data_9CZ
#
_chem_comp.id 9CZ
_chem_comp.name
(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H44 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-09
_chem_comp.pdbx_modified_date 2017-05-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.647
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9CZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NMB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9CZ O3 O1 O 0 1 N N N N N N -33.318 23.621 -5.806 -5.174 2.402 -0.958 O3 9CZ 1
9CZ C25 C1 C 0 1 N N S N N N -33.876 22.393 -5.317 -5.884 2.041 0.229 C25 9CZ 2
9CZ C24 C2 C 0 1 N N N N N N -35.318 22.246 -5.775 -7.268 1.501 -0.142 C24 9CZ 3
9CZ C23 C3 C 0 1 N N R N N N -35.853 20.966 -5.163 -7.121 0.238 -0.992 C23 9CZ 4
9CZ O2 O2 O 0 1 N N N N N N -35.798 21.041 -3.733 -8.408 -0.175 -1.456 O2 9CZ 5
9CZ C22 C4 C 0 1 N N N N N N -35.069 19.764 -5.664 -6.498 -0.882 -0.153 C22 9CZ 6
9CZ C26 C5 C 0 1 N N N N N N -33.037 21.247 -5.826 -5.128 0.954 0.966 C26 9CZ 7
9CZ C27 C6 C 0 1 N N N N N N -31.940 21.480 -6.523 -4.466 1.205 2.096 C27 9CZ 8
9CZ C21 C7 C 0 1 N N N N N N -33.570 19.914 -5.547 -5.161 -0.399 0.371 C21 9CZ 9
9CZ C20 C8 C 0 1 N N N N N N -32.733 18.871 -5.283 -4.054 -1.167 0.300 C20 9CZ 10
9CZ C19 C9 C 0 1 N N N N N N -31.313 18.878 -5.184 -2.779 -0.664 0.818 C19 9CZ 11
9CZ C15 C10 C 0 1 N N N N N N -30.557 17.787 -4.986 -1.685 -1.423 0.748 C15 9CZ 12
9CZ C2 C11 C 0 1 N N S N N N -29.046 17.803 -4.937 -0.354 -0.962 1.261 C2 9CZ 13
9CZ C16 C12 C 0 1 N N N N N N -31.162 16.419 -4.835 -1.700 -2.821 0.146 C16 9CZ 14
9CZ C17 C13 C 0 1 N N N N N N -30.624 15.445 -5.882 -0.582 -2.979 -0.883 C17 9CZ 15
9CZ C18 C14 C 0 1 N N N N N N -29.104 15.514 -5.932 0.768 -2.486 -0.337 C18 9CZ 16
9CZ C1 C15 C 0 1 N N R N N N -28.593 16.939 -6.147 0.608 -1.028 0.041 C1 9CZ 17
9CZ C C16 C 0 1 N N N N N N -29.201 17.527 -7.431 -0.036 -0.272 -1.123 C 9CZ 18
9CZ C5 C17 C 0 1 N N R N N N -27.074 17.192 -6.030 1.836 -0.266 0.516 C5 9CZ 19
9CZ C4 C18 C 0 1 N N N N N N -26.978 18.722 -5.969 1.293 0.786 1.519 C4 9CZ 20
9CZ C3 C19 C 0 1 N N N N N N -28.208 19.099 -5.075 -0.245 0.510 1.664 C3 9CZ 21
9CZ C6 C20 C 0 1 N N S N N N -26.074 16.508 -6.983 2.520 0.428 -0.663 C6 9CZ 22
9CZ C14 C21 C 0 1 N N N N N N -24.648 16.539 -6.434 2.951 -0.620 -1.691 C14 9CZ 23
9CZ C7 C22 C 0 1 N N S N N N -26.133 17.098 -8.396 3.751 1.187 -0.163 C7 9CZ 24
