20)19-12-26-27-13-19/h1-8,10,12-13,18H,9,11,14-15H2,(H2,24,25)(H,26,27)(H,28,30)/t18-/m1/s1 LOPJHAHQPQXHHL-GOSISDBHSA-N
9C9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
9C9 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
9C9 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9C9 pyrazole F4 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
9C9 Z270760514 F5 fragment CN(C)C(=O)CCN.Cl 'InChI=1S/C5H12N2O.ClH/c1-7(2)5(8)3-4-6;/h3-4,6H2,1-2H3;1H' MIXAHKDWLQNRES-UHFFFAOYSA-N
9C9 Z239095918 F6 fragment Cl.Cl.NC(=O)CN1CCCNCC1 'InChI=1S/C7H15N3O.2ClH/c8-7(11)6-10-4-1-2-9-3-5-10;;/h9H,1-6H2,(H2,8,11);2*1H' OHUOXVCMCOMVBP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9C9 C1 S1 1
9C9 O2 S1 1
9C9 C6 S1 1
9C9 C7 S1 1
9C9 C8 S1 1
9C9 C9 S1 1
9C9 C10 S1 1
9C9 C5 S1 1
9C9 C4 S1 1
9C9 C3 S1 1
9C9 C11 S1 1
9C9 N12 S1 1
9C9 C13 S1 1
9C9 N14 S1 1
9C9 C15 S1 1
9C9 N16 S1 1
9C9 C17 S1 1
9C9 C19 S1 1
9C9 O30 S1 1
9C9 N20 S1 1
9C9 C21 S1 1
9C9 C25 S1 1
9C9 C26 S1 1
9C9 C27 S1 1
9C9 C28 S1 1
9C9 C29 S1 1
9C9 C60 S1 1
9C9 C64 S1 1
9C9 N63 S1 1
9C9 N71 S1 1
9C9 C61 S1 1
9C9 N16 F1 1
9C9 C1 F1 1
9C9 O2 F1 1
9C9 C3 F1 1
9C9 N20 F1 2
9C9 C19 F1 2
9C9 O30 F1 2
9C9 C17 F1 2
9C9 O30 F2 1
9C9 C19 F2 1
9C9 C17 F2 1
9C9 N16 F2 1
9C9 C6 F3 1
9C9 C5 F3 1
9C9 C10 F3 1
9C9 C9 F3 1
9C9 C8 F3 1
9C9 C7 F3 1
9C9 C21 F3 2
9C9 C29 F3 2
9C9 C28 F3 2
9C9 C27 F3 2
9C9 C26 F3 2
9C9 C25 F3 2
9C9 C64 F4 1
9C9 C60 F4 1
9C9 C61 F4 1
9C9 N71 F4 1
9C9 N63 F4 1
9C9 CL1 F5 1
9C9 C15 F5 1
9C9 N16 F5 1
9C9 C17 F5 1
9C9 C1 F5 1
9C9 O2 F5 1
9C9 C3 F5 1
9C9 C11 F5 1
9C9 N12 F5 1
9C9 CL2 F5 2
9C9 C15 F5 2
9C9 N16 F5 2
9C9 C17 F5 2
9C9 C1 F5 2
9C9 O2 F5 2
9C9 C3 F5 2
9C9 C11 F5 2
9C9 N12 F5 2
9C9 CL1 F6 1
9C9 CL2 F6 1
9C9 N20 F6 1
9C9 C19 F6 1
9C9 O30 F6 1
9C9 C17 F6 1
9C9 N16 F6 1
9C9 C1 F6 1
9C9 C3 F6 1
9C9 C11 F6 1
9C9 N12 F6 1
9C9 C13 F6 1
9C9 C15 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9C9
_pdbe_chem_comp_rdkit_properties.exactmw 541.176
_pdbe_chem_comp_rdkit_properties.amw 542.471
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.308
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 266.436
_pdbe_chem_comp_rdkit_properties.tpsa 94.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.683
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.222
_pdbe_chem_comp_rdkit_properties.chi0v 19.215
_pdbe_chem_comp_rdkit_properties.chi1v 10.099
_pdbe_chem_comp_rdkit_properties.chi2v 4.460
_pdbe_chem_comp_rdkit_properties.chi3v 4.460
_pdbe_chem_comp_rdkit_properties.chi4v 2.872
_pdbe_chem_comp_rdkit_properties.chi0n 46.703
_pdbe_chem_comp_rdkit_properties.chi1n 23.738
_pdbe_chem_comp_rdkit_properties.chi2n 3.893
_pdbe_chem_comp_rdkit_properties.chi3n 3.893
_pdbe_chem_comp_rdkit_properties.chi4n 2.446
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.560
_pdbe_chem_comp_rdkit_properties.kappa1 8.218
