data_9CA
#
_chem_comp.id 9CA
_chem_comp.name 9H-CARBAZOLE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H9 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-02-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 167.207
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9CA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2DE7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9CA C9A C9A C 0 1 Y N N N N N 0.663 23.176 47.793 1.135 -0.867 0.000 C9A 9CA 1
9CA C1 C1 C 0 1 Y N N N N N 0.369 23.120 46.434 2.492 -1.176 0.001 C1 9CA 2
9CA C2 C2 C 0 1 Y N N N N N 0.091 24.289 45.731 3.430 -0.165 0.001 C2 9CA 3
9CA C3 C3 C 0 1 Y N N N N N 0.105 25.517 46.387 3.034 1.163 0.000 C3 9CA 4
9CA C4 C4 C 0 1 Y N N N N N 0.397 25.576 47.747 1.695 1.489 0.000 C4 9CA 5
9CA C4A C4A C 0 1 Y N N N N N 0.676 24.405 48.447 0.737 0.478 -0.001 C4A 9CA 6
9CA C4B C4B C 0 1 Y N N N N N 1.009 24.147 49.770 -0.737 0.478 0.000 C4B 9CA 7
9CA C5 C5 C 0 1 Y N N N N N 1.194 24.965 50.881 -1.695 1.489 0.000 C5 9CA 8
9CA C6 C6 C 0 1 Y N N N N N 1.563 24.404 52.101 -3.034 1.163 0.001 C6 9CA 9
9CA C7 C7 C 0 1 Y N N N N N 1.744 23.028 52.206 -3.430 -0.165 0.001 C7 9CA 10
9CA C8 C8 C 0 1 Y N N N N N 1.557 22.212 51.093 -2.492 -1.176 0.001 C8 9CA 11
9CA C8A C8A C 0 1 Y N N N N N 1.188 22.771 49.873 -1.135 -0.867 -0.005 C8A 9CA 12
9CA N9 N9 N 0 1 Y N N N N N 0.971 22.229 48.676 0.000 -1.658 0.001 N9 9CA 13
9CA H1 H1 H 0 1 N N N N N N 0.356 22.168 45.924 2.811 -2.208 0.001 H1 9CA 14
9CA H2 H2 H 0 1 N N N N N N -0.136 24.243 44.676 4.481 -0.411 0.001 H2 9CA 15
9CA H3 H3 H 0 1 N N N N N N -0.111 26.424 45.841 3.779 1.946 0.000 H3 9CA 16
9CA H4 H4 H 0 1 N N N N N N 0.407 26.528 48.258 1.389 2.525 0.000 H4 9CA 17
9CA H5 H5 H 0 1 N N N N N N 1.052 26.032 50.797 -1.389 2.525 0.000 H5 9CA 18
9CA H6 H6 H 0 1 N N N N N N 1.709 25.036 52.965 -3.779 1.946 0.001 H6 9CA 19
9CA H7 H7 H 0 1 N N N N N N 2.030 22.592 53.152 -4.481 -0.411 0.003 H7 9CA 20
9CA H8 H8 H 0 1 N N N N N N 1.698 21.145 51.177 -2.811 -2.208 0.002 H8 9CA 21
9CA HN9 HN9 H 0 1 N N N N N N 1.031 21.252 48.470 0.000 -2.628 0.002 HN9 9CA 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9CA C9A C1 DOUB Y N 1
9CA C9A C4A SING Y N 2
9CA C9A N9 SING Y N 3
9CA C1 C2 SING Y N 4
9CA C1 H1 SING N N 5
9CA C2 C3 DOUB Y N 6
9CA C2 H2 SING N N 7
9CA C3 C4 SING Y N 8
9CA C3 H3 SING N N 9
9CA C4 C4A DOUB Y N 10
9CA C4 H4 SING N N 11
9CA C4A C4B SING Y N 12
9CA C4B C5 DOUB Y N 13
9CA C4B C8A SING Y N 14
9CA C5 C6 SING Y N 15
9CA C5 H5 SING N N 16
9CA C6 C7 DOUB Y N 17
9CA C6 H6 SING N N 18
9CA C7 C8 SING Y N 19
9CA C7 H7 SING N N 20
9CA C8 C8A DOUB Y N 21
9CA C8 H8 SING N N 22
9CA C8A N9 SING Y N 23
9CA N9 HN9 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9CA SMILES ACDLabs 10.04 c1cccc3c1c2c(cccc2)n3
9CA SMILES_CANONICAL CACTVS 3.341 "[nH]1c2ccccc2c3ccccc13"
9CA SMILES CACTVS 3.341 "[nH]1c2ccccc2c3ccccc13"
9CA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c3ccccc3[nH]2
9CA SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)c3ccccc3[nH]2
9CA InChI InChI 1.03 InChI=1S/C12H9N/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)13-11/h1-8,13H
9CA InChIKey InChI 1.03 UJOBWOGCFQCDNV-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9CA "SYSTEMATIC NAME" ACDLabs 10.04 9H-carbazole
9CA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 9H-carbazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9CA 'Create component' 2006-02-14 RCSB
9CA 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 9CA
_pdbe_chem_comp_drugbank_details.drugbank_id DB07301
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Carbazole
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 86-74-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
9CA 9-Azafluorene DrugBank ?