9CZ C13 C23 C 0 1 N N N N N N -26.030 16.027 -9.479 4.410 1.967 -1.322 C13 9CZ 25
9CZ C12 C24 C 0 1 N N N N N N -24.944 16.538 -10.431 5.925 1.846 -1.043 C12 9CZ 26
9CZ C8 C25 C 0 1 N N R N N N -24.818 18.014 -10.084 6.002 1.009 0.253 C8 9CZ 27
9CZ O O3 O 0 1 N N N N N N -25.064 18.038 -8.671 4.765 0.262 0.286 O 9CZ 28
9CZ C9 C26 C 0 1 N N N N N N -23.466 18.655 -10.398 7.198 0.057 0.201 C9 9CZ 29
9CZ C11 C27 C 0 1 N N N N N N -23.139 18.483 -11.876 7.198 -0.831 1.447 C11 9CZ 30
9CZ O1 O4 O 0 1 N N N N N N -22.429 18.017 -9.625 7.106 -0.762 -0.967 O1 9CZ 31
9CZ C10 C28 C 0 1 N N N N N N -23.478 20.125 -10.021 8.494 0.868 0.153 C10 9CZ 32
9CZ H1 H1 H 0 1 N N N N N N -33.837 24.352 -5.493 -4.285 2.745 -0.795 H1 9CZ 33
9CZ H2 H2 H 0 1 N N N N N N -33.854 22.386 -4.217 -5.991 2.915 0.872 H2 9CZ 34
9CZ H3 H3 H 0 1 N N N N N N -35.912 23.105 -5.431 -7.820 1.263 0.767 H3 9CZ 35
9CZ H4 H4 H 0 1 N N N N N N -35.361 22.186 -6.873 -7.813 2.257 -0.708 H4 9CZ 36
9CZ H5 H5 H 0 1 N N N N N N -36.900 20.847 -5.479 -6.478 0.449 -1.847 H5 9CZ 37
9CZ H6 H6 H 0 1 N N N N N N -36.135 20.235 -3.360 -8.391 -0.973 -2.003 H6 9CZ 38
9CZ H7 H7 H 0 1 N N N N N N -35.319 19.606 -6.723 -7.155 -1.124 0.683 H7 9CZ 39
9CZ H8 H8 H 0 1 N N N N N N -35.375 18.884 -5.080 -6.351 -1.767 -0.773 H8 9CZ 40
9CZ H9 H9 H 0 1 N N N N N N -31.638 22.496 -6.732 -3.937 0.410 2.599 H9 9CZ 41
9CZ H10 H10 H 0 1 N N N N N N -31.344 20.655 -6.884 -4.459 2.204 2.507 H10 9CZ 42
9CZ H11 H11 H 0 1 N N N N N N -33.210 17.914 -5.129 -4.107 -2.152 -0.139 H11 9CZ 43
9CZ H12 H12 H 0 1 N N N N N N -30.808 19.829 -5.275 -2.726 0.321 1.257 H12 9CZ 44
9CZ H13 H13 H 0 1 N N N N N N -28.725 17.290 -4.019 -0.006 -1.610 2.066 H13 9CZ 45
9CZ H14 H14 H 0 1 N N N N N N -32.253 16.497 -4.948 -1.563 -3.555 0.940 H14 9CZ 46
9CZ H15 H15 H 0 1 N N N N N N -30.924 16.033 -3.833 -2.661 -2.993 -0.340 H15 9CZ 47
9CZ H16 H16 H 0 1 N N N N N N -31.032 15.710 -6.868 -0.494 -4.031 -1.153 H16 9CZ 48
9CZ H17 H17 H 0 1 N N N N N N -30.933 14.422 -5.620 -0.836 -2.404 -1.774 H17 9CZ 49
9CZ H18 H18 H 0 1 N N N N N N -28.749 14.882 -6.760 1.044 -3.063 0.545 H18 9CZ 50
9CZ H19 H19 H 0 1 N N N N N N -28.701 15.134 -4.982 1.537 -2.590 -1.103 H19 9CZ 51
9CZ H20 H20 H 0 1 N N N N N N -30.280 17.315 -7.457 0.624 -0.308 -1.990 H20 9CZ 52
9CZ H21 H21 H 0 1 N N N N N N -29.040 18.615 -7.448 -0.990 -0.735 -1.373 H21 9CZ 53