_pdbe_chem_comp_rdkit_properties.kappa2 11.661
_pdbe_chem_comp_rdkit_properties.kappa3 6.809
_pdbe_chem_comp_rdkit_properties.Phi 2.590
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9C9 UniChem PDBe 9C9
9C9 UniChem PubChem 134611704
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9C9 C1 -1.320 0.191 0.813 ETKDGv3 1
9C9 O2 -0.666 0.399 1.872 ETKDGv3 2
9C9 CL1 -4.281 3.371 1.012 ETKDGv3 3
9C9 C6 -5.339 2.125 1.673 ETKDGv3 4
9C9 C7 -6.793 2.391 1.645 ETKDGv3 5
9C9 C8 -7.653 1.504 2.148 ETKDGv3 6
9C9 C9 -7.157 0.253 2.745 ETKDGv3 7
9C9 C10 -5.844 -0.009 2.783 ETKDGv3 8
9C9 CL2 -5.322 -1.516 3.531 ETKDGv3 9
9C9 C5 -4.866 0.971 2.207 ETKDGv3 10
9C9 C4 -3.377 0.667 2.219 ETKDGv3 11
9C9 C3 -2.839 0.220 0.833 ETKDGv3 12
9C9 C11 -3.412 -1.150 0.406 ETKDGv3 13
9C9 N12 -3.420 -1.275 -1.052 ETKDGv3 14
9C9 C13 -2.232 -1.143 -1.850 ETKDGv3 15
9C9 N14 -2.299 -0.942 -3.134 ETKDGv3 16
9C9 N62 -3.499 -0.723 -3.834 ETKDGv3 17
9C9 C63 -4.347 0.427 -3.512 ETKDGv3 18
9C9 C68 -3.702 -1.433 -5.092 ETKDGv3 19
9C9 C15 -0.884 -1.244 -1.205 ETKDGv3 20
9C9 N16 -0.606 -0.040 -0.415 ETKDGv3 21
9C9 C17 0.550 0.799 -0.747 ETKDGv3 22
9C9 C19 1.802 0.231 -0.149 ETKDGv3 23
9C9 O30 2.308 -0.808 -0.653 ETKDGv3 24
9C9 N20 2.380 0.832 1.022 ETKDGv3 25
9C9 C21 3.635 0.433 1.599 ETKDGv3 26
9C9 C25 4.687 0.088 0.831 ETKDGv3 27
9C9 C26 5.988 -0.291 1.449 ETKDGv3 28
9C9 C27 6.105 -0.252 2.790 ETKDGv3 29
9C9 C28 4.964 0.156 3.631 ETKDGv3 30
9C9 C29 3.796 0.482 3.069 ETKDGv3 31
9C9 C60 7.136 -0.704 0.602 ETKDGv3 32
9C9 C64 8.548 -0.814 1.002 ETKDGv3 33
9C9 N63 9.270 -1.176 -0.007 ETKDGv3 34
9C9 N71 8.418 -1.363 -1.098 ETKDGv3 35
9C9 C67 8.876 -1.457 -2.475 ETKDGv3 36
9C9 C61 7.102 -1.030 -0.686 ETKDGv3 37
9C9 H1 -7.164 3.311 1.212 ETKDGv3 38
9C9 H2 -8.717 1.704 2.124 ETKDGv3 39
9C9 H3 -7.868 -0.451 3.160 ETKDGv3 40
9C9 H4 -2.839 1.582 2.551 ETKDGv3 41
9C9 H5 -3.132 -0.106 2.975 ETKDGv3 42
9C9 H6 -3.156 0.978 0.085 ETKDGv3 43
9C9 H7 -4.457 -1.263 0.757 ETKDGv3 44
9C9 H8 -2.830 -1.982 0.858 ETKDGv3 45
9C9 H9 -4.339 -1.455 -1.516 ETKDGv3 46
9C9 H10 -5.409 0.108 -3.459 ETKDGv3 47
9C9 H11 -4.235 1.204 -4.297 ETKDGv3 48
9C9 H12 -4.058 0.875 -2.538 ETKDGv3 49
9C9 H13 -4.620 -1.077 -5.609 ETKDGv3 50
9C9 H14 -2.830 -1.271 -5.759 ETKDGv3 51
9C9 H15 -3.809 -2.519 -4.889 ETKDGv3 52
9C9 H16 -0.104 -1.390 -1.986 ETKDGv3 53
9C9 H17 -0.846 -2.140 -0.549 ETKDGv3 54
9C9 H18 0.666 0.866 -1.851 ETKDGv3 55
9C9 H19 0.384 1.837 -0.382 ETKDGv3 56
9C9 H20 1.806 1.528 1.549 ETKDGv3 57
9C9 H21 4.600 0.130 -0.245 ETKDGv3 58
9C9 H22 7.028 -0.529 3.282 ETKDGv3 59
9C9 H23 5.075 0.188 4.707 ETKDGv3 60
9C9 H24 2.964 0.779 3.694 ETKDGv3 61
9C9 H25 8.963 -0.594 1.976 ETKDGv3 62
9C9 H26 8.110 -1.968 -3.094 ETKDGv3 63
9C9 H27 9.820 -2.040 -2.517 ETKDGv3 64
9C9 H28 9.056 -0.438 -2.877 ETKDGv3 65
9C9 H29 6.234 -1.049 -1.331 ETKDGv3 66
#