9CA 9H-Carbazole DrugBank ?
9CA Dibenzopyrrole DrugBank ?
9CA Diphenylenimide DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 9CA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB07301
_pdbe_chem_comp_drugbank_classification.parent Carbazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Indoles and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as carbazoles. These are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
9CA DB07301 'Ferredoxin CarAc' 'Pseudomonas resinovorans' Q8GI16 unknown 1
9CA DB07301 'Terminal oxygenase component of carbazole' 'Janthinobacterium sp. (strain J3)' Q84II6 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9CA C9A C 8.005 0.396 1
9CA C1 C 9.528 0.745 2
9CA C2 C 10.582 -0.409 3
9CA C3 C 10.099 -1.895 4
9CA C4 C 8.569 -2.208 5
9CA C4A C 7.541 -1.031 6
9CA C4B C 6.041 -1.031 7
9CA C5 C 5.014 -2.208 8
9CA C6 C 3.483 -1.895 9
9CA C7 C 3.000 -0.409 10
9CA C8 C 4.054 0.745 11
9CA C8A C 5.577 0.396 12
9CA N9 N 6.791 1.278 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9CA C9A C1 DOUBLE NONE 1
9CA C9A C4A SINGLE NONE 2
9CA C9A N9 SINGLE NONE 3
9CA C1 C2 SINGLE NONE 4
9CA C2 C3 DOUBLE NONE 5
9CA C3 C4 SINGLE NONE 6
9CA C4 C4A DOUBLE NONE 7
9CA C4A C4B SINGLE NONE 8
9CA C4B C5 DOUBLE NONE 9
9CA C4B C8A SINGLE NONE 10
9CA C5 C6 SINGLE NONE 11
9CA C6 C7 DOUBLE NONE 12
9CA C7 C8 SINGLE NONE 13
9CA C8 C8A DOUBLE NONE 14
9CA C8A N9 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9CA MurckoScaffold S1 scaffold 'c1ccc2c(c1)[nH]c1ccccc12' InChI=1S/C12H9N/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)13-11/h1-8,13H UJOBWOGCFQCDNV-UHFFFAOYSA-N
9CA carbazole F1 fragment 'c1ccc2c(c1)[nH]c1ccccc12' InChI=1S/C12H9N/c1-3-7-11-9(5-1)10-6-2-4-8-12(10)13-11/h1-8,13H UJOBWOGCFQCDNV-UHFFFAOYSA-N
9CA indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
9CA phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
9CA pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9CA C9A S1 1
9CA C1 S1 1
9CA C2 S1 1
9CA C3 S1 1
9CA C4 S1 1
9CA C4A S1 1
9CA C4B S1 1
9CA C5 S1 1
9CA C6 S1 1
9CA C7 S1 1
9CA C8 S1 1
9CA C8A S1 1
9CA N9 S1 1
9CA C9A F1 1
9CA C4A F1 1
9CA C4B F1 1
9CA C8A F1 1
9CA N9 F1 1
9CA C8 F1 1
9CA C7 F1 1
9CA C6 F1 1
9CA C5 F1 1
9CA C4 F1 1
9CA C3 F1 1
9CA C2 F1 1
9CA C1 F1 1
9CA C9A F2 1
9CA C4A F2 1
9CA C4B F2 1
9CA C8A F2 1
9CA N9 F2 1
9CA C4 F2 1
9CA C3 F2 1
9CA C2 F2 1
9CA C1 F2 1
9CA C8A F2 2
9CA C4B F2 2
9CA C4A F2 2
9CA C9A F2 2
9CA N9 F2 2
9CA C5 F2 2
9CA C6 F2 2
9CA C7 F2 2
9CA C8 F2 2
9CA C9A F3 1
9CA C1 F3 1
9CA C2 F3 1
9CA C3 F3 1
9CA C4 F3 1
9CA C4A F3 1
9CA C4B F3 2
9CA C5 F3 2
9CA C6 F3 2
9CA C7 F3 2
9CA C8 F3 2
9CA C8A F3 2
9CA C9A F4 1
9CA C4A F4 1
9CA C4B F4 1
9CA C8A F4 1