9CZ H22 H22 H 0 1 N N N N N N -28.717 17.072 -8.308 -0.200 0.767 -0.835 H22 9CZ 54
9CZ H23 H23 H 0 1 N N N N N N -26.800 16.843 -5.024 2.531 -0.941 1.015 H23 9CZ 55
9CZ H24 H24 H 0 1 N N N N N N -26.034 19.044 -5.504 1.782 0.668 2.486 H24 9CZ 56
9CZ H25 H25 H 0 1 N N N N N N -27.063 19.167 -6.972 1.461 1.791 1.134 H25 9CZ 57
9CZ H26 H26 H 0 1 N N N N N N -27.871 19.444 -4.086 -0.816 1.136 0.978 H26 9CZ 58
9CZ H27 H27 H 0 1 N N N N N N -28.803 19.890 -5.556 -0.570 0.667 2.693 H27 9CZ 59
9CZ H28 H28 H 0 1 N N N N N N -26.371 15.452 -7.059 1.825 1.128 -1.126 H28 9CZ 60
9CZ H29 H29 H 0 1 N N N N N N -24.635 16.111 -5.421 2.074 -1.161 -2.047 H29 9CZ 61
9CZ H30 H30 H 0 1 N N N N N N -23.990 15.950 -7.090 3.439 -0.126 -2.531 H30 9CZ 62
9CZ H31 H31 H 0 1 N N N N N N -24.292 17.579 -6.397 3.646 -1.320 -1.227 H31 9CZ 63
9CZ H32 H32 H 0 1 N N N N N N -27.100 17.609 -8.512 3.475 1.867 0.643 H32 9CZ 64
9CZ H33 H33 H 0 1 N N N N N N -26.988 15.917 -10.008 4.161 1.509 -2.280 H33 9CZ 65
9CZ H34 H34 H 0 1 N N N N N N -25.739 15.060 -9.042 4.098 3.011 -1.306 H34 9CZ 66
9CZ H35 H35 H 0 1 N N N N N N -25.250 16.407 -11.480 6.423 1.329 -1.862 H35 9CZ 67
9CZ H36 H36 H 0 1 N N N N N N -23.993 16.013 -10.258 6.365 2.831 -0.887 H36 9CZ 68
9CZ H37 H37 H 0 1 N N N N N N -25.605 18.572 -10.613 6.073 1.661 1.123 H37 9CZ 69
9CZ H38 H38 H 0 1 N N N N N N -22.165 18.947 -12.093 6.317 -1.472 1.436 H38 9CZ 70
9CZ H39 H39 H 0 1 N N N N N N -23.097 17.411 -12.120 8.097 -1.448 1.454 H39 9CZ 71
9CZ H40 H40 H 0 1 N N N N N N -23.919 18.967 -12.483 7.181 -0.205 2.339 H40 9CZ 72
9CZ H41 H41 H 0 1 N N N N N N -22.618 18.115 -8.699 6.307 -1.306 -1.003 H41 9CZ 73
9CZ H42 H42 H 0 1 N N N N N N -23.716 20.228 -8.952 8.565 1.493 1.044 H42 9CZ 74
9CZ H43 H43 H 0 1 N N N N N N -22.489 20.563 -10.220 9.347 0.190 0.116 H43 9CZ 75
9CZ H44 H44 H 0 1 N N N N N N -24.238 20.650 -10.618 8.494 1.501 -0.735 H44 9CZ 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9CZ C11 C9 SING N N 1
9CZ C12 C8 SING N N 2
9CZ C12 C13 SING N N 3
9CZ C9 C8 SING N N 4
9CZ C9 C10 SING N N 5
9CZ C9 O1 SING N N 6
9CZ C8 O SING N N 7
9CZ C13 C7 SING N N 8
9CZ O C7 SING N N 9
9CZ C7 C6 SING N N 10
9CZ C C1 SING N N 11
9CZ C6 C14 SING N N 12
9CZ C6 C5 SING N N 13
9CZ C27 C26 DOUB N N 14
9CZ C1 C5 SING N N 15
9CZ C1 C18 SING N N 16
9CZ C1 C2 SING N N 17
9CZ C5 C4 SING N N 18
9CZ C4 C3 SING N N 19
9CZ C18 C17 SING N N 20
9CZ C17 C16 SING N N 21
9CZ C26 C21 SING N N 22
9CZ C26 C25 SING N N 23
9CZ O3 C25 SING N N 24
9CZ C24 C25 SING N N 25
9CZ C24 C23 SING N N 26
9CZ C22 C21 SING N N 27
9CZ C22 C23 SING N N 28
9CZ C21 C20 DOUB N Z 29
9CZ C20 C19 SING N N 30
9CZ C19 C15 DOUB N E 31
9CZ C23 O2 SING N N 32
9CZ C3 C2 SING N N 33
9CZ C15 C2 SING N N 34
9CZ C15 C16 SING N N 35
9CZ O3 H1 SING N N 36
9CZ C25 H2 SING N N 37
9CZ C24 H3 SING N N 38
9CZ C24 H4 SING N N 39
9CZ C23 H5 SING N N 40
9CZ O2 H6 SING N N 41
9CZ C22 H7 SING N N 42
9CZ C22 H8 SING N N 43
9CZ C27 H9 SING N N 44
9CZ C27 H10 SING N N 45
9CZ C20 H11 SING N N 46
9CZ C19 H12 SING N N 47
9CZ C2 H13 SING N N 48
9CZ C16 H14 SING N N 49
9CZ C16 H15 SING N N 50
9CZ C17 H16 SING N N 51
9CZ C17 H17 SING N N 52
9CZ C18 H18 SING N N 53
9CZ C18 H19 SING N N 54
9CZ C H20 SING N N 55
9CZ C H21 SING N N 56
9CZ C H22 SING N N 57
9CZ C5 H23 SING N N 58
9CZ C4 H24 SING N N 59
9CZ C4 H25 SING N N 60
9CZ C3 H26 SING N N 61
9CZ C3 H27 SING N N 62
9CZ C6 H28 SING N N 63
9CZ C14 H29 SING N N 64
9CZ C14 H30 SING N N 65
9CZ C14 H31 SING N N 66
9CZ C7 H32 SING N N 67
9CZ C13 H33 SING N N 68
9CZ C13 H34 SING N N 69
9CZ C12 H35 SING N N 70
9CZ C12 H36 SING N N 71
9CZ C8 H37 SING N N 72
9CZ C11 H38 SING N N 73
9CZ C11 H39 SING N N 74
9CZ C11 H40 SING N N 75
9CZ O1 H41 SING N N 76
9CZ C10 H42 SING N N 77
9CZ C10 H43 SING N N 78
9CZ C10 H44 SING N N 79
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9CZ InChI InChI 1.03 InChI=1S/C28H44O4/c1-17-20(15-21(29)16-24(17)30)9-8-19-7-6-14-28(5)22(10-11-23(19)28)18(2)25-12-13-26(32-25)27(3,4)31/h8-9,18,21-26,29-31H,1,6-7,10-16H2,2-5H3/b19-8+,20-9-/t18-,21+,22+,23-,24-,25-,26+,28+/m0/s1
9CZ InChIKey InChI 1.03 DDIWZQGTNVZJGO-XOJGNBOJSA-N
9CZ SMILES_CANONICAL CACTVS 3.385 C[C@H]([C@@H]1CC[C@@H](O1)C(C)(C)O)[C@H]2CC[C@H]3/C(CCC[C@]23C)=C/C=C4/C[C@@H](O)C[C@H](O)C4=C
9CZ SMILES CACTVS 3.385 C[CH]([CH]1CC[CH](O1)C(C)(C)O)[CH]2CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C[CH](O)C4=C
9CZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H]([C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C)[C@@H]4CC[C@@H](O4)C(C)(C)O
9CZ SMILES "OpenEye OEToolkits" 2.0.6 CC(C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C)C4CCC(O4)C(C)(C)O
#
_pdbx_chem_comp_identifier.comp_id 9CZ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{S},5~{R})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9CZ 'Create component' 2017-05-09 EBI