9CA N9 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9CA
_pdbe_chem_comp_rdkit_properties.exactmw 167.073
_pdbe_chem_comp_rdkit_properties.amw 167.211
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 88.707
_pdbe_chem_comp_rdkit_properties.tpsa 15.790
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.464
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.393
_pdbe_chem_comp_rdkit_properties.chi0v 6.447
_pdbe_chem_comp_rdkit_properties.chi1v 3.697
_pdbe_chem_comp_rdkit_properties.chi2v 1.809
_pdbe_chem_comp_rdkit_properties.chi3v 1.809
_pdbe_chem_comp_rdkit_properties.chi4v 1.253
_pdbe_chem_comp_rdkit_properties.chi0n 15.447
_pdbe_chem_comp_rdkit_properties.chi1n 8.144
_pdbe_chem_comp_rdkit_properties.chi2n 1.809
_pdbe_chem_comp_rdkit_properties.chi3n 1.809
_pdbe_chem_comp_rdkit_properties.chi4n 1.253
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.760
_pdbe_chem_comp_rdkit_properties.kappa1 2.383
_pdbe_chem_comp_rdkit_properties.kappa2 2.362
_pdbe_chem_comp_rdkit_properties.kappa3 0.872
_pdbe_chem_comp_rdkit_properties.Phi 0.433
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9CA UniChem ChEMBL CHEMBL243580
9CA UniChem DrugBank DB07301
9CA UniChem PDBe 9CA
9CA UniChem 'KEGG LIGAND' C08060
9CA UniChem ChEBI 27543
9CA UniChem ZINC ZINC000100009863
9CA UniChem eMolecules 489076
9CA UniChem fdasrs 0P2197HHHN
9CA UniChem HMDB HMDB0249614
9CA UniChem NMRShiftDB 10006006
9CA UniChem Nikkaji J3.896B
9CA UniChem 'EPA CompTox Dashboard' DTXSID4020248
9CA UniChem BRENDA 13154
9CA UniChem BRENDA 159045
9CA UniChem Rhea 27543
9CA UniChem ChemicalBook CB18768802
9CA UniChem ChemicalBook CB4854492
9CA UniChem 'Probes And Drugs' PD005368
9CA UniChem SureChEMBL SCHEMBL7650
9CA UniChem 'PubChem TPHARMA' 15265288
9CA UniChem PubChem 6854
9CA UniChem Mcule MCULE-7610805198
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9CA C9A 1.026 1.034 0.127 ETKDGv3 1
9CA C1 2.268 1.520 0.176 ETKDGv3 2
9CA C2 3.395 0.548 0.183 ETKDGv3 3
9CA C3 3.156 -0.782 0.141 ETKDGv3 4
9CA C4 1.762 -1.297 0.086 ETKDGv3 5
9CA C4A 0.773 -0.401 0.081 ETKDGv3 6
9CA C4B -0.672 -0.553 0.035 ETKDGv3 7
9CA C5 -1.451 -1.636 -0.016 ETKDGv3 8
9CA C6 -2.923 -1.422 -0.054 ETKDGv3 9
9CA C7 -3.435 -0.172 -0.035 ETKDGv3 10
9CA C8 -2.537 1.014 0.023 ETKDGv3 11
9CA C8A -1.220 0.798 0.055 ETKDGv3 12
9CA N9 -0.189 1.786 0.112 ETKDGv3 13
9CA H1 2.452 2.586 0.210 ETKDGv3 14
9CA H2 4.414 0.912 0.223 ETKDGv3 15
9CA H3 3.984 -1.479 0.146 ETKDGv3 16
9CA H4 1.561 -2.360 0.052 ETKDGv3 17
9CA H5 -1.031 -2.633 -0.031 ETKDGv3 18
9CA H6 -3.585 -2.277 -0.096 ETKDGv3 19
9CA H7 -4.507 -0.028 -0.063 ETKDGv3 20
9CA H8 -2.940 2.018 0.038 ETKDGv3 21
9CA HN9 -0.300 2.824 0.136 ETKDGv3 22
#