9CZ 'Initial release' 2017-05-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9CZ O3 O 8.196 -6.849 1
9CZ C25 C 6.897 -6.099 2
9CZ C24 C 5.598 -6.849 3
9CZ C23 C 4.299 -6.099 4
9CZ O2 O 3.000 -6.849 5
9CZ C22 C 4.299 -4.599 6
9CZ C26 C 6.897 -4.599 7
9CZ C27 C 8.196 -3.849 8
9CZ C21 C 5.598 -3.849 9
9CZ C20 C 5.598 -2.349 10
9CZ C19 C 6.897 -1.599 11
9CZ C15 C 6.897 -0.099 12
9CZ C2 C 8.196 0.651 13
9CZ C16 C 5.598 0.651 14
9CZ C17 C 5.598 2.151 15
9CZ C18 C 6.897 2.901 16
9CZ C1 C 8.196 2.151 17
9CZ C C 8.196 3.651 18
9CZ C5 C 9.616 2.608 19
9CZ C4 C 10.491 1.401 20
9CZ C3 C 9.616 0.194 21
9CZ C6 C 10.082 4.034 22
9CZ C14 C 9.080 5.150 23
9CZ C7 C 11.549 4.343 24
9CZ C13 C 12.662 3.337 25
9CZ C12 C 13.963 4.085 26
9CZ C8 C 13.653 5.553 27
9CZ O O 12.162 5.713 28
9CZ C9 C 14.659 6.666 29
9CZ C11 C 15.665 7.779 30
9CZ O1 O 13.546 7.672 31
9CZ C10 C 15.772 5.660 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9CZ C11 C9 SINGLE NONE 1
9CZ C12 C8 SINGLE NONE 2
9CZ C12 C13 SINGLE NONE 3
9CZ C8 C9 SINGLE BEGINWEDGE 4
9CZ C9 C10 SINGLE NONE 5
9CZ C9 O1 SINGLE NONE 6
9CZ C8 O SINGLE NONE 7
9CZ C7 C13 SINGLE BEGINWEDGE 8
9CZ O C7 SINGLE NONE 9
9CZ C7 C6 SINGLE NONE 10
9CZ C1 C SINGLE BEGINWEDGE 11
9CZ C6 C14 SINGLE BEGINDASH 12
9CZ C6 C5 SINGLE NONE 13
9CZ C27 C26 DOUBLE NONE 14
9CZ C1 C5 SINGLE NONE 15
9CZ C1 C18 SINGLE NONE 16
9CZ C1 C2 SINGLE NONE 17
9CZ C5 C4 SINGLE BEGINWEDGE 18
9CZ C4 C3 SINGLE NONE 19
9CZ C18 C17 SINGLE NONE 20
9CZ C17 C16 SINGLE NONE 21
9CZ C26 C21 SINGLE ENDDOWNRIGHT 22
9CZ C26 C25 SINGLE NONE 23
9CZ C25 O3 SINGLE BEGINWEDGE 24
9CZ C24 C25 SINGLE NONE 25
9CZ C24 C23 SINGLE NONE 26
9CZ C22 C21 SINGLE ENDUPRIGHT 27
9CZ C22 C23 SINGLE NONE 28
9CZ C21 C20 DOUBLE NONE 29
9CZ C20 C19 SINGLE ENDUPRIGHT 30
9CZ C19 C15 DOUBLE NONE 31
9CZ C23 O2 SINGLE BEGINDASH 32
9CZ C3 C2 SINGLE NONE 33
9CZ C15 C2 SINGLE ENDUPRIGHT 34
9CZ C15 C16 SINGLE ENDDOWNRIGHT 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
9CZ MurckoScaffold S1 scaffold 'C=C1CCCC/C1=C/C=C1\CCCC2[C@@H](C[C@@H]3CCCO3)CC[C@@H]12' InChI=1S/C23H34O/c1-17-6-2-3-7-18(17)11-12-19-8-4-10-22-20(13-14-23(19)22)16-21-9-5-15-24-21/h11-12,20-23H,1-10,13-16H2/b18-11-,19-12+/t20-,21+,22-,23+/m1/s1 HWDWPTITVJIJCD-XWHGKJSESA-N
9CZ cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
9CZ cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9CZ C25 S1 1
9CZ C24 S1 1
9CZ C23 S1 1
9CZ C22 S1 1
9CZ C26 S1 1
9CZ C27 S1 1
9CZ C21 S1 1
9CZ C20 S1 1
9CZ C19 S1 1
9CZ C15 S1 1
9CZ C2 S1 1
9CZ C16 S1 1
9CZ C17 S1 1
9CZ C18 S1 1
9CZ C1 S1 1
9CZ C5 S1 1
9CZ C4 S1 1
9CZ C3 S1 1
9CZ C6 S1 1
9CZ C7 S1 1
9CZ C13 S1 1
9CZ C12 S1 1
9CZ C8 S1 1
9CZ O S1 1
9CZ C25 F1 1
9CZ C26 F1 1
9CZ C21 F1 1
9CZ C22 F1 1
9CZ C23 F1 1
9CZ C24 F1 1
9CZ C15 F1 2
9CZ C2 F1 2
9CZ C1 F1 2
9CZ C18 F1 2
9CZ C17 F1 2
9CZ C16 F1 2
9CZ C2 F2 1
9CZ C1 F2 1
9CZ C5 F2 1
9CZ C4 F2 1
9CZ C3 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9CZ
_pdbe_chem_comp_rdkit_properties.exactmw 444.324
_pdbe_chem_comp_rdkit_properties.amw 444.656
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.786
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 256.076
_pdbe_chem_comp_rdkit_properties.tpsa 69.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.082
_pdbe_chem_comp_rdkit_properties.CrippenMR 128.082
_pdbe_chem_comp_rdkit_properties.chi0v 15.633
_pdbe_chem_comp_rdkit_properties.chi1v 8.521
_pdbe_chem_comp_rdkit_properties.chi2v 4.296
_pdbe_chem_comp_rdkit_properties.chi3v 4.296
_pdbe_chem_comp_rdkit_properties.chi4v 2.765
_pdbe_chem_comp_rdkit_properties.chi0n 59.633
_pdbe_chem_comp_rdkit_properties.chi1n 30.245
_pdbe_chem_comp_rdkit_properties.chi2n 4.296
_pdbe_chem_comp_rdkit_properties.chi3n 4.296
_pdbe_chem_comp_rdkit_properties.chi4n 2.765
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.940
_pdbe_chem_comp_rdkit_properties.kappa1 4.606
_pdbe_chem_comp_rdkit_properties.kappa2 9.017
_pdbe_chem_comp_rdkit_properties.kappa3 4.531
_pdbe_chem_comp_rdkit_properties.Phi 1.298
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9CZ UniChem PubChem 102429027
9CZ UniChem Nikkaji J3.200.765A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9CZ O3 -5.149 -5.140 -1.328 ETKDGv3 1
9CZ C25 -5.328 -3.937 -2.037 ETKDGv3 2
9CZ C24 -6.819 -3.743 -2.390 ETKDGv3 3
9CZ C23 -7.078 -2.398 -3.097 ETKDGv3 4
9CZ O2 -6.408 -2.352 -4.331 ETKDGv3 5
9CZ C22 -6.618 -1.224 -2.218 ETKDGv3 6
9CZ C26 -4.784 -2.728 -1.292 ETKDGv3 7
9CZ C27 -4.032 -2.850 -0.187 ETKDGv3 8
9CZ C21 -5.173 -1.389 -1.811 ETKDGv3 9
9CZ C20 -4.319 -0.352 -1.943 ETKDGv3 10
9CZ C19 -2.851 -0.469 -1.774 ETKDGv3 11
9CZ C15 -2.029 0.589 -1.622 ETKDGv3 12
9CZ C2 -0.540 0.426 -1.385 ETKDGv3 13
9CZ C16 -2.530 2.023 -1.685 ETKDGv3 14
9CZ C17 -1.374 3.046 -1.735 ETKDGv3 15
9CZ C18 -0.283 2.833 -0.653 ETKDGv3 16
9CZ C1 -0.065 1.339 -0.236 ETKDGv3 17
9CZ C -0.847 1.046 1.085 ETKDGv3 18
9CZ C5 1.425 0.887 -0.110 ETKDGv3 19
9CZ C4 1.364 -0.643 -0.355 ETKDGv3 20
9CZ C3 0.040 -0.945 -1.067 ETKDGv3 21
9CZ C6 2.221 1.273 1.193 ETKDGv3 22
9CZ C14 2.225 2.803 1.398 ETKDGv3 23
9CZ C7 3.699 0.742 1.140 ETKDGv3 24
9CZ C13 3.848 -0.716 1.583 ETKDGv3 25
9CZ C12 5.154 -0.751 2.334 ETKDGv3 26
9CZ C8 5.653 0.691 2.276 ETKDGv3 27
9CZ O 4.550 1.507 1.964 ETKDGv3 28
9CZ C9 6.334 1.172 3.593 ETKDGv3 29
9CZ C11 6.754 2.652 3.463 ETKDGv3 30
9CZ O1 5.459 1.029 4.688 ETKDGv3 31
9CZ C10 7.594 0.334 3.875 ETKDGv3 32
9CZ H1 -5.709 -5.093 -0.509 ETKDGv3 33
9CZ H2 -4.756 -4.023 -2.986 ETKDGv3 34
9CZ H3 -7.432 -3.783 -1.463 ETKDGv3 35
9CZ H4 -7.152 -4.576 -3.047 ETKDGv3 36
9CZ H5 -8.175 -2.288 -3.266 ETKDGv3 37
9CZ H6 -6.908 -2.947 -4.950 ETKDGv3 38
9CZ H7 -6.785 -0.275 -2.776 ETKDGv3 39
9CZ H8 -7.243 -1.182 -1.299 ETKDGv3 40
9CZ H9 -3.736 -3.816 0.198 ETKDGv3 41
9CZ H10 -3.706 -1.978 0.365 ETKDGv3 42
9CZ H11 -4.725 0.602 -2.251 ETKDGv3 43
9CZ H12 -2.428 -1.462 -1.787 ETKDGv3 44
9CZ H13 -0.042 0.750 -2.330 ETKDGv3 45
9CZ H14 -3.133 2.168 -2.606 ETKDGv3 46
9CZ H15 -3.177 2.231 -0.806 ETKDGv3 47
9CZ H16 -1.791 4.073 -1.642 ETKDGv3 48
9CZ H17 -0.897 2.985 -2.738 ETKDGv3 49
9CZ H18 -0.570 3.445 0.228 ETKDGv3 50
9CZ H19 0.664 3.267 -1.041 ETKDGv3 51
9CZ H20 -0.708 -0.000 1.427 ETKDGv3 52
9CZ H21 -0.511 1.710 1.906 ETKDGv3 53
9CZ H22 -1.935 1.219 0.964 ETKDGv3 54
9CZ H23 1.979 1.326 -0.972 ETKDGv3 55
9CZ H24 1.374 -1.205 0.602 ETKDGv3 56
9CZ H25 2.221 -0.970 -0.983 ETKDGv3 57
9CZ H26 -0.627 -1.517 -0.384 ETKDGv3 58
9CZ H27 0.205 -1.535 -1.995 ETKDGv3 59
9CZ H28 1.716 0.833 2.079 ETKDGv3 60
9CZ H29 2.686 3.315 0.526 ETKDGv3 61
9CZ H30 2.783 3.082 2.316 ETKDGv3 62
9CZ H31 1.207 3.194 1.562 ETKDGv3 63
9CZ H32 4.075 0.839 0.095 ETKDGv3 64
9CZ H33 3.027 -1.030 2.265 ETKDGv3 65
9CZ H34 3.887 -1.399 0.708 ETKDGv3 66
9CZ H35 4.977 -1.093 3.377 ETKDGv3 67
9CZ H36 5.880 -1.438 1.846 ETKDGv3 68
9CZ H37 6.390 0.778 1.443 ETKDGv3 69
9CZ H38 7.245 2.998 4.398 ETKDGv3 70
9CZ H39 7.464 2.786 2.619 ETKDGv3 71
9CZ H40 5.870 3.300 3.284 ETKDGv3 72
9CZ H41 4.655 1.586 4.516 ETKDGv3 73
9CZ H42 8.104 0.699 4.793 ETKDGv3 74
9CZ H43 8.308 0.397 3.026 ETKDGv3 75
9CZ H44 7.332 -0.733 4.038 ETKDGv3 76